© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3566 |
| Gene name | |
| Location | scaffold_281:12982..13907 |
| Strand | + |
| Gene length (bp) | 925 |
| Transcript length (bp) | 861 |
| Coding sequence length (bp) | 858 |
| Protein length (aa) | 286 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 2.9E-31 | 68 | 270 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|C8ZI10|RSB1_YEAS8 | Sphingoid long-chain base transporter RSB1 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=RSB1 PE=3 SV=1 | 9 | 267 | 2.0E-08 |
| sp|P40113|RTM1_YEASX | Protein RTM1 OS=Saccharomyces cerevisiae GN=RTM1 PE=3 SV=1 | 69 | 263 | 4.0E-08 |
| sp|O13780|YEO2_SCHPO | Uncharacterized protein C17G6.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G6.02c PE=4 SV=1 | 44 | 252 | 6.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 34 | 56 | 22 |
| 2 | 63 | 85 | 22 |
| 3 | 95 | 117 | 22 |
| 4 | 138 | 160 | 22 |
| 5 | 170 | 192 | 22 |
| 6 | 213 | 232 | 19 |
| 7 | 247 | 269 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3566 MPSTKVSTMASAPSPSLPGICPPAHLRQALPSSAFSASVTLFALFAVLTILHLLLSRRGAVRFVVCVCLGCVCEI VGYAGGIVRWRHVKSCAGFAVEVVCLSIAPVLFTAAIHAAIVDALAEDSSSESRRLGPRLVDGLFLSLDFVCFTL VVVGSALIVASTSRRVATVLLLTGLALQMTTLTAAIAVLVDYWVVRRRTADPPRFTLRRRFSLLALAMAALLLVI RCAYRVGDLCAGWMPSVEEETFLVIFDGVFTLLAALALCLVHAARIPLVSFSDDGCDVTHK |
| Coding | >Ophio5|3566 ATGCCCTCAACCAAAGTCTCCACTATGGCCTCGGCTCCGTCGCCCTCCCTCCCTGGGATTTGTCCGCCAGCACAC CTCCGCCAAGCGCTTCCTTCATCCGCATTCAGCGCCAGCGTGACTCTCTTCGCGCTCTTCGCCGTCTTGACCATC CTCCACCTCCTTCTAAGCCGTCGCGGCGCCGTTCGTTTCGTCGTCTGCGTCTGTCTCGGCTGTGTCTGCGAGATA GTGGGCTACGCCGGTGGCATCGTGCGATGGCGTCATGTCAAGTCGTGCGCTGGCTTTGCCGTGGAAGTTGTGTGT CTCTCTATCGCTCCTGTTTTATTCACCGCTGCTATACACGCCGCTATCGTCGACGCCTTGGCAGAAGACTCGTCG TCAGAATCGCGCCGCCTTGGGCCGCGCCTCGTCGACGGCCTGTTCCTCAGCCTCGACTTTGTGTGCTTCACTCTC GTTGTCGTCGGAAGCGCTTTGATCGTCGCTTCGACTTCTCGACGAGTTGCAACAGTCTTGCTCTTGACCGGTCTT GCGCTGCAGATGACGACGCTGACAGCCGCCATCGCTGTACTGGTTGACTACTGGGTGGTCCGCCGTCGCACTGCC GATCCGCCTCGGTTCACCCTCCGTCGCAGGTTCTCGCTGCTCGCTCTGGCCATGGCAGCTCTGCTCCTGGTCATC CGCTGCGCCTACCGCGTCGGCGACTTATGCGCCGGCTGGATGCCATCGGTGGAGGAGGAGACGTTTCTGGTCATT TTCGACGGCGTCTTTACCCTCCTTGCCGCCTTGGCTCTTTGTCTCGTTCATGCCGCCCGAATCCCTCTGGTGTCC TTCTCAGACGACGGTTGCGACGTGACGCACAAG |
| Transcript | >Ophio5|3566 ATGCCCTCAACCAAAGTCTCCACTATGGCCTCGGCTCCGTCGCCCTCCCTCCCTGGGATTTGTCCGCCAGCACAC CTCCGCCAAGCGCTTCCTTCATCCGCATTCAGCGCCAGCGTGACTCTCTTCGCGCTCTTCGCCGTCTTGACCATC CTCCACCTCCTTCTAAGCCGTCGCGGCGCCGTTCGTTTCGTCGTCTGCGTCTGTCTCGGCTGTGTCTGCGAGATA GTGGGCTACGCCGGTGGCATCGTGCGATGGCGTCATGTCAAGTCGTGCGCTGGCTTTGCCGTGGAAGTTGTGTGT CTCTCTATCGCTCCTGTTTTATTCACCGCTGCTATACACGCCGCTATCGTCGACGCCTTGGCAGAAGACTCGTCG TCAGAATCGCGCCGCCTTGGGCCGCGCCTCGTCGACGGCCTGTTCCTCAGCCTCGACTTTGTGTGCTTCACTCTC GTTGTCGTCGGAAGCGCTTTGATCGTCGCTTCGACTTCTCGACGAGTTGCAACAGTCTTGCTCTTGACCGGTCTT GCGCTGCAGATGACGACGCTGACAGCCGCCATCGCTGTACTGGTTGACTACTGGGTGGTCCGCCGTCGCACTGCC GATCCGCCTCGGTTCACCCTCCGTCGCAGGTTCTCGCTGCTCGCTCTGGCCATGGCAGCTCTGCTCCTGGTCATC CGCTGCGCCTACCGCGTCGGCGACTTATGCGCCGGCTGGATGCCATCGGTGGAGGAGGAGACGTTTCTGGTCATT TTCGACGGCGTCTTTACCCTCCTTGCCGCCTTGGCTCTTTGTCTCGTTCATGCCGCCCGAATCCCTCTGGTGTCC TTCTCAGACGACGGTTGCGACGTGACGCACAAGTAG |
| Gene | >Ophio5|3566 ATGCCCTCAACCAAAGTCTCCACTATGGCCTCGGCTCCGTCGCCCTCCCTCCCTGGGATTTGTCCGCCAGCACAC CTCCGCCAAGCGCTTCCTTCATCCGCATTCAGCGCCAGCGTGACTCTCTTCGCGCTCTTCGCCGTCTTGACCATC CTCCACCTCCTTCTAAGCCGTCGCGGCGCCGTTCGTTTCGTCGTCTGCGTCTGTCTCGGCTGTGTCTGCGAGATA GTGGGCTACGCCGGTGGCATCGTGCGATGGCGTCATGTCAAGTCGTGCGCTGGCTTTGCCGTGGAAGTTGGTACG CGACCTTGTTCGAGTCCTCCCTCTTTGATGGAGCGTCGTGTCGAGGAAACTTGTTGCAGTGTGTCTCTCTATCGC TCCTGTTTTATTCACCGCTGCTATACACGCCGCTATCGTCGACGCCTTGGCAGAAGACTCGTCGTCAGAATCGCG CCGCCTTGGGCCGCGCCTCGTCGACGGCCTGTTCCTCAGCCTCGACTTTGTGTGCTTCACTCTCGTTGTCGTCGG AAGCGCTTTGATCGTCGCTTCGACTTCTCGACGAGTTGCAACAGTCTTGCTCTTGACCGGTCTTGCGCTGCAGAT GACGACGCTGACAGCCGCCATCGCTGTACTGGTTGACTACTGGGTGGTCCGCCGTCGCACTGCCGATCCGCCTCG GTTCACCCTCCGTCGCAGGTTCTCGCTGCTCGCTCTGGCCATGGCAGCTCTGCTCCTGGTCATCCGCTGCGCCTA CCGCGTCGGCGACTTATGCGCCGGCTGGATGCCATCGGTGGAGGAGGAGACGTTTCTGGTCATTTTCGACGGCGT CTTTACCCTCCTTGCCGCCTTGGCTCTTTGTCTCGTTCATGCCGCCCGAATCCCTCTGGTGTCCTTCTCAGACGA CGGTTGCGACGTGACGCACAAGTAG |