Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3529
Gene name
Locationscaffold_28:27840..29397
Strand+
Gene length (bp)1557
Transcript length (bp)1371
Coding sequence length (bp)1368
Protein length (aa) 456

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 85.17 46.31 124.04
CcL In ants, during behavior modification 28.50 13.83 43.17
CcD In ants, recently dead 19.66 8.88 30.45

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.177405 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3529
MRLGASSVLVACLCVLATGLAREGPDHELYARHRAPPHRFRMFRSASFGRMAHSRNAGSGGNAQQNSGFNDVGNF
QNLNGNGNGNGNGNRNNGGGNVQNLNGNGNGNNFQANNQGAGAVTVTQTLCSPNDRQTDIKVITETFTETKTVLA
NAAAATGVSGSQNANVINNGGFGPQNLNNNVNNPGGSNLQNGAIVNNNNNRSVNGNGGSAVVLSGQNQNGVIGNN
INNQGINGNGGSTVILSGQNQNGGGIALINGGGGNNAAVGNGVELINLSNQGVVNSGVRVVNGQSQCVINGVVMG
VLQDNNNNNNNQQAQSSVSQAANGNQGAALKTIPLANIGLSSPSTTLTTPPPSAATQPPQQQQQQQQQQQQQQQQ
QQQQQRQQQQQQQKQPPPPPPAQVQAPQDVQPPPAQASQSTAVPPPSNLAPPPPSNTAPPGGNSNNVVLSSGLDL
GALGPK
Coding >Ophio5|3529
ATGCGTCTCGGGGCTTCCAGCGTCCTGGTTGCATGCCTTTGTGTGCTGGCCACAGGGCTCGCTCGTGAAGGACCA
GATCACGAGCTGTATGCGAGGCATAGGGCCCCCCCCCACCGCTTTCGCATGTTCAGAAGTGCGAGCTTCGGTCGT
ATGGCCCATAGCCGAAATGCAGGTTCCGGAGGCAACGCCCAACAAAATTCAGGCTTTAACGACGTCGGCAATTTT
CAGAATCTCAACGGCAACGGCAACGGCAACGGCAACGGCAACCGCAACAATGGCGGTGGCAATGTTCAGAATCTC
AACGGCAACGGCAACGGCAACAACTTCCAAGCCAATAATCAGGGCGCCGGCGCCGTGACGGTGACGCAAACCCTT
TGTTCGCCGAACGATCGCCAAACCGACATCAAGGTCATCACAGAGACTTTTACCGAGACCAAGACCGTGCTTGCA
AATGCTGCCGCCGCCACCGGCGTCTCTGGGTCACAAAACGCCAATGTCATCAACAACGGCGGCTTTGGGCCACAA
AACTTGAACAACAATGTGAACAATCCCGGCGGCTCCAATCTTCAAAATGGCGCTATCGTCAACAACAATAACAAT
CGAAGCGTCAACGGCAACGGCGGCAGCGCCGTTGTCCTCTCCGGGCAGAATCAAAACGGCGTTATTGGCAACAAC
ATAAATAATCAAGGCATCAACGGCAACGGCGGCAGCACCGTTATCCTCTCCGGACAGAACCAAAACGGCGGTGGC
ATCGCCTTAATCAATGGCGGTGGTGGCAATAACGCCGCGGTGGGCAATGGTGTGGAGCTCATCAATCTTTCCAAT
CAGGGCGTCGTCAACAGCGGCGTCAGGGTCGTCAATGGTCAGAGCCAGTGCGTCATAAACGGAGTCGTCATGGGC
GTCCTCCAGGACAATAACAACAACAACAACAACCAACAGGCACAGTCTTCCGTCTCGCAAGCAGCGAATGGCAAC
CAGGGAGCGGCACTTAAGACTATACCTTTGGCCAATATCGGGCTCAGCTCCCCCTCCACGACCTTGACAACGCCG
CCGCCGTCTGCAGCTACGCAGCCGCCACAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAG
CAGCAGCAGCAACAGCGGCAGCAGCAACAGCAGCAACAGAAGCAACCGCCGCCGCCGCCGCCGGCTCAGGTTCAG
GCCCCTCAGGATGTACAGCCTCCGCCGGCTCAGGCGTCCCAGTCGACGGCCGTTCCCCCCCCCAGCAACTTGGCC
CCTCCTCCTCCCAGCAACACGGCCCCCCCGGGGGGTAATTCGAATAACGTGGTACTGAGCTCCGGCCTTGACTTA
GGAGCTCTCGGGCCGAAA
Transcript >Ophio5|3529
ATGCGTCTCGGGGCTTCCAGCGTCCTGGTTGCATGCCTTTGTGTGCTGGCCACAGGGCTCGCTCGTGAAGGACCA
GATCACGAGCTGTATGCGAGGCATAGGGCCCCCCCCCACCGCTTTCGCATGTTCAGAAGTGCGAGCTTCGGTCGT
ATGGCCCATAGCCGAAATGCAGGTTCCGGAGGCAACGCCCAACAAAATTCAGGCTTTAACGACGTCGGCAATTTT
CAGAATCTCAACGGCAACGGCAACGGCAACGGCAACGGCAACCGCAACAATGGCGGTGGCAATGTTCAGAATCTC
AACGGCAACGGCAACGGCAACAACTTCCAAGCCAATAATCAGGGCGCCGGCGCCGTGACGGTGACGCAAACCCTT
TGTTCGCCGAACGATCGCCAAACCGACATCAAGGTCATCACAGAGACTTTTACCGAGACCAAGACCGTGCTTGCA
AATGCTGCCGCCGCCACCGGCGTCTCTGGGTCACAAAACGCCAATGTCATCAACAACGGCGGCTTTGGGCCACAA
AACTTGAACAACAATGTGAACAATCCCGGCGGCTCCAATCTTCAAAATGGCGCTATCGTCAACAACAATAACAAT
CGAAGCGTCAACGGCAACGGCGGCAGCGCCGTTGTCCTCTCCGGGCAGAATCAAAACGGCGTTATTGGCAACAAC
ATAAATAATCAAGGCATCAACGGCAACGGCGGCAGCACCGTTATCCTCTCCGGACAGAACCAAAACGGCGGTGGC
ATCGCCTTAATCAATGGCGGTGGTGGCAATAACGCCGCGGTGGGCAATGGTGTGGAGCTCATCAATCTTTCCAAT
CAGGGCGTCGTCAACAGCGGCGTCAGGGTCGTCAATGGTCAGAGCCAGTGCGTCATAAACGGAGTCGTCATGGGC
GTCCTCCAGGACAATAACAACAACAACAACAACCAACAGGCACAGTCTTCCGTCTCGCAAGCAGCGAATGGCAAC
CAGGGAGCGGCACTTAAGACTATACCTTTGGCCAATATCGGGCTCAGCTCCCCCTCCACGACCTTGACAACGCCG
CCGCCGTCTGCAGCTACGCAGCCGCCACAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAG
CAGCAGCAGCAACAGCGGCAGCAGCAACAGCAGCAACAGAAGCAACCGCCGCCGCCGCCGCCGGCTCAGGTTCAG
GCCCCTCAGGATGTACAGCCTCCGCCGGCTCAGGCGTCCCAGTCGACGGCCGTTCCCCCCCCCAGCAACTTGGCC
CCTCCTCCTCCCAGCAACACGGCCCCCCCGGGGGGTAATTCGAATAACGTGGTACTGAGCTCCGGCCTTGACTTA
GGAGCTCTCGGGCCGAAATAG
Gene >Ophio5|3529
ATGCGTCTCGGGGCTTCCAGCGTCCTGGTTGCATGCCTTTGTGTGCTGGTAGCCGCCTCCCTCCTCATGTCGTTG
TCCTTTTCCCGCTTGGCTGACTCTAGGGATTAGGCCACAGGGCTCGCTCGTGAAGGACCAGATCACGAGCTGTAT
GCGAGGCATAGGGCCCCCCCCCACCGCTTTCGCATGTTCAGAAGTGCGAGCTTCGGTCGTATGGCCCATAGCCGA
AATGCAGGTTCCGGAGGCAACGCCCAACAAAATTCAGGCTTTAACGACGTCGGCAATTTTCAGAATCTCAACGGC
AACGGCAACGGCAACGGCAACGGCAACCGCAACAATGGCGGTGGCAATGTTCAGAATCTCAACGGCAACGGCAAC
GGCAACAACTTCCAAGCCAATAATCAGGGCGCCGGCGCCGTGACGGTGACGCAAACCCTTTGTTCGGTAAGATCC
TCGAGACTGTGGATGACCATTTCGACGAGCCCGCTAACGTAGAGAAGCCGAACGATCGCCAAACCGACATCAAGG
TCATCACAGAGACTTTTACCGAGACCAAGACCGTGCTTGCAAATGCTGTATGTATCAGGCGTCTATATCCTTGTC
AGTCAGACCAGAAGCGTATGTACTGACTCTGGGCAACAACAGGCCGCCGCCACCGGCGTCTCTGGGTCACAAAAC
GCCAATGTCATCAACAACGGCGGCTTTGGGCCACAAAACTTGAACAACAATGTGAACAATCCCGGCGGCTCCAAT
CTTCAAAATGGCGCTATCGTCAACAACAATAACAATCGAAGCGTCAACGGCAACGGCGGCAGCGCCGTTGTCCTC
TCCGGGCAGAATCAAAACGGCGTTATTGGCAACAACATAAATAATCAAGGCATCAACGGCAACGGCGGCAGCACC
GTTATCCTCTCCGGACAGAACCAAAACGGCGGTGGCATCGCCTTAATCAATGGCGGTGGTGGCAATAACGCCGCG
GTGGGCAATGGTGTGGAGCTCATCAATCTTTCCAATCAGGGCGTCGTCAACAGCGGCGTCAGGGTCGTCAATGGT
CAGAGCCAGTGCGTCATAAACGGAGTCGTCATGGGCGTCCTCCAGGACAATAACAACAACAACAACAACCAACAG
GCACAGTCTTCCGTCTCGCAAGCAGCGAATGGCAACCAGGGAGCGGCACTTAAGACTATACCTTTGGCCAATATC
GGGCTCAGCTCCCCCTCCACGACCTTGACAACGCCGCCGCCGTCTGCAGCTACGCAGCCGCCACAGCAACAGCAG
CAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCAACAGCGGCAGCAGCAACAGCAGCAACAG
AAGCAACCGCCGCCGCCGCCGCCGGCTCAGGTTCAGGCCCCTCAGGATGTACAGCCTCCGCCGGCTCAGGCGTCC
CAGTCGACGGCCGTTCCCCCCCCCAGCAACTTGGCCCCTCCTCCTCCCAGCAACACGGCCCCCCCGGGGGGTAAT
TCGAATAACGTGGTACTGAGCTCCGGCCTTGACTTAGGAGCTCTCGGGCCGAAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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