Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|3571
Gene name
Location	scaffold_281:20758..21832
Strand	+
Gene length (bp)	1074
Transcript length (bp)	1074
Coding sequence length (bp)	1071
Protein length (aa)	357

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00787	PX	PX domain	8.7E-11	36	113

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O74509\|VAM7_SCHPO	Vacuolar morphogenesis protein 7 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC594.06c PE=3 SV=1	6	339	1.0E-29
sp\|P32912\|VAM7_YEAST	Vacuolar morphogenesis protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAM7 PE=1 SV=1	39	353	3.0E-11
sp\|Q54IX6\|STX8B_DICDI	Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1	182	357	4.0E-09

GO

GO Term	Description	Terminal node
GO:0035091	phosphatidylinositol binding	Yes
GO:0005488	binding	No
GO:0005543	phospholipid binding	No
GO:0003674	molecular_function	No
GO:0008289	lipid binding	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|3571 MAPPPEIAIPSTSISDEGSSKPFTLYNITLRLPLRSYVVQKRYSEFLQLHGTLVEQVGVPPPVPLPAKHWLKSTV RSADLARERQRGLERYLRTIAESPDRRWRDTSAWRAFLNLPSSSTSNSAASAAGRVASAAAGAADPGTWLDVHKE LKQSLLEARQCLSRRDGCPDGGDGTAAVEAGAAAKRALVRAGALVAHLSDGLRKMHESNRLGEGELRRRRDLVST ARMERDALEKLSNSIPSAAAGAGGGGPASAAEKSNLLRGGRPAGRVLGAPLPETDKTRELDNQGVLTLQKKEMQA QDEQVDQLATIIRRQRDMGLRIHDEVEAQSEMLDRMDQDTSRVMGKVQVANNRIKKM
Coding	>Ophio5\|3571 ATGGCGCCGCCTCCGGAGATTGCTATACCCTCGACGAGTATCTCAGACGAGGGCTCATCCAAACCTTTTACTCTC TACAATATCACATTGCGACTACCGCTACGGTCCTACGTTGTGCAGAAGCGCTACTCCGAGTTCCTTCAGCTGCAC GGCACGCTGGTCGAGCAGGTCGGCGTCCCTCCACCAGTGCCGTTACCGGCCAAGCATTGGCTCAAGTCGACGGTC AGGTCGGCCGACCTGGCGAGGGAGCGTCAGCGTGGGCTGGAGAGGTATCTGCGAACCATTGCCGAGTCGCCCGAC CGTCGATGGCGCGATACATCGGCTTGGAGGGCTTTTTTGAATCTGCCCAGCTCCAGTACCAGCAATTCGGCCGCC TCGGCTGCCGGCAGGGTCGCCAGCGCGGCTGCCGGCGCCGCCGACCCGGGCACCTGGCTTGACGTCCATAAGGAG CTGAAGCAGAGCCTGCTCGAAGCGCGGCAGTGTCTGTCGAGGCGCGACGGTTGTCCTGACGGCGGCGACGGCACA GCAGCGGTCGAGGCCGGCGCGGCGGCCAAGCGAGCCCTCGTCCGAGCCGGAGCCCTCGTCGCTCATCTGTCCGAC GGCCTTCGAAAGATGCACGAATCGAATCGGCTGGGCGAGGGCGAACTGCGGCGGAGGCGCGACCTTGTCTCGACG GCCCGCATGGAGCGCGACGCCCTGGAGAAGCTATCCAATAGCATCCCCAGCGCCGCCGCCGGCGCGGGCGGGGGC GGACCAGCGTCGGCGGCAGAAAAATCGAACCTGCTACGCGGCGGCAGACCGGCCGGACGGGTGCTGGGAGCGCCG CTGCCGGAGACGGACAAGACGAGGGAGCTCGACAACCAAGGGGTGCTGACGCTGCAGAAAAAAGAGATGCAGGCA CAGGACGAGCAGGTGGACCAGCTGGCGACCATCATCCGGCGCCAGAGGGACATGGGGCTTCGGATTCACGATGAG GTGGAGGCCCAGAGCGAGATGCTGGACCGGATGGACCAGGACACGTCGCGGGTCATGGGCAAGGTCCAGGTAGCC AACAACCGCATCAAGAAGATG
