Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3618
Gene name
Locationscaffold_286:6529..7748
Strand-
Gene length (bp)1219
Transcript length (bp)1023
Coding sequence length (bp)1020
Protein length (aa) 340

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09362 DUF1996 Domain of unknown function (DUF1996) 3.7E-68 37 268

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.0 0.0 0.0
CcL In ants, during behavior modification 0.0 0.0 0.0
CcD In ants, recently dead 0.0 0.0 0.0

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3618
MKLDKCAALAHVLLHTPAVLGHIFTVNCKQLTIQRGDPILFPGVVSPHVHTVVGGTAFALTETNEDAKAANATTC
DKLLDNSNYWQPQLYHERSDGKFELVEMQGIAAYYIDRACDYAPGRQNCDNVPHGKAPPAGLRMVVGNPYLRTYD
ASNPEQRAVSHICLGRGTSEDTPHLPSKQCERLRAETYFPSCWDGRNLDSSNHKSHMAFPVIGDYNTGVCPPSHP
TAILSVFLEFFYDTAAIKNFNRWVWAMGDPTGYGLHGDFINGWTDQGALERAMDTCTGSMGVNDPRCSLNVGSSG
PGQPSPQSPQIQPPDEEVGLRGPLDKLPGNNPVTGRTIRS
Coding >Ophio5|3618
ATGAAGCTCGACAAGTGTGCCGCCCTGGCTCATGTCCTACTTCATACGCCCGCCGTGCTCGGGCACATCTTCACC
GTCAACTGCAAGCAACTGACGATACAGCGGGGAGACCCAATTCTGTTTCCTGGCGTCGTCTCTCCGCACGTTCAT
ACTGTTGTTGGAGGCACCGCCTTTGCCCTGACTGAAACGAACGAAGATGCCAAGGCCGCCAACGCCACAACCTGT
GACAAGCTCCTGGACAATAGTAATTATTGGCAGCCTCAGCTCTACCATGAGCGGTCCGACGGAAAATTTGAGCTG
GTAGAGATGCAGGGAATCGCAGCCTACTACATCGATCGAGCTTGCGACTATGCTCCAGGTCGTCAGAACTGTGAT
AATGTACCGCATGGCAAAGCACCTCCTGCAGGACTGCGTATGGTCGTGGGAAACCCGTATCTTCGAACATACGAC
GCATCTAACCCTGAACAACGAGCCGTCTCTCATATCTGCTTAGGCAGGGGTACATCCGAAGACACTCCTCATCTG
CCGTCAAAACAATGCGAGCGTCTCCGTGCCGAGACATATTTTCCATCCTGTTGGGATGGAAGAAACCTGGACAGC
TCGAACCATAAGAGCCACATGGCGTTTCCTGTTATCGGTGATTACAACACTGGCGTCTGCCCCCCTTCGCACCCT
ACAGCCATCTTGTCCGTCTTTCTCGAGTTCTTCTACGACACAGCGGCTATTAAAAACTTTAACCGCTGGGTATGG
GCCATGGGCGACCCGACCGGCTACGGTCTCCATGGAGATTTCATCAACGGATGGACAGATCAGGGGGCTTTGGAG
CGGGCCATGGACACATGTACTGGATCGATGGGCGTCAATGACCCGCGTTGCAGTTTGAACGTTGGATCAAGCGGA
CCGGGTCAGCCGAGCCCGCAATCACCGCAGATTCAGCCTCCTGACGAGGAGGTAGGCCTTCGCGGCCCTCTCGAT
AAGTTGCCAGGGAACAACCCGGTTACTGGTCGAACAATTCGAAGT
Transcript >Ophio5|3618
ATGAAGCTCGACAAGTGTGCCGCCCTGGCTCATGTCCTACTTCATACGCCCGCCGTGCTCGGGCACATCTTCACC
GTCAACTGCAAGCAACTGACGATACAGCGGGGAGACCCAATTCTGTTTCCTGGCGTCGTCTCTCCGCACGTTCAT
ACTGTTGTTGGAGGCACCGCCTTTGCCCTGACTGAAACGAACGAAGATGCCAAGGCCGCCAACGCCACAACCTGT
