Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3533
Gene name
Locationscaffold_28:37758..38558
Strand-
Gene length (bp)800
Transcript length (bp)579
Coding sequence length (bp)576
Protein length (aa) 192

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03911 Sec61_beta Sec61beta family 2.4E-18 144 184

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9HFC7|SC61B_YARLI Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SBH1 PE=3 SV=1 104 190 1.0E-30
sp|Q8J2P4|SC61B_KLULA Protein transport protein Sec61 subunit beta OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SBH1 PE=3 SV=1 109 187 8.0E-27
sp|P52871|SC6B2_YEAST Protein transport protein SBH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH2 PE=1 SV=1 107 187 4.0E-25
sp|O43002|SC61B_SCHPO Protein transport protein sec61 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sbh1 PE=3 SV=1 91 192 8.0E-21
sp|P52870|SC6B1_YEAST Protein transport protein SBH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH1 PE=1 SV=1 104 186 6.0E-18
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9HFC7|SC61B_YARLI Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SBH1 PE=3 SV=1 104 190 1.0E-30
sp|Q8J2P4|SC61B_KLULA Protein transport protein Sec61 subunit beta OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SBH1 PE=3 SV=1 109 187 8.0E-27
sp|P52871|SC6B2_YEAST Protein transport protein SBH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH2 PE=1 SV=1 107 187 4.0E-25
sp|O43002|SC61B_SCHPO Protein transport protein sec61 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sbh1 PE=3 SV=1 91 192 8.0E-21
sp|P52870|SC6B1_YEAST Protein transport protein SBH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH1 PE=1 SV=1 104 186 6.0E-18
sp|Q5RB31|SC61B_PONAB Protein transport protein Sec61 subunit beta OS=Pongo abelii GN=SEC61B PE=3 SV=3 88 188 2.0E-12
sp|P60468|SC61B_HUMAN Protein transport protein Sec61 subunit beta OS=Homo sapiens GN=SEC61B PE=1 SV=2 88 188 2.0E-12
sp|P60467|SC61B_CANLF Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris GN=SEC61B PE=1 SV=2 88 188 2.0E-12
sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3 88 188 6.0E-12
sp|Q54YR4|SC61B_DICDI Protein transport protein Sec61 subunit beta OS=Dictyostelium discoideum GN=sec61b PE=3 SV=1 132 188 4.0E-08
sp|P38389|SC61B_ARATH Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=1 SV=1 148 186 9.0E-07
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

Domain # Start End Length
1 161 183 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3533
MLRLAKARERMALRRDPGGGYSNSVNVAAADQHFAGRRTLLRWRLHASLRLPASPHLVDHEIRPGLFQKKAKSGS
STVTMSSSRPSSPANSPATASGVSSGRHSSPTPPGGARTAIRRRAAADQKEKIANARPTSTRAAGAGGSSSTMLR
LYTDESPGLKVDPVIVLVLSLVFIFSVVALHIIAKITRRFSS
Coding >Ophio5|3533
ATGCTCCGTTTAGCGAAGGCTCGAGAGAGAATGGCGTTGAGAAGAGATCCGGGGGGTGGATACTCGAACTCGGTC
AACGTGGCTGCGGCGGATCAACATTTCGCCGGCCGCCGCACCCTTCTCCGTTGGAGACTGCACGCAAGTCTTCGT
CTGCCCGCGTCGCCGCACCTTGTCGACCACGAAATTCGACCAGGTCTGTTTCAAAAGAAAGCGAAGAGCGGCTCA
AGCACCGTGACGATGTCTTCTTCACGTCCCTCGTCCCCCGCGAACTCGCCGGCGACGGCCAGCGGCGTCAGCAGC
GGCCGCCACTCGTCGCCGACGCCCCCCGGCGGTGCCAGGACTGCGATCCGGCGGCGGGCGGCGGCGGACCAGAAG
GAGAAGATTGCCAATGCTCGGCCGACGAGCACGAGGGCTGCCGGCGCTGGAGGGTCCAGCAGCACCATGCTTAGG
CTGTACACGGATGAATCGCCCGGGCTCAAGGTCGACCCCGTCATCGTCTTGGTTCTCTCTCTCGTCTTCATCTTC
AGTGTTGTCGCTTTGCACATCATTGCCAAGATTACGCGACGATTCTCGAGC
Transcript >Ophio5|3533
ATGCTCCGTTTAGCGAAGGCTCGAGAGAGAATGGCGTTGAGAAGAGATCCGGGGGGTGGATACTCGAACTCGGTC
AACGTGGCTGCGGCGGATCAACATTTCGCCGGCCGCCGCACCCTTCTCCGTTGGAGACTGCACGCAAGTCTTCGT
CTGCCCGCGTCGCCGCACCTTGTCGACCACGAAATTCGACCAGGTCTGTTTCAAAAGAAAGCGAAGAGCGGCTCA
AGCACCGTGACGATGTCTTCTTCACGTCCCTCGTCCCCCGCGAACTCGCCGGCGACGGCCAGCGGCGTCAGCAGC
GGCCGCCACTCGTCGCCGACGCCCCCCGGCGGTGCCAGGACTGCGATCCGGCGGCGGGCGGCGGCGGACCAGAAG
GAGAAGATTGCCAATGCTCGGCCGACGAGCACGAGGGCTGCCGGCGCTGGAGGGTCCAGCAGCACCATGCTTAGG
CTGTACACGGATGAATCGCCCGGGCTCAAGGTCGACCCCGTCATCGTCTTGGTTCTCTCTCTCGTCTTCATCTTC
AGTGTTGTCGCTTTGCACATCATTGCCAAGATTACGCGACGATTCTCGAGCTAG
Gene >Ophio5|3533
ATGCTCCGTTTAGCGAAGGCTCGAGAGAGAATGGCGTTGAGAAGAGATCCGGGGGGTGGATACTCGAACTCGGTC
AACGTGGCTGCGGCGGATCAACATTTCGCCGGCCGCCGCACCCTTCTCCGTTGGAGACTGTGACTGTGGCCTCAT
CTCTGCCACCCGAAATTCAAACCAGGCACGCAAGTCTTCGTCTGCCCGCGTCGCCGCACCTTGTCGACCACGAAA
TTCGACCAGGTCTGTTTCAAAAGAAAGCGAAGAGCGGCTCAAGCACCGTGACGATGGTATGGCTGGATAGCGCCT
CATTCTGTCGAGAGGCCCTGGATTACGGGATGCTGACTAGACCAGTCTTCTTCACGTCCCTCGTCCCCCGCGAAC
TCGCCGGCGACGGCCAGCGGCGTCAGCAGCGGCCGCCACTCGTCGCCGACGCCCCCCGGCGGTGCCAGGACTGCG
ATCCGGCGGCGGGCGGCGGCGGACCAGAAGGAGAAGATTGCCAATGCTCGGCCGACGAGCACGAGGGCTGCCGGC
GCTGGAGGGTCCAGCAGCACCATGCTTAGTAGGTCGCACCCGCTGAGCTCGGCCTGTCTGATGATGAGTTTTAAC
GCTGGTCTCACGTAGGGCTGTACACGGATGAATCGCCCGGGCTCAAGGTCGACCCCGTCATCGTCTTGGTTCTCT
CTCTCGTCTTCATCTTCAGTGTTGTCGCTTTGCACAGTGAGTGGATCTCGCTTGTTTTCTTATGACGGCACGTCT
AACGGGCATGTATAGTCATTGCCAAGATTACGCGACGATTCTCGAGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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