© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3608 |
| Gene name | |
| Location | scaffold_285:6713..7642 |
| Strand | - |
| Gene length (bp) | 929 |
| Transcript length (bp) | 822 |
| Coding sequence length (bp) | 819 |
| Protein length (aa) | 273 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02630 | SCO1-SenC | SCO1/SenC | 1.6E-47 | 111 | 247 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P23833|SCO1_YEAST | Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1 | 15 | 271 | 1.0E-80 |
| sp|O42899|SCO1_SCHPO | Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sco1 PE=3 SV=1 | 15 | 264 | 2.0E-70 |
| sp|P38072|SCO2_YEAST | Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1 | 69 | 271 | 3.0E-69 |
| sp|Q8VYP0|SCO11_ARATH | Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1 | 52 | 272 | 2.0E-48 |
| sp|Q92H76|SCO22_RICCN | SCO2-like protein RC0895 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0895 PE=3 SV=1 | 109 | 259 | 8.0E-45 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P23833|SCO1_YEAST | Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1 | 15 | 271 | 1.0E-80 |
| sp|O42899|SCO1_SCHPO | Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sco1 PE=3 SV=1 | 15 | 264 | 2.0E-70 |
| sp|P38072|SCO2_YEAST | Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1 | 69 | 271 | 3.0E-69 |
| sp|Q8VYP0|SCO11_ARATH | Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1 | 52 | 272 | 2.0E-48 |
| sp|Q92H76|SCO22_RICCN | SCO2-like protein RC0895 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0895 PE=3 SV=1 | 109 | 259 | 8.0E-45 |
| sp|Q1RIN4|SCO22_RICBR | SCO2-like protein RBE_0699 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0699 PE=3 SV=1 | 109 | 259 | 7.0E-44 |
| sp|Q5SUC9|SCO1_MOUSE | Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=1 SV=1 | 65 | 269 | 2.0E-43 |
| sp|Q8VCL2|SCO2_MOUSE | Protein SCO2 homolog, mitochondrial OS=Mus musculus GN=Sco2 PE=1 SV=1 | 33 | 268 | 3.0E-43 |
| sp|Q4UKW2|SCO22_RICFE | SCO2-like protein RF_0960 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0960 PE=3 SV=1 | 109 | 259 | 4.0E-43 |
| sp|A1A4J8|SCO1_BOVIN | Protein SCO1 homolog, mitochondrial OS=Bos taurus GN=SCO1 PE=2 SV=1 | 65 | 269 | 5.0E-43 |
| sp|Q9ZCW7|SCO22_RICPR | SCO2-like protein RP587 OS=Rickettsia prowazekii (strain Madrid E) GN=RP587 PE=3 SV=1 | 107 | 263 | 8.0E-42 |
| sp|O75880|SCO1_HUMAN | Protein SCO1 homolog, mitochondrial OS=Homo sapiens GN=SCO1 PE=1 SV=1 | 65 | 272 | 1.0E-41 |
| sp|O43819|SCO2_HUMAN | Protein SCO2 homolog, mitochondrial OS=Homo sapiens GN=SCO2 PE=1 SV=3 | 86 | 272 | 5.0E-40 |
| sp|Q5RH02|SCO2_DANRE | Protein SCO2 homolog, mitochondrial OS=Danio rerio GN=sco2 PE=3 SV=1 | 84 | 269 | 1.0E-39 |
| sp|A6H784|SCO2_BOVIN | Protein SCO2 homolog, mitochondrial OS=Bos taurus GN=SCO2 PE=2 SV=1 | 87 | 272 | 6.0E-38 |
| sp|Q8LAL0|SCO12_ARATH | Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=HCC2 PE=2 SV=1 | 101 | 268 | 1.0E-33 |
| sp|Q68WF1|SCO22_RICTY | SCO2-like protein RT0576 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=RT0576 PE=3 SV=2 | 109 | 249 | 1.0E-31 |
| sp|P47206|SCOP_PSEST | Putative copper-binding protein OS=Pseudomonas stutzeri GN=scoP PE=3 SV=2 | 93 | 247 | 1.0E-27 |
| sp|Q52720|SENC_RHOCB | Protein SenC OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=senC PE=3 SV=2 | 94 | 257 | 2.0E-27 |
| sp|Q92JM5|SCO21_RICCN | SCO2-like protein RC0042 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0042 PE=3 SV=1 | 108 | 249 | 7.0E-18 |
| sp|Q4UNH4|SCO21_RICFE | SCO2-like protein RF_0043 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0043 PE=3 SV=1 | 108 | 249 | 3.0E-17 |
| sp|Q9ZEB4|SCO21_RICPR | SCO2-like protein RP031 OS=Rickettsia prowazekii (strain Madrid E) GN=RP031 PE=3 SV=1 | 114 | 248 | 3.0E-16 |
| sp|Q1RKK4|SCO21_RICBR | SCO2-like protein RBE_0029 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0029 PE=3 SV=1 | 114 | 249 | 6.0E-16 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 67 | 86 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 189.00 | 102.34 | 275.67 |
| CcL | In ants, during behavior modification | 114.19 | 60.90 | 167.48 |
| CcD | In ants, recently dead | 147.59 | 80.17 | 215.02 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.024067 | yes |
| SC16a | CcD | 0.305875 | no |
| CcL | CcD | 0.298145 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3608 MKAAMSYPVTAKAIGQLLCRRCFSSSFPRPLRPRLTPLRAPVRTTAPRRTKHKTVEQARSRYSTGPFSWKAGVIF VATCSLLVWYFESEKSRMQRQRIADSTKGVGKPKVGGNFDLIDQDGNPFTSAMVKGKHSLVYFGFTRCPDICPEE LDKMARILDIVEAKAPGSLLPIFITCDPARDDPKALKSYLAEFHPSFIGLTGTYEQIKDMCKKYRVYFSTPQEVK PGQDYLVDHSIYFYLMDPEGDFLEALGRQHSPSEGAKLILDHIKDWKG |
| Coding | >Ophio5|3608 ATGAAGGCGGCCATGTCGTATCCAGTCACAGCCAAAGCCATCGGCCAGCTTCTTTGTCGGCGATGCTTCTCATCG AGCTTCCCACGGCCCTTGCGGCCGAGACTGACGCCGCTCCGGGCCCCGGTCCGGACGACGGCGCCGAGACGCACC AAGCATAAGACGGTTGAACAGGCCCGGAGCCGATACAGCACGGGGCCTTTCTCGTGGAAAGCGGGTGTCATCTTC GTCGCCACCTGCTCATTGCTGGTGTGGTATTTCGAGTCTGAAAAGTCGCGGATGCAGAGGCAGCGTATCGCAGAT TCGACCAAGGGGGTTGGCAAGCCCAAAGTCGGTGGCAACTTTGACCTCATCGATCAGGACGGGAACCCCTTTACC AGCGCCATGGTAAAGGGCAAACACTCCTTGGTCTACTTTGGCTTCACGCGCTGTCCCGACATCTGCCCGGAGGAG CTCGACAAGATGGCACGCATACTTGATATCGTCGAAGCCAAGGCTCCCGGCTCTCTGCTACCGATATTCATCACC TGCGACCCTGCGCGCGACGACCCCAAGGCCCTCAAGAGCTACCTCGCCGAGTTCCACCCATCCTTCATCGGGCTC ACAGGGACGTACGAACAGATCAAGGACATGTGCAAAAAGTATCGTGTATACTTTAGCACGCCGCAGGAGGTGAAG CCCGGACAGGACTACCTGGTCGACCACAGCATTTACTTTTACCTTATGGATCCCGAGGGCGACTTTTTGGAGGCG CTGGGGCGGCAGCACTCGCCAAGCGAGGGCGCGAAGCTGATTCTAGATCACATCAAGGATTGGAAGGGA |
| Transcript | >Ophio5|3608 ATGAAGGCGGCCATGTCGTATCCAGTCACAGCCAAAGCCATCGGCCAGCTTCTTTGTCGGCGATGCTTCTCATCG AGCTTCCCACGGCCCTTGCGGCCGAGACTGACGCCGCTCCGGGCCCCGGTCCGGACGACGGCGCCGAGACGCACC AAGCATAAGACGGTTGAACAGGCCCGGAGCCGATACAGCACGGGGCCTTTCTCGTGGAAAGCGGGTGTCATCTTC GTCGCCACCTGCTCATTGCTGGTGTGGTATTTCGAGTCTGAAAAGTCGCGGATGCAGAGGCAGCGTATCGCAGAT TCGACCAAGGGGGTTGGCAAGCCCAAAGTCGGTGGCAACTTTGACCTCATCGATCAGGACGGGAACCCCTTTACC AGCGCCATGGTAAAGGGCAAACACTCCTTGGTCTACTTTGGCTTCACGCGCTGTCCCGACATCTGCCCGGAGGAG CTCGACAAGATGGCACGCATACTTGATATCGTCGAAGCCAAGGCTCCCGGCTCTCTGCTACCGATATTCATCACC TGCGACCCTGCGCGCGACGACCCCAAGGCCCTCAAGAGCTACCTCGCCGAGTTCCACCCATCCTTCATCGGGCTC ACAGGGACGTACGAACAGATCAAGGACATGTGCAAAAAGTATCGTGTATACTTTAGCACGCCGCAGGAGGTGAAG CCCGGACAGGACTACCTGGTCGACCACAGCATTTACTTTTACCTTATGGATCCCGAGGGCGACTTTTTGGAGGCG CTGGGGCGGCAGCACTCGCCAAGCGAGGGCGCGAAGCTGATTCTAGATCACATCAAGGATTGGAAGGGATGA |
| Gene | >Ophio5|3608 ATGAAGGCGGCCATGTCGTATCCAGTCACAGCCAAAGCCATCGGCCAGCTTCTTTGTCGGCGATGCTTCTCATCG AGCTTCCCACGGCCCTTGCGGCCGAGACTGACGCCGCTCCGGGCCCCGGTCCGGACGACGGCGCCGAGACGCACC AAGCATAAGACGGTTGAACAGGCCCGGAGCCGATACAGCACGGGGGTGCGACCAATGGCGTATTGTGCGTGGCGC GCGAGACTGACAGCCCATTCTTGCAGCCTTTCTCGTGGAAAGCGGGTGTCATCTTCGTCGCCACCTGCTCATTGC TGGTGTGGTATTTCGAGTCTGAAAAGTCGCGGATGCAGAGGCAGCGTATCGCAGATTCGACCAAGGGGGTTGGCA AGCCCAAAGTCGGTGGCAACTTTGACCTCATCGATCAGGACGGGAACCCCTTTACCAGCGCCATGGTAAAGGGCA AACACTCCTTGGTGCGTCTTCCCTCTCCTCCTTCGCTTCTCTGGCTTCTGACGTCGGCTTAGGTCTACTTTGGCT TCACGCGCTGTCCCGACATCTGCCCGGAGGAGCTCGACAAGATGGCACGCATACTTGATATCGTCGAAGCCAAGG CTCCCGGCTCTCTGCTACCGATATTCATCACCTGCGACCCTGCGCGCGACGACCCCAAGGCCCTCAAGAGCTACC TCGCCGAGTTCCACCCATCCTTCATCGGGCTCACAGGGACGTACGAACAGATCAAGGACATGTGCAAAAAGTATC GTGTATACTTTAGCACGCCGCAGGAGGTGAAGCCCGGACAGGACTACCTGGTCGACCACAGCATTTACTTTTACC TTATGGATCCCGAGGGCGACTTTTTGGAGGCGCTGGGGCGGCAGCACTCGCCAAGCGAGGGCGCGAAGCTGATTC TAGATCACATCAAGGATTGGAAGGGATGA |