GACAAGCTCCTGGACAATAGTAATTATTGGCAGCCTCAGCTCTACCATGAGCGGTCCGACGGAAAATTTGAGCTG
GTAGAGATGCAGGGAATCGCAGCCTACTACATCGATCGAGCTTGCGACTATGCTCCAGGTCGTCAGAACTGTGAT
AATGTACCGCATGGCAAAGCACCTCCTGCAGGACTGCGTATGGTCGTGGGAAACCCGTATCTTCGAACATACGAC
GCATCTAACCCTGAACAACGAGCCGTCTCTCATATCTGCTTAGGCAGGGGTACATCCGAAGACACTCCTCATCTG
CCGTCAAAACAATGCGAGCGTCTCCGTGCCGAGACATATTTTCCATCCTGTTGGGATGGAAGAAACCTGGACAGC
TCGAACCATAAGAGCCACATGGCGTTTCCTGTTATCGGTGATTACAACACTGGCGTCTGCCCCCCTTCGCACCCT
ACAGCCATCTTGTCCGTCTTTCTCGAGTTCTTCTACGACACAGCGGCTATTAAAAACTTTAACCGCTGGGTATGG
GCCATGGGCGACCCGACCGGCTACGGTCTCCATGGAGATTTCATCAACGGATGGACAGATCAGGGGGCTTTGGAG
CGGGCCATGGACACATGTACTGGATCGATGGGCGTCAATGACCCGCGTTGCAGTTTGAACGTTGGATCAAGCGGA
CCGGGTCAGCCGAGCCCGCAATCACCGCAGATTCAGCCTCCTGACGAGGAGGTAGGCCTTCGCGGCCCTCTCGAT
AAGTTGCCAGGGAACAACCCGGTTACTGGTCGAACAATTCGAAGTTAG
Gene >Ophio5|3618
ATGAAGCTCGACAAGTGTGCCGCCCTGGCTCATGTCCTACTTCATACGCCCGCCGTGCTCGGGCACATCTTCACC
GTCAACTGCAAGCAACTGACGATACAGCGGGGAGACCCAATTCTGTTTCCTGGCGTCGTCTCTCCGCACGTTCAT
ACTGTTGTTGGAGGCACCGCCTTTGCCCTGACTGAAACGAACGAAGATGCCAAGGCCGCCAACGCCACAACCTGT
GACAAGCTCCTGGACAATAGTAATTATTGGCAGCCTCAGCTCTACCATGAGCGGTCCGACGGAAAATTTGAGCTG
GTAGAGATGCAGGGAATCGTGAGTCTTCACCCCCGTCTGTTGAGGCTGGGACTGATAACTCTACGCACATAGGCA
GCCTACTACATCGATCGAGCTTGCGACTATGCTCCAGGTCGTCAGAACTGTGATAATGTACCGCATGGCAAAGCA
CCTCCTGCAGGACTGCGTATGGTCGTGGGAAACCCGTATCTTCGGTCAGCTCTTGGAACCTCATCGACTCGCAAG
GAGAAAGACGAGACTATCTATACTGACGACAGCATAGAACATACGACGCATCTAACCCTGAACAACGAGCCGTCT
CTCATATCTGCTTAGGCAGGGGTACATCCGAAGACACTCCTCATCTGCCGTCAAAACAATGCGAGCGTCTCCGTG
CCGAGACATATTTTCCATCCTGTTGGGATGGAAGAAACCTGGACAGCTCGAACCATAAGAGCCACGTAAACGAGC
CTCAACCTCACATGATACATGCCAATACCACGTAGGCTGGCTGAGCTGACTTCTCTCTTCTTAGATGGCGTTTCC
TGTTATCGGTGATTACAACACTGGCGTCTGCCCCCCTTCGCACCCTACAGCCATCTTGTCCGTCTTTCTCGAGTT
CTTCTACGACACAGCGGCTATTAAAAACTTTAACCGCTGGGTATGGGCCATGGGCGACCCGACCGGCTACGGTCT
CCATGGAGATTTCATCAACGGATGGACAGATCAGGGGGCTTTGGAGCGGGCCATGGACACATGTACTGGATCGAT
GGGCGTCAATGACCCGCGTTGCAGTTTGAACGTTGGATCAAGCGGACCGGGTCAGCCGAGCCCGCAATCACCGCA
GATTCAGCCTCCTGACGAGGAGGTAGGCCTTCGCGGCCCTCTCGATAAGTTGCCAGGGAACAACCCGGTTACTGG
TCGAACAATTCGAAGTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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