Transcript	>Ophio5\|3571 ATGGCGCCGCCTCCGGAGATTGCTATACCCTCGACGAGTATCTCAGACGAGGGCTCATCCAAACCTTTTACTCTC TACAATATCACATTGCGACTACCGCTACGGTCCTACGTTGTGCAGAAGCGCTACTCCGAGTTCCTTCAGCTGCAC GGCACGCTGGTCGAGCAGGTCGGCGTCCCTCCACCAGTGCCGTTACCGGCCAAGCATTGGCTCAAGTCGACGGTC AGGTCGGCCGACCTGGCGAGGGAGCGTCAGCGTGGGCTGGAGAGGTATCTGCGAACCATTGCCGAGTCGCCCGAC CGTCGATGGCGCGATACATCGGCTTGGAGGGCTTTTTTGAATCTGCCCAGCTCCAGTACCAGCAATTCGGCCGCC TCGGCTGCCGGCAGGGTCGCCAGCGCGGCTGCCGGCGCCGCCGACCCGGGCACCTGGCTTGACGTCCATAAGGAG CTGAAGCAGAGCCTGCTCGAAGCGCGGCAGTGTCTGTCGAGGCGCGACGGTTGTCCTGACGGCGGCGACGGCACA GCAGCGGTCGAGGCCGGCGCGGCGGCCAAGCGAGCCCTCGTCCGAGCCGGAGCCCTCGTCGCTCATCTGTCCGAC GGCCTTCGAAAGATGCACGAATCGAATCGGCTGGGCGAGGGCGAACTGCGGCGGAGGCGCGACCTTGTCTCGACG GCCCGCATGGAGCGCGACGCCCTGGAGAAGCTATCCAATAGCATCCCCAGCGCCGCCGCCGGCGCGGGCGGGGGC GGACCAGCGTCGGCGGCAGAAAAATCGAACCTGCTACGCGGCGGCAGACCGGCCGGACGGGTGCTGGGAGCGCCG CTGCCGGAGACGGACAAGACGAGGGAGCTCGACAACCAAGGGGTGCTGACGCTGCAGAAAAAAGAGATGCAGGCA CAGGACGAGCAGGTGGACCAGCTGGCGACCATCATCCGGCGCCAGAGGGACATGGGGCTTCGGATTCACGATGAG GTGGAGGCCCAGAGCGAGATGCTGGACCGGATGGACCAGGACACGTCGCGGGTCATGGGCAAGGTCCAGGTAGCC AACAACCGCATCAAGAAGATGTGA
Gene	>Ophio5\|3571 ATGGCGCCGCCTCCGGAGATTGCTATACCCTCGACGAGTATCTCAGACGAGGGCTCATCCAAACCTTTTACTCTC TACAATATCACATTGCGACTACCGCTACGGTCCTACGTTGTGCAGAAGCGCTACTCCGAGTTCCTTCAGCTGCAC GGCACGCTGGTCGAGCAGGTCGGCGTCCCTCCACCAGTGCCGTTACCGGCCAAGCATTGGCTCAAGTCGACGGTC AGGTCGGCCGACCTGGCGAGGGAGCGTCAGCGTGGGCTGGAGAGGTATCTGCGAACCATTGCCGAGTCGCCCGAC CGTCGATGGCGCGATACATCGGCTTGGAGGGCTTTTTTGAATCTGCCCAGCTCCAGTACCAGCAATTCGGCCGCC TCGGCTGCCGGCAGGGTCGCCAGCGCGGCTGCCGGCGCCGCCGACCCGGGCACCTGGCTTGACGTCCATAAGGAG CTGAAGCAGAGCCTGCTCGAAGCGCGGCAGTGTCTGTCGAGGCGCGACGGTTGTCCTGACGGCGGCGACGGCACA GCAGCGGTCGAGGCCGGCGCGGCGGCCAAGCGAGCCCTCGTCCGAGCCGGAGCCCTCGTCGCTCATCTGTCCGAC GGCCTTCGAAAGATGCACGAATCGAATCGGCTGGGCGAGGGCGAACTGCGGCGGAGGCGCGACCTTGTCTCGACG GCCCGCATGGAGCGCGACGCCCTGGAGAAGCTATCCAATAGCATCCCCAGCGCCGCCGCCGGCGCGGGCGGGGGC GGACCAGCGTCGGCGGCAGAAAAATCGAACCTGCTACGCGGCGGCAGACCGGCCGGACGGGTGCTGGGAGCGCCG CTGCCGGAGACGGACAAGACGAGGGAGCTCGACAACCAAGGGGTGCTGACGCTGCAGAAAAAAGAGATGCAGGCA CAGGACGAGCAGGTGGACCAGCTGGCGACCATCATCCGGCGCCAGAGGGACATGGGGCTTCGGATTCACGATGAG GTGGAGGCCCAGAGCGAGATGCTGGACCGGATGGACCAGGACACGTCGCGGGTCATGGGCAAGGTCCAGGTAGCC AACAACCGCATCAAGAAGATGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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