Protein ID | Ophio5|3529 |
Gene name | |
Location | scaffold_28:27840..29397 |
Strand | + |
Gene length (bp) | 1557 |
Transcript length (bp) | 1371 |
Coding sequence length (bp) | 1368 |
Protein length (aa) | 456 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 22 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 85.17 | 46.31 | 124.04 |
CcL | In ants, during behavior modification | 28.50 | 13.83 | 43.17 |
CcD | In ants, recently dead | 19.66 | 8.88 | 30.45 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.000286 | yes |
SC16a | CcD | 0.000286 | yes |
CcL | CcD | 0.177405 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|3529 MRLGASSVLVACLCVLATGLAREGPDHELYARHRAPPHRFRMFRSASFGRMAHSRNAGSGGNAQQNSGFNDVGNF QNLNGNGNGNGNGNRNNGGGNVQNLNGNGNGNNFQANNQGAGAVTVTQTLCSPNDRQTDIKVITETFTETKTVLA NAAAATGVSGSQNANVINNGGFGPQNLNNNVNNPGGSNLQNGAIVNNNNNRSVNGNGGSAVVLSGQNQNGVIGNN INNQGINGNGGSTVILSGQNQNGGGIALINGGGGNNAAVGNGVELINLSNQGVVNSGVRVVNGQSQCVINGVVMG VLQDNNNNNNNQQAQSSVSQAANGNQGAALKTIPLANIGLSSPSTTLTTPPPSAATQPPQQQQQQQQQQQQQQQQ QQQQQRQQQQQQQKQPPPPPPAQVQAPQDVQPPPAQASQSTAVPPPSNLAPPPPSNTAPPGGNSNNVVLSSGLDL GALGPK |
Coding | >Ophio5|3529 ATGCGTCTCGGGGCTTCCAGCGTCCTGGTTGCATGCCTTTGTGTGCTGGCCACAGGGCTCGCTCGTGAAGGACCA GATCACGAGCTGTATGCGAGGCATAGGGCCCCCCCCCACCGCTTTCGCATGTTCAGAAGTGCGAGCTTCGGTCGT ATGGCCCATAGCCGAAATGCAGGTTCCGGAGGCAACGCCCAACAAAATTCAGGCTTTAACGACGTCGGCAATTTT CAGAATCTCAACGGCAACGGCAACGGCAACGGCAACGGCAACCGCAACAATGGCGGTGGCAATGTTCAGAATCTC AACGGCAACGGCAACGGCAACAACTTCCAAGCCAATAATCAGGGCGCCGGCGCCGTGACGGTGACGCAAACCCTT TGTTCGCCGAACGATCGCCAAACCGACATCAAGGTCATCACAGAGACTTTTACCGAGACCAAGACCGTGCTTGCA AATGCTGCCGCCGCCACCGGCGTCTCTGGGTCACAAAACGCCAATGTCATCAACAACGGCGGCTTTGGGCCACAA AACTTGAACAACAATGTGAACAATCCCGGCGGCTCCAATCTTCAAAATGGCGCTATCGTCAACAACAATAACAAT CGAAGCGTCAACGGCAACGGCGGCAGCGCCGTTGTCCTCTCCGGGCAGAATCAAAACGGCGTTATTGGCAACAAC ATAAATAATCAAGGCATCAACGGCAACGGCGGCAGCACCGTTATCCTCTCCGGACAGAACCAAAACGGCGGTGGC ATCGCCTTAATCAATGGCGGTGGTGGCAATAACGCCGCGGTGGGCAATGGTGTGGAGCTCATCAATCTTTCCAAT CAGGGCGTCGTCAACAGCGGCGTCAGGGTCGTCAATGGTCAGAGCCAGTGCGTCATAAACGGAGTCGTCATGGGC GTCCTCCAGGACAATAACAACAACAACAACAACCAACAGGCACAGTCTTCCGTCTCGCAAGCAGCGAATGGCAAC CAGGGAGCGGCACTTAAGACTATACCTTTGGCCAATATCGGGCTCAGCTCCCCCTCCACGACCTTGACAACGCCG CCGCCGTCTGCAGCTACGCAGCCGCCACAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAG CAGCAGCAGCAACAGCGGCAGCAGCAACAGCAGCAACAGAAGCAACCGCCGCCGCCGCCGCCGGCTCAGGTTCAG GCCCCTCAGGATGTACAGCCTCCGCCGGCTCAGGCGTCCCAGTCGACGGCCGTTCCCCCCCCCAGCAACTTGGCC CCTCCTCCTCCCAGCAACACGGCCCCCCCGGGGGGTAATTCGAATAACGTGGTACTGAGCTCCGGCCTTGACTTA GGAGCTCTCGGGCCGAAA |
Transcript | >Ophio5|3529 ATGCGTCTCGGGGCTTCCAGCGTCCTGGTTGCATGCCTTTGTGTGCTGGCCACAGGGCTCGCTCGTGAAGGACCA GATCACGAGCTGTATGCGAGGCATAGGGCCCCCCCCCACCGCTTTCGCATGTTCAGAAGTGCGAGCTTCGGTCGT ATGGCCCATAGCCGAAATGCAGGTTCCGGAGGCAACGCCCAACAAAATTCAGGCTTTAACGACGTCGGCAATTTT CAGAATCTCAACGGCAACGGCAACGGCAACGGCAACGGCAACCGCAACAATGGCGGTGGCAATGTTCAGAATCTC AACGGCAACGGCAACGGCAACAACTTCCAAGCCAATAATCAGGGCGCCGGCGCCGTGACGGTGACGCAAACCCTT TGTTCGCCGAACGATCGCCAAACCGACATCAAGGTCATCACAGAGACTTTTACCGAGACCAAGACCGTGCTTGCA AATGCTGCCGCCGCCACCGGCGTCTCTGGGTCACAAAACGCCAATGTCATCAACAACGGCGGCTTTGGGCCACAA AACTTGAACAACAATGTGAACAATCCCGGCGGCTCCAATCTTCAAAATGGCGCTATCGTCAACAACAATAACAAT CGAAGCGTCAACGGCAACGGCGGCAGCGCCGTTGTCCTCTCCGGGCAGAATCAAAACGGCGTTATTGGCAACAAC ATAAATAATCAAGGCATCAACGGCAACGGCGGCAGCACCGTTATCCTCTCCGGACAGAACCAAAACGGCGGTGGC ATCGCCTTAATCAATGGCGGTGGTGGCAATAACGCCGCGGTGGGCAATGGTGTGGAGCTCATCAATCTTTCCAAT CAGGGCGTCGTCAACAGCGGCGTCAGGGTCGTCAATGGTCAGAGCCAGTGCGTCATAAACGGAGTCGTCATGGGC GTCCTCCAGGACAATAACAACAACAACAACAACCAACAGGCACAGTCTTCCGTCTCGCAAGCAGCGAATGGCAAC CAGGGAGCGGCACTTAAGACTATACCTTTGGCCAATATCGGGCTCAGCTCCCCCTCCACGACCTTGACAACGCCG CCGCCGTCTGCAGCTACGCAGCCGCCACAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAG CAGCAGCAGCAACAGCGGCAGCAGCAACAGCAGCAACAGAAGCAACCGCCGCCGCCGCCGCCGGCTCAGGTTCAG GCCCCTCAGGATGTACAGCCTCCGCCGGCTCAGGCGTCCCAGTCGACGGCCGTTCCCCCCCCCAGCAACTTGGCC CCTCCTCCTCCCAGCAACACGGCCCCCCCGGGGGGTAATTCGAATAACGTGGTACTGAGCTCCGGCCTTGACTTA GGAGCTCTCGGGCCGAAATAG |
Gene | >Ophio5|3529 ATGCGTCTCGGGGCTTCCAGCGTCCTGGTTGCATGCCTTTGTGTGCTGGTAGCCGCCTCCCTCCTCATGTCGTTG TCCTTTTCCCGCTTGGCTGACTCTAGGGATTAGGCCACAGGGCTCGCTCGTGAAGGACCAGATCACGAGCTGTAT GCGAGGCATAGGGCCCCCCCCCACCGCTTTCGCATGTTCAGAAGTGCGAGCTTCGGTCGTATGGCCCATAGCCGA AATGCAGGTTCCGGAGGCAACGCCCAACAAAATTCAGGCTTTAACGACGTCGGCAATTTTCAGAATCTCAACGGC AACGGCAACGGCAACGGCAACGGCAACCGCAACAATGGCGGTGGCAATGTTCAGAATCTCAACGGCAACGGCAAC GGCAACAACTTCCAAGCCAATAATCAGGGCGCCGGCGCCGTGACGGTGACGCAAACCCTTTGTTCGGTAAGATCC TCGAGACTGTGGATGACCATTTCGACGAGCCCGCTAACGTAGAGAAGCCGAACGATCGCCAAACCGACATCAAGG TCATCACAGAGACTTTTACCGAGACCAAGACCGTGCTTGCAAATGCTGTATGTATCAGGCGTCTATATCCTTGTC AGTCAGACCAGAAGCGTATGTACTGACTCTGGGCAACAACAGGCCGCCGCCACCGGCGTCTCTGGGTCACAAAAC GCCAATGTCATCAACAACGGCGGCTTTGGGCCACAAAACTTGAACAACAATGTGAACAATCCCGGCGGCTCCAAT CTTCAAAATGGCGCTATCGTCAACAACAATAACAATCGAAGCGTCAACGGCAACGGCGGCAGCGCCGTTGTCCTC TCCGGGCAGAATCAAAACGGCGTTATTGGCAACAACATAAATAATCAAGGCATCAACGGCAACGGCGGCAGCACC GTTATCCTCTCCGGACAGAACCAAAACGGCGGTGGCATCGCCTTAATCAATGGCGGTGGTGGCAATAACGCCGCG GTGGGCAATGGTGTGGAGCTCATCAATCTTTCCAATCAGGGCGTCGTCAACAGCGGCGTCAGGGTCGTCAATGGT CAGAGCCAGTGCGTCATAAACGGAGTCGTCATGGGCGTCCTCCAGGACAATAACAACAACAACAACAACCAACAG GCACAGTCTTCCGTCTCGCAAGCAGCGAATGGCAACCAGGGAGCGGCACTTAAGACTATACCTTTGGCCAATATC GGGCTCAGCTCCCCCTCCACGACCTTGACAACGCCGCCGCCGTCTGCAGCTACGCAGCCGCCACAGCAACAGCAG CAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCAACAGCGGCAGCAGCAACAGCAGCAACAG AAGCAACCGCCGCCGCCGCCGCCGGCTCAGGTTCAGGCCCCTCAGGATGTACAGCCTCCGCCGGCTCAGGCGTCC CAGTCGACGGCCGTTCCCCCCCCCAGCAACTTGGCCCCTCCTCCTCCCAGCAACACGGCCCCCCCGGGGGGTAAT TCGAATAACGTGGTACTGAGCTCCGGCCTTGACTTAGGAGCTCTCGGGCCGAAATAG |