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| Protein ID | Ophio5|3541 |
| Gene name | |
| Location | scaffold_28:58546..59836 |
| Strand | + |
| Gene length (bp) | 1290 |
| Transcript length (bp) | 621 |
| Coding sequence length (bp) | 618 |
| Protein length (aa) | 206 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01775 | Ribosomal_L18A | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | 3.2E-53 | 4 | 126 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CX23|RL20A_YEAST | 60S ribosomal protein L20-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL20A PE=1 SV=1 | 1 | 139 | 3.0E-68 |
| sp|P0CX24|RL20B_YEAST | 60S ribosomal protein L20-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL20B PE=1 SV=1 | 1 | 139 | 3.0E-68 |
| sp|P0CT69|RL20B_SCHPO | 60S ribosomal protein L20-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2002 PE=1 SV=1 | 4 | 139 | 1.0E-63 |
| sp|P0CT68|RL20A_SCHPO | 60S ribosomal protein L20-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2001 PE=1 SV=1 | 4 | 139 | 1.0E-63 |
| sp|Q8WQI7|RL18A_SPOFR | 60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1 | 2 | 138 | 2.0E-55 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CX23|RL20A_YEAST | 60S ribosomal protein L20-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL20A PE=1 SV=1 | 1 | 139 | 3.0E-68 |
| sp|P0CX24|RL20B_YEAST | 60S ribosomal protein L20-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL20B PE=1 SV=1 | 1 | 139 | 3.0E-68 |
| sp|P0CT69|RL20B_SCHPO | 60S ribosomal protein L20-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2002 PE=1 SV=1 | 4 | 139 | 1.0E-63 |
| sp|P0CT68|RL20A_SCHPO | 60S ribosomal protein L20-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2001 PE=1 SV=1 | 4 | 139 | 1.0E-63 |
| sp|Q8WQI7|RL18A_SPOFR | 60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1 | 2 | 138 | 2.0E-55 |
| sp|O57561|RL18A_SALSA | 60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1 | 2 | 138 | 1.0E-53 |
| sp|P41093|RL18A_DROME | 60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1 | 2 | 143 | 6.0E-53 |
| sp|Q90YU9|RL18A_ICTPU | 60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1 | 2 | 126 | 1.0E-52 |
| sp|Q7ZWJ4|RL18A_DANRE | 60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1 | 2 | 138 | 3.0E-52 |
| sp|Q3T003|RL18A_BOVIN | 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1 | 2 | 138 | 3.0E-51 |
| sp|Q02543|RL18A_HUMAN | 60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2 | 2 | 138 | 3.0E-51 |
| sp|P62718|RL18A_RAT | 60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1 | 2 | 129 | 6.0E-51 |
| sp|P62717|RL18A_MOUSE | 60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1 | 2 | 129 | 6.0E-51 |
| sp|O44480|RL18A_CAEEL | 60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=3 SV=2 | 4 | 137 | 1.0E-47 |
| sp|Q54MK8|RL18A_DICDI | 60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2 | 4 | 129 | 1.0E-46 |
| sp|P51418|R18A2_ARATH | 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=2 SV=2 | 3 | 129 | 5.0E-46 |
| sp|Q8L7K0|R18A1_ARATH | 60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA PE=2 SV=1 | 3 | 129 | 3.0E-45 |
| sp|Q9ATF5|RL18A_CASSA | 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1 | 3 | 129 | 4.0E-45 |
| sp|Q943F3|RL18A_ORYSJ | 60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=1 SV=1 | 3 | 129 | 2.0E-44 |
| sp|Q9LUD4|R18A3_ARATH | 60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1 | 3 | 129 | 9.0E-44 |
| sp|P0DJ18|RL18A_TETTH | 60S ribosomal protein L18a OS=Tetrahymena thermophila GN=RPL18A PE=1 SV=1 | 3 | 138 | 3.0E-32 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005840 | ribosome | Yes |
| GO:0003735 | structural constituent of ribosome | Yes |
| GO:0006412 | translation | Yes |
| GO:0006518 | peptide metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0043226 | organelle | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0005575 | cellular_component | No |
| GO:0005198 | structural molecule activity | No |
| GO:0043043 | peptide biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0043604 | amide biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 57 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 523.69 | 266.54 | 780.85 |
| CcL | In ants, during behavior modification | 1148.81 | 364.49 | 1933.12 |
| CcD | In ants, recently dead | 1106.65 | 484.93 | 1728.36 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.009968 | yes |
| SC16a | CcD | 0.002236 | yes |
| CcL | CcD | 0.925048 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3541 MGRLQEYEVIGRHLPTESNPTPDMYRMTIFAPNQTVAKSRFWYFLRGLRKVKKATGEIVSIKTLHEKHPQKVKNF GIWLRYDSRSGTHNMYKEYREMSRVDAVEALYADMAARHRARFRSIHILRVVELEKTEDIKRPFPAFEGGWARLR MVPKQTKQKFPLALGHGGQIVRCDKLVASSGRSLGKRHDTGNGKASFTARLGPVDT |
| Coding | >Ophio5|3541 ATGGGTCGTCTTCAGGAGTACGAGGTCATCGGGCGCCATCTGCCCACCGAGTCCAACCCGACGCCGGACATGTAC CGGATGACCATCTTTGCGCCCAACCAGACCGTGGCCAAGTCCAGATTCTGGTACTTCTTGCGAGGCCTGCGCAAG GTCAAGAAGGCCACCGGCGAGATCGTCAGCATCAAGACGCTGCACGAGAAGCACCCCCAGAAGGTCAAGAACTTT GGCATCTGGCTTCGCTACGACTCGCGCTCTGGCACGCACAACATGTACAAGGAGTATCGTGAGATGTCGCGTGTC GATGCTGTCGAGGCACTGTATGCCGACATGGCTGCCCGCCACCGCGCCCGCTTCAGGTCGATTCACATCCTCCGC GTTGTCGAGCTCGAGAAGACCGAGGATATCAAGCGACCATTTCCTGCTTTCGAGGGCGGTTGGGCAAGGCTGCGA ATGGTGCCAAAACAAACCAAACAAAAATTTCCTCTAGCCTTGGGCCATGGTGGACAGATAGTACGTTGTGATAAG CTCGTGGCGAGCTCTGGGCGGTCTCTAGGCAAGAGACATGATACTGGTAACGGCAAGGCCTCTTTCACGGCGAGG CTTGGCCCCGTGGATACC |
| Transcript | >Ophio5|3541 ATGGGTCGTCTTCAGGAGTACGAGGTCATCGGGCGCCATCTGCCCACCGAGTCCAACCCGACGCCGGACATGTAC CGGATGACCATCTTTGCGCCCAACCAGACCGTGGCCAAGTCCAGATTCTGGTACTTCTTGCGAGGCCTGCGCAAG GTCAAGAAGGCCACCGGCGAGATCGTCAGCATCAAGACGCTGCACGAGAAGCACCCCCAGAAGGTCAAGAACTTT GGCATCTGGCTTCGCTACGACTCGCGCTCTGGCACGCACAACATGTACAAGGAGTATCGTGAGATGTCGCGTGTC GATGCTGTCGAGGCACTGTATGCCGACATGGCTGCCCGCCACCGCGCCCGCTTCAGGTCGATTCACATCCTCCGC GTTGTCGAGCTCGAGAAGACCGAGGATATCAAGCGACCATTTCCTGCTTTCGAGGGCGGTTGGGCAAGGCTGCGA ATGGTGCCAAAACAAACCAAACAAAAATTTCCTCTAGCCTTGGGCCATGGTGGACAGATAGTACGTTGTGATAAG CTCGTGGCGAGCTCTGGGCGGTCTCTAGGCAAGAGACATGATACTGGTAACGGCAAGGCCTCTTTCACGGCGAGG CTTGGCCCCGTGGATACCTAG |
| Gene | >Ophio5|3541 ATGGGTAAGTTTGTTTTCCATTTCCTGTCCGGCTGTCATTCCGCGCTGCGCTGCGCCCCGGTATCGAGGTTAGAG AACGATGCCACGGCGCTCGACGGCATAGCATACCTCCAACCCATAGATGTCGATCACAGAAAACGGCGAAATCCT TTACAACGAGCTGCGCCATGTTTAATCGGCAAGCATTCGCGGCTACTTCGTGGCTTCCAGGTCGTCCAGGCATGG GAGGAGGCTTCTCAGCACTGGGCGCGGACATGCACCATCCCATCGCCTTGGGCTTCGACAACGAGACAACAGACG CGACTGATTACTGCCCTCTCCGCTCTCGAAATACTCATACCGGGCACCATTTCGTCGAGGACATACAAAACTGAT GACTCTTTTCAACAGGTCGTCTTCAGGAGTACGAGGTCATCGGGCGCCATCTGCCCACCGAGTCCAACCCGACGC CGGACATGTACCGGATGACCATCTTTGCGCCCAACCAGACCGTGGCCAAGTCCAGATTCTGGTACTTCTTGCGAG GCCTGCGCAAGGTCAAGAAGGCCACCGGCGAGATCGTCAGCATCAAGACGGTATGGCGTCATTCGTCAATGACTT AAGCGGCAAGATGGGGGCTCACATAGGATTTAGCTGCACGAGAAGCACCCCCAGAAGGTCAAGAACTTTGGCATC TGGCTTCGCTACGACTCGCGCTCTGGCACGCACAACATGTACAAGGAGTATCGTGAGATGTCGCGTGTCGATGCT GTCGAGGCACTGTATGCCGACATGGCTGCCCGCCACCGCGCCCGCTTCAGGTCGATTCACGTATGTGCAGCTGGT TGCCTTCTTCTATTGGCGGCTACTCGCTGACCAGTCACAGATCCTCCGCGTTGTCGAGCTCGAGAAGACCGAGGA TATCAAGCGACCGTACATCAAGCAGCTCGTCACCAAGAACCTCCGATTCCCTCTTCCCCACCGCATCAGCAAGGG CTCCAACCAGAAGCTGTTCAGCGCAACGCGTCCGTCTACCTTTGCTTAGATTTCCTGCTTTCGAGGGCGGTTGGG CAAGGTCTGCGGGTGTTCCCTACGGTTCATGGAAATATCAAGTTCAATGCCTGACGTCGCAGGCTGCGAATGGTG CCAAAACAAACCAAACAAAAATTTCCTCTAGCCTTGGGCCATGGTGGACAGATAGTACGTTGTGATAAGCTCGTG GCGAGCTCTGGGCGGTCTCTAGGCAAGAGACATGATACTGGTAACGGCAAGGCCTCTTTCACGGCGAGGCTTGGC CCCGTGGATACCTAG |