Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3550
Gene name
Locationscaffold_280:645..1194
Strand+
Gene length (bp)549
Transcript length (bp)549
Coding sequence length (bp)546
Protein length (aa) 182

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular|Endoplasmic reticulum Signal peptide 0.1754 0.1507 0.6592 0.0951 0.1097 0.0571 0.7264 0.4199 0.2678 0.0215

SignalP

SignalP signal predicted Location Score
Yes 1 - 26 0.999708

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.15 0.0 0.73
CcL In ants, during behavior modification 0.24 0.0 0.81
CcD In ants, recently dead 0.23 0.0 0.89

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Orthologs

Orthofinder run ID4
Orthogroup7413
Change Orthofinder run
Species Protein ID
Ophiocordyceps camponoti-floridani Ophcf2|05703
Ophiocordyceps camponoti-rufipedis Ophun1|1355
Ophiocordyceps kimflemingae Ophio5|3550 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3550
MQTTQFRQLRLLLLLQLLVFTLSVSAIQTRAHPPPLVYILASTEQTSTTAVSEALQTLGFTYLDTSGNSSGSVRD
SGDSVYTFISHADDDTSYKRLAASRPQARFILPTDSSSVVVEGAARPTHTHHLVRHFFARGRQAQLLELDVGRRL
SVEQAENWVMLCRFLGLGYSMVERMKLWYFPR
Coding >Ophio5|3550
ATGCAGACGACACAGTTCCGTCAGCTGCGGCTGCTGCTGCTGCTGCAACTACTTGTCTTCACCCTCTCCGTCTCA
GCCATCCAAACTAGGGCTCACCCGCCTCCTCTGGTGTACATCCTCGCATCGACGGAGCAGACGTCGACGACAGCC
GTGAGCGAGGCGCTCCAGACTCTCGGATTCACATACTTGGATACGAGCGGGAATTCTTCCGGTTCGGTCCGAGAC
AGCGGCGATAGCGTATACACTTTCATCTCTCACGCCGACGACGACACCTCGTACAAACGTCTGGCTGCTTCCAGG
CCTCAGGCTAGATTCATCCTCCCGACGGATTCGTCCTCGGTCGTCGTCGAGGGCGCCGCTCGGCCGACACATACA
CATCATCTTGTTCGCCACTTCTTCGCGAGAGGGCGGCAAGCTCAGCTTCTGGAGCTTGATGTCGGCAGGAGGCTG
TCGGTTGAGCAGGCGGAGAACTGGGTCATGCTCTGCCGCTTCCTTGGACTGGGCTATAGCATGGTGGAGAGGATG
AAGCTCTGGTATTTTCCACGC
Transcript >Ophio5|3550
ATGCAGACGACACAGTTCCGTCAGCTGCGGCTGCTGCTGCTGCTGCAACTACTTGTCTTCACCCTCTCCGTCTCA
GCCATCCAAACTAGGGCTCACCCGCCTCCTCTGGTGTACATCCTCGCATCGACGGAGCAGACGTCGACGACAGCC
GTGAGCGAGGCGCTCCAGACTCTCGGATTCACATACTTGGATACGAGCGGGAATTCTTCCGGTTCGGTCCGAGAC
AGCGGCGATAGCGTATACACTTTCATCTCTCACGCCGACGACGACACCTCGTACAAACGTCTGGCTGCTTCCAGG
CCTCAGGCTAGATTCATCCTCCCGACGGATTCGTCCTCGGTCGTCGTCGAGGGCGCCGCTCGGCCGACACATACA
CATCATCTTGTTCGCCACTTCTTCGCGAGAGGGCGGCAAGCTCAGCTTCTGGAGCTTGATGTCGGCAGGAGGCTG
TCGGTTGAGCAGGCGGAGAACTGGGTCATGCTCTGCCGCTTCCTTGGACTGGGCTATAGCATGGTGGAGAGGATG
AAGCTCTGGTATTTTCCACGCTGA
Gene >Ophio5|3550
ATGCAGACGACACAGTTCCGTCAGCTGCGGCTGCTGCTGCTGCTGCAACTACTTGTCTTCACCCTCTCCGTCTCA
GCCATCCAAACTAGGGCTCACCCGCCTCCTCTGGTGTACATCCTCGCATCGACGGAGCAGACGTCGACGACAGCC
GTGAGCGAGGCGCTCCAGACTCTCGGATTCACATACTTGGATACGAGCGGGAATTCTTCCGGTTCGGTCCGAGAC
AGCGGCGATAGCGTATACACTTTCATCTCTCACGCCGACGACGACACCTCGTACAAACGTCTGGCTGCTTCCAGG
CCTCAGGCTAGATTCATCCTCCCGACGGATTCGTCCTCGGTCGTCGTCGAGGGCGCCGCTCGGCCGACACATACA
CATCATCTTGTTCGCCACTTCTTCGCGAGAGGGCGGCAAGCTCAGCTTCTGGAGCTTGATGTCGGCAGGAGGCTG
TCGGTTGAGCAGGCGGAGAACTGGGTCATGCTCTGCCGCTTCCTTGGACTGGGCTATAGCATGGTGGAGAGGATG
AAGCTCTGGTATTTTCCACGCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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