Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3550
Gene name
Locationscaffold_280:645..1194
Strand+
Gene length (bp)549
Transcript length (bp)549
Coding sequence length (bp)546
Protein length (aa) 182

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 27 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.15 0.0 0.73
CcL In ants, during behavior modification 0.24 0.0 0.81
CcD In ants, recently dead 0.23 0.0 0.89

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3550
MQTTQFRQLRLLLLLQLLVFTLSVSAIQTRAHPPPLVYILASTEQTSTTAVSEALQTLGFTYLDTSGNSSGSVRD
SGDSVYTFISHADDDTSYKRLAASRPQARFILPTDSSSVVVEGAARPTHTHHLVRHFFARGRQAQLLELDVGRRL
SVEQAENWVMLCRFLGLGYSMVERMKLWYFPR
Coding >Ophio5|3550
ATGCAGACGACACAGTTCCGTCAGCTGCGGCTGCTGCTGCTGCTGCAACTACTTGTCTTCACCCTCTCCGTCTCA
GCCATCCAAACTAGGGCTCACCCGCCTCCTCTGGTGTACATCCTCGCATCGACGGAGCAGACGTCGACGACAGCC
GTGAGCGAGGCGCTCCAGACTCTCGGATTCACATACTTGGATACGAGCGGGAATTCTTCCGGTTCGGTCCGAGAC
AGCGGCGATAGCGTATACACTTTCATCTCTCACGCCGACGACGACACCTCGTACAAACGTCTGGCTGCTTCCAGG
CCTCAGGCTAGATTCATCCTCCCGACGGATTCGTCCTCGGTCGTCGTCGAGGGCGCCGCTCGGCCGACACATACA
CATCATCTTGTTCGCCACTTCTTCGCGAGAGGGCGGCAAGCTCAGCTTCTGGAGCTTGATGTCGGCAGGAGGCTG
TCGGTTGAGCAGGCGGAGAACTGGGTCATGCTCTGCCGCTTCCTTGGACTGGGCTATAGCATGGTGGAGAGGATG
AAGCTCTGGTATTTTCCACGC
Transcript >Ophio5|3550
ATGCAGACGACACAGTTCCGTCAGCTGCGGCTGCTGCTGCTGCTGCAACTACTTGTCTTCACCCTCTCCGTCTCA
GCCATCCAAACTAGGGCTCACCCGCCTCCTCTGGTGTACATCCTCGCATCGACGGAGCAGACGTCGACGACAGCC
GTGAGCGAGGCGCTCCAGACTCTCGGATTCACATACTTGGATACGAGCGGGAATTCTTCCGGTTCGGTCCGAGAC
AGCGGCGATAGCGTATACACTTTCATCTCTCACGCCGACGACGACACCTCGTACAAACGTCTGGCTGCTTCCAGG
CCTCAGGCTAGATTCATCCTCCCGACGGATTCGTCCTCGGTCGTCGTCGAGGGCGCCGCTCGGCCGACACATACA
CATCATCTTGTTCGCCACTTCTTCGCGAGAGGGCGGCAAGCTCAGCTTCTGGAGCTTGATGTCGGCAGGAGGCTG
TCGGTTGAGCAGGCGGAGAACTGGGTCATGCTCTGCCGCTTCCTTGGACTGGGCTATAGCATGGTGGAGAGGATG
AAGCTCTGGTATTTTCCACGCTGA
Gene >Ophio5|3550
ATGCAGACGACACAGTTCCGTCAGCTGCGGCTGCTGCTGCTGCTGCAACTACTTGTCTTCACCCTCTCCGTCTCA
GCCATCCAAACTAGGGCTCACCCGCCTCCTCTGGTGTACATCCTCGCATCGACGGAGCAGACGTCGACGACAGCC
GTGAGCGAGGCGCTCCAGACTCTCGGATTCACATACTTGGATACGAGCGGGAATTCTTCCGGTTCGGTCCGAGAC
AGCGGCGATAGCGTATACACTTTCATCTCTCACGCCGACGACGACACCTCGTACAAACGTCTGGCTGCTTCCAGG
CCTCAGGCTAGATTCATCCTCCCGACGGATTCGTCCTCGGTCGTCGTCGAGGGCGCCGCTCGGCCGACACATACA
CATCATCTTGTTCGCCACTTCTTCGCGAGAGGGCGGCAAGCTCAGCTTCTGGAGCTTGATGTCGGCAGGAGGCTG
TCGGTTGAGCAGGCGGAGAACTGGGTCATGCTCTGCCGCTTCCTTGGACTGGGCTATAGCATGGTGGAGAGGATG
AAGCTCTGGTATTTTCCACGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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