Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3523
Gene name
Locationscaffold_28:11291..13298
Strand-
Gene length (bp)2007
Transcript length (bp)1896
Coding sequence length (bp)1893
Protein length (aa) 631

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02582 DUF155 RMND1/Sif2-Sif3/Mrx10, DUF155 3.3E-52 317 499

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q09877|SIF3_SCHPO Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 97 522 3.0E-84
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 315 552 1.0E-79
sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 98 550 5.0E-52
sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 289 543 2.0E-50
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 5 277 4.0E-26
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q09877|SIF3_SCHPO Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 97 522 3.0E-84
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 315 552 1.0E-79
sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 98 550 5.0E-52
sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 289 543 2.0E-50
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 5 277 4.0E-26
sp|Q8CI78|RMND1_MOUSE Required for meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Rmnd1 PE=1 SV=1 317 543 7.0E-20
sp|Q9NWS8|RMND1_HUMAN Required for meiotic nuclear division protein 1 homolog OS=Homo sapiens GN=RMND1 PE=1 SV=2 317 543 6.0E-19
sp|Q5RAR5|RMND1_PONAB Required for meiotic nuclear division protein 1 homolog OS=Pongo abelii GN=RMND1 PE=2 SV=1 317 543 4.0E-18
sp|Q05648|MRX10_YEAST MIOREX complex component 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRX10 PE=1 SV=1 317 540 6.0E-16
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 67 0.45

Transmembrane Domains

Domain # Start End Length
1 523 545 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3523
MSSGKQRPSVLVTDSRQRPNARTRRQDSSSASSGRTPMRFMTVDNVLQYNSQIPSGQPRGPPVPAQRSLPQAAGR
EPGRRVAAVGLPNGQSRTGQSMPSRTTKISEKLVLLPETDRGDQDEAEDEIESETVLARRLQEDENRPLKDEELD
VLRKRGGIRGKSFAERLPKVQRKDKVSRLTAYCTAQAFKVGATSEFLRKKHDAKTKLYDDCLYVIYALPLLNGTE
GYRVRGRPMLKTPGTGKTMLDLEIERSERRNHHEGYFEDDAYTNPESPERGSRAMPVFGDPSPDDEMQREHDDGI
RSHINRIAPDAKSFAEMFVFSYGVVVFWNFTEQQEKAILADLTFADAEDGISLLTRPFEQDTFETEEFHFEYSAD
VKRPRVFNDMITLMPRSDHMIKLTISHSIAQSTKLCFFEERMSETMLDAQHVPKTLALTGHLNMTRTEIVMILGR
LFKSRVDINLSSNILDVPNFFWDSEPTLHPLYAAVREYLEIDPRIKVLNERCRVFLDLAEILSDSVNDAKMSFIT
WIIIVLIVVSILVTVTEVGLRFGMLSKGYNKAQGLAGVAAVTWFGGQSPGAVHEMVLGPPPPADVDDMGKLALVL
GLQSNASFDDVRQGIVDLRRAAAARPGRRTG
Coding >Ophio5|3523
ATGTCGTCAGGAAAACAGCGACCCTCTGTACTGGTGACGGACTCGAGGCAGAGGCCCAACGCGAGAACGCGACGC
CAGGACTCGTCATCCGCGTCCAGTGGCCGGACGCCTATGCGATTCATGACGGTTGATAATGTCCTCCAATACAAC
TCGCAGATCCCTTCCGGCCAGCCGCGGGGCCCGCCCGTGCCCGCTCAGAGGTCGCTCCCCCAAGCCGCCGGCCGA
GAGCCAGGCCGGCGGGTCGCTGCTGTTGGGCTACCCAACGGTCAGTCGCGCACAGGACAGTCAATGCCGTCGAGA
ACAACCAAAATCAGCGAGAAGCTGGTTCTGCTACCCGAGACGGATCGCGGCGACCAAGACGAGGCCGAGGACGAG
ATCGAGAGCGAGACTGTTCTGGCCAGACGACTGCAGGAGGATGAGAACCGGCCGCTCAAGGACGAGGAGCTGGAT
GTGCTCAGGAAGAGAGGTGGCATACGCGGCAAAAGCTTTGCTGAGCGTCTTCCCAAAGTGCAGAGGAAAGACAAG
GTCAGCCGCCTAACGGCCTACTGCACTGCCCAGGCGTTCAAGGTCGGTGCCACATCCGAGTTCCTGAGGAAGAAG
CACGACGCCAAGACGAAACTCTACGACGACTGCCTCTACGTCATCTATGCCCTGCCCCTACTGAACGGCACAGAA
GGCTATCGGGTCCGCGGACGGCCCATGCTCAAGACTCCGGGGACTGGAAAAACTATGCTGGATCTCGAAATTGAG
CGAAGCGAGCGGCGAAACCATCACGAGGGATATTTTGAGGATGATGCATATACAAATCCCGAGAGCCCGGAGAGG
GGCAGCCGTGCGATGCCGGTCTTTGGCGACCCGTCTCCCGACGACGAGATGCAGAGAGAACACGACGACGGCATC
CGCTCACACATCAACCGCATTGCTCCCGACGCCAAGAGCTTTGCCGAGATGTTCGTCTTCTCTTACGGTGTTGTC
GTCTTCTGGAACTTTACGGAGCAGCAGGAAAAAGCCATCCTCGCAGACCTGACCTTTGCCGACGCCGAAGATGGC
ATCAGCCTCCTGACCAGGCCCTTTGAGCAAGACACGTTCGAGACGGAGGAGTTCCACTTCGAGTACAGCGCCGAC
GTCAAGCGCCCGCGCGTCTTCAACGACATGATTACGCTGATGCCGCGGTCGGACCACATGATCAAGTTGACCATC
AGCCACTCTATCGCACAGAGCACCAAGTTGTGTTTCTTTGAGGAGCGGATGAGCGAGACGATGCTGGACGCGCAG
CACGTGCCCAAGACGCTGGCCCTGACCGGGCATCTCAACATGACGAGGACGGAGATTGTCATGATACTTGGCAGG
CTGTTCAAAAGCCGCGTCGACATCAATCTATCGTCCAACATTCTCGACGTACCCAACTTCTTCTGGGATTCGGAA
CCGACGCTGCACCCGCTCTACGCGGCGGTGCGCGAGTACCTGGAGATTGACCCGCGCATCAAGGTACTGAACGAG
CGGTGCCGCGTCTTCCTCGATCTGGCCGAGATCCTCTCGGACTCGGTCAACGACGCCAAGATGAGCTTCATCACG
TGGATCATCATCGTCCTCATCGTCGTCAGCATTCTCGTCACCGTCACCGAAGTTGGGCTACGGTTCGGCATGCTT
AGCAAGGGTTACAACAAGGCCCAGGGCTTGGCGGGCGTCGCGGCCGTCACCTGGTTTGGGGGGCAAAGCCCGGGC
GCCGTCCACGAGATGGTGCTCGGACCGCCGCCACCGGCCGACGTGGACGACATGGGCAAGCTCGCGTTGGTGCTT
GGCCTGCAGTCCAACGCCAGCTTCGACGACGTTCGACAGGGCATCGTCGACTTGAGGCGGGCGGCGGCGGCGCGT
CCTGGGCGTCGCACCGGC
Transcript >Ophio5|3523
ATGTCGTCAGGAAAACAGCGACCCTCTGTACTGGTGACGGACTCGAGGCAGAGGCCCAACGCGAGAACGCGACGC
CAGGACTCGTCATCCGCGTCCAGTGGCCGGACGCCTATGCGATTCATGACGGTTGATAATGTCCTCCAATACAAC
TCGCAGATCCCTTCCGGCCAGCCGCGGGGCCCGCCCGTGCCCGCTCAGAGGTCGCTCCCCCAAGCCGCCGGCCGA
GAGCCAGGCCGGCGGGTCGCTGCTGTTGGGCTACCCAACGGTCAGTCGCGCACAGGACAGTCAATGCCGTCGAGA
ACAACCAAAATCAGCGAGAAGCTGGTTCTGCTACCCGAGACGGATCGCGGCGACCAAGACGAGGCCGAGGACGAG
ATCGAGAGCGAGACTGTTCTGGCCAGACGACTGCAGGAGGATGAGAACCGGCCGCTCAAGGACGAGGAGCTGGAT
GTGCTCAGGAAGAGAGGTGGCATACGCGGCAAAAGCTTTGCTGAGCGTCTTCCCAAAGTGCAGAGGAAAGACAAG
GTCAGCCGCCTAACGGCCTACTGCACTGCCCAGGCGTTCAAGGTCGGTGCCACATCCGAGTTCCTGAGGAAGAAG
CACGACGCCAAGACGAAACTCTACGACGACTGCCTCTACGTCATCTATGCCCTGCCCCTACTGAACGGCACAGAA
GGCTATCGGGTCCGCGGACGGCCCATGCTCAAGACTCCGGGGACTGGAAAAACTATGCTGGATCTCGAAATTGAG
CGAAGCGAGCGGCGAAACCATCACGAGGGATATTTTGAGGATGATGCATATACAAATCCCGAGAGCCCGGAGAGG
GGCAGCCGTGCGATGCCGGTCTTTGGCGACCCGTCTCCCGACGACGAGATGCAGAGAGAACACGACGACGGCATC
CGCTCACACATCAACCGCATTGCTCCCGACGCCAAGAGCTTTGCCGAGATGTTCGTCTTCTCTTACGGTGTTGTC
GTCTTCTGGAACTTTACGGAGCAGCAGGAAAAAGCCATCCTCGCAGACCTGACCTTTGCCGACGCCGAAGATGGC
ATCAGCCTCCTGACCAGGCCCTTTGAGCAAGACACGTTCGAGACGGAGGAGTTCCACTTCGAGTACAGCGCCGAC
GTCAAGCGCCCGCGCGTCTTCAACGACATGATTACGCTGATGCCGCGGTCGGACCACATGATCAAGTTGACCATC
AGCCACTCTATCGCACAGAGCACCAAGTTGTGTTTCTTTGAGGAGCGGATGAGCGAGACGATGCTGGACGCGCAG
CACGTGCCCAAGACGCTGGCCCTGACCGGGCATCTCAACATGACGAGGACGGAGATTGTCATGATACTTGGCAGG
CTGTTCAAAAGCCGCGTCGACATCAATCTATCGTCCAACATTCTCGACGTACCCAACTTCTTCTGGGATTCGGAA
CCGACGCTGCACCCGCTCTACGCGGCGGTGCGCGAGTACCTGGAGATTGACCCGCGCATCAAGGTACTGAACGAG
CGGTGCCGCGTCTTCCTCGATCTGGCCGAGATCCTCTCGGACTCGGTCAACGACGCCAAGATGAGCTTCATCACG
TGGATCATCATCGTCCTCATCGTCGTCAGCATTCTCGTCACCGTCACCGAAGTTGGGCTACGGTTCGGCATGCTT
AGCAAGGGTTACAACAAGGCCCAGGGCTTGGCGGGCGTCGCGGCCGTCACCTGGTTTGGGGGGCAAAGCCCGGGC
GCCGTCCACGAGATGGTGCTCGGACCGCCGCCACCGGCCGACGTGGACGACATGGGCAAGCTCGCGTTGGTGCTT
GGCCTGCAGTCCAACGCCAGCTTCGACGACGTTCGACAGGGCATCGTCGACTTGAGGCGGGCGGCGGCