Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3608
Gene name
Locationscaffold_285:6713..7642
Strand-
Gene length (bp)929
Transcript length (bp)822
Coding sequence length (bp)819
Protein length (aa) 273

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02630 SCO1-SenC SCO1/SenC 1.6E-47 111 247

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P23833|SCO1_YEAST Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1 15 271 1.0E-80
sp|O42899|SCO1_SCHPO Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sco1 PE=3 SV=1 15 264 2.0E-70
sp|P38072|SCO2_YEAST Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1 69 271 3.0E-69
sp|Q8VYP0|SCO11_ARATH Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1 52 272 2.0E-48
sp|Q92H76|SCO22_RICCN SCO2-like protein RC0895 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0895 PE=3 SV=1 109 259 8.0E-45
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P23833|SCO1_YEAST Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1 15 271 1.0E-80
sp|O42899|SCO1_SCHPO Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sco1 PE=3 SV=1 15 264 2.0E-70
sp|P38072|SCO2_YEAST Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1 69 271 3.0E-69
sp|Q8VYP0|SCO11_ARATH Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1 52 272 2.0E-48
sp|Q92H76|SCO22_RICCN SCO2-like protein RC0895 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0895 PE=3 SV=1 109 259 8.0E-45
sp|Q1RIN4|SCO22_RICBR SCO2-like protein RBE_0699 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0699 PE=3 SV=1 109 259 7.0E-44
sp|Q5SUC9|SCO1_MOUSE Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=1 SV=1 65 269 2.0E-43
sp|Q8VCL2|SCO2_MOUSE Protein SCO2 homolog, mitochondrial OS=Mus musculus GN=Sco2 PE=1 SV=1 33 268 3.0E-43
sp|Q4UKW2|SCO22_RICFE SCO2-like protein RF_0960 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0960 PE=3 SV=1 109 259 4.0E-43
sp|A1A4J8|SCO1_BOVIN Protein SCO1 homolog, mitochondrial OS=Bos taurus GN=SCO1 PE=2 SV=1 65 269 5.0E-43
sp|Q9ZCW7|SCO22_RICPR SCO2-like protein RP587 OS=Rickettsia prowazekii (strain Madrid E) GN=RP587 PE=3 SV=1 107 263 8.0E-42
sp|O75880|SCO1_HUMAN Protein SCO1 homolog, mitochondrial OS=Homo sapiens GN=SCO1 PE=1 SV=1 65 272 1.0E-41
sp|O43819|SCO2_HUMAN Protein SCO2 homolog, mitochondrial OS=Homo sapiens GN=SCO2 PE=1 SV=3 86 272 5.0E-40
sp|Q5RH02|SCO2_DANRE Protein SCO2 homolog, mitochondrial OS=Danio rerio GN=sco2 PE=3 SV=1 84 269 1.0E-39
sp|A6H784|SCO2_BOVIN Protein SCO2 homolog, mitochondrial OS=Bos taurus GN=SCO2 PE=2 SV=1 87 272 6.0E-38
sp|Q8LAL0|SCO12_ARATH Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=HCC2 PE=2 SV=1 101 268 1.0E-33
sp|Q68WF1|SCO22_RICTY SCO2-like protein RT0576 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=RT0576 PE=3 SV=2 109 249 1.0E-31
sp|P47206|SCOP_PSEST Putative copper-binding protein OS=Pseudomonas stutzeri GN=scoP PE=3 SV=2 93 247 1.0E-27
sp|Q52720|SENC_RHOCB Protein SenC OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=senC PE=3 SV=2 94 257 2.0E-27
sp|Q92JM5|SCO21_RICCN SCO2-like protein RC0042 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0042 PE=3 SV=1 108 249 7.0E-18
sp|Q4UNH4|SCO21_RICFE SCO2-like protein RF_0043 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0043 PE=3 SV=1 108 249 3.0E-17
sp|Q9ZEB4|SCO21_RICPR SCO2-like protein RP031 OS=Rickettsia prowazekii (strain Madrid E) GN=RP031 PE=3 SV=1 114 248 3.0E-16
sp|Q1RKK4|SCO21_RICBR SCO2-like protein RBE_0029 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0029 PE=3 SV=1 114 249 6.0E-16
[Show less]

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Mitochondrion Mitochondrial transit peptide 0.1219 0.1269 0.027 0.1037 0.9073 0.0353 0.1689 0.0808 0.181 0.0272

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 67 86 19

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 189.00 102.34 275.67
CcL In ants, during behavior modification 114.19 60.90 167.48
CcD In ants, recently dead 147.59 80.17 215.02

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.024067 yes
SC16a CcD 0.305875 no
CcL CcD 0.298145 no

Orthologs

Orthofinder run ID4
Orthogroup2905
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6470
Ophiocordyceps australis map64 (Brazil) OphauB2|850
Ophiocordyceps camponoti-floridani Ophcf2|03815
Ophiocordyceps camponoti-rufipedis Ophun1|1163
Ophiocordyceps kimflemingae Ophio5|3608 (this protein)
Ophiocordyceps subramaniannii Hirsu2|4846

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3608
MKAAMSYPVTAKAIGQLLCRRCFSSSFPRPLRPRLTPLRAPVRTTAPRRTKHKTVEQARSRYSTGPFSWKAGVIF
VATCSLLVWYFESEKSRMQRQRIADSTKGVGKPKVGGNFDLIDQDGNPFTSAMVKGKHSLVYFGFTRCPDICPEE
LDKMARILDIVEAKAPGSLLPIFITCDPARDDPKALKSYLAEFHPSFIGLTGTYEQIKDMCKKYRVYFSTPQEVK
PGQDYLVDHSIYFYLMDPEGDFLEALGRQHSPSEGAKLILDHIKDWKG
Coding >Ophio5|3608
ATGAAGGCGGCCATGTCGTATCCAGTCACAGCCAAAGCCATCGGCCAGCTTCTTTGTCGGCGATGCTTCTCATCG
AGCTTCCCACGGCCCTTGCGGCCGAGACTGACGCCGCTCCGGGCCCCGGTCCGGACGACGGCGCCGAGACGCACC
AAGCATAAGACGGTTGAACAGGCCCGGAGCCGATACAGCACGGGGCCTTTCTCGTGGAAAGCGGGTGTCATCTTC
GTCGCCACCTGCTCATTGCTGGTGTGGTATTTCGAGTCTGAAAAGTCGCGGATGCAGAGGCAGCGTATCGCAGAT
TCGACCAAGGGGGTTGGCAAGCCCAAAGTCGGTGGCAACTTTGACCTCATCGATCAGGACGGGAACCCCTTTACC
AGCGCCATGGTAAAGGGCAAACACTCCTTGGTCTACTTTGGCTTCACGCGCTGTCCCGACATCTGCCCGGAGGAG
CTCGACAAGATGGCACGCATACTTGATATCGTCGAAGCCAAGGCTCCCGGCTCTCTGCTACCGATATTCATCACC
TGCGACCCTGCGCGCGACGACCCCAAGGCCCTCAAGAGCTACCTCGCCGAGTTCCACCCATCCTTCATCGGGCTC
ACAGGGACGTACGAACAGATCAAGGACATGTGCAAAAAGTATCGTGTATACTTTAGCACGCCGCAGGAGGTGAAG
CCCGGACAGGACTACCTGGTCGACCACAGCATTTACTTTTACCTTATGGATCCCGAGGGCGACTTTTTGGAGGCG
CTGGGGCGGCAGCACTCGCCAAGCGAGGGCGCGAAGCTGATTCTAGATCACATCAAGGATTGGAAGGGA
Transcript >Ophio5|3608
ATGAAGGCGGCCATGTCGTATCCAGTCACAGCCAAAGCCATCGGCCAGCTTCTTTGTCGGCGATGCTTCTCATCG
AGCTTCCCACGGCCCTTGCGGCCGAGACTGACGCCGCTCCGGGCCCCGGTCCGGACGACGGCGCCGAGACGCACC
AAGCATAAGACGGTTGAACAGGCCCGGAGCCGATACAGCACGGGGCCTTTCTCGTGGAAAGCGGGTGTCATCTTC
GTCGCCACCTGCTCATTGCTGGTGTGGTATTTCGAGTCTGAAAAGTCGCGGATGCAGAGGCAGCGTATCGCAGAT
TCGACCAAGGGGGTTGGCAAGCCCAAAGTCGGTGGCAACTTTGACCTCATCGATCAGGACGGGAACCCCTTTACC
AGCGCCATGGTAAAGGGCAAACACTCCTTGGTCTACTTTGGCTTCACGCGCTGTCCCGACATCTGCCCGGAGGAG
CTCGACAAGATGGCACGCATACTTGATATCGTCGAAGCCAAGGCTCCCGGCTCTCTGCTACCGATATTCATCACC
TGCGACCCTGCGCGCGACGACCCCAAGGCCCTCAAGAGCTACCTCGCCGAGTTCCACCCATCCTTCATCGGGCTC
ACAGGGACGTACGAACAGATCAAGGACATGTGCAAAAAGTATCGTGTATACTTTAGCACGCCGCAGGAGGTGAAG
CCCGGACAGGACTACCTGGTCGACCACAGCATTTACTTTTACCTTATGGATCCCGAGGGCGACTTTTTGGAGGCG
CTGGGGCGGCAGCACTCGCCAAGCGAGGGCGCGAAGCTGATTCTAGATCACATCAAGGATTGGAAGGGATGA
Gene >Ophio5|3608
ATGAAGGCGGCCATGTCGTATCCAGTCACAGCCAAAGCCATCGGCCAGCTTCTTTGTCGGCGATGCTTCTCATCG
AGCTTCCCACGGCCCTTGCGGCCGAGACTGACGCCGCTCCGGGCCCCGGTCCGGACGACGGCGCCGAGACGCACC
AAGCATAAGACGGTTGAACAGGCCCGGAGCCGATACAGCACGGGGGTGCGACCAATGGCGTATTGTGCGTGGCGC
GCGAGACTGACAGCCCATTCTTGCAGCCTTTCTCGTGGAAAGCGGGTGTCATCTTCGTCGCCACCTGCTCATTGC
TGGTGTGGTATTTCGAGTCTGAAAAGTCGCGGATGCAGAGGCAGCGTATCGCAGATTCGACCAAGGGGGTTGGCA
AGCCCAAAGTCGGTGGCAACTTTGACCTCATCGATCAGGACGGGAACCCCTTTACCAGCGCCATGGTAAAGGGCA
AACACTCCTTGGTGCGTCTTCCCTCTCCTCCTTCGCTTCTCTGGCTTCTGACGTCGGCTTAGGTCTACTTTGGCT
TCACGCGCTGTCCCGACATCTGCCCGGAGGAGCTCGACAAGATGGCACGCATACTTGATATCGTCGAAGCCAAGG
CTCCCGGCTCTCTGCTACCGATATTCATCACCTGCGACCCTGCGCGCGACGACCCCAAGGCCCTCAAGAGCTACC
TCGCCGAGTTCCACCCATCCTTCATCGGGCTCACAGGGACGTACGAACAGATCAAGGACATGTGCAAAAAGTATC
GTGTATACTTTAGCACGCCGCAGGAGGTGAAGCCCGGACAGGACTACCTGGTCGACCACAGCATTTACTTTTACC
TTATGGATCCCGAGGGCGACTTTTTGGAGGCGCTGGGGCGGCAGCACTCGCCAAGCGAGGGCGCGAAGCTGATTC
TAGATCACATCAAGGATTGGAAGGGATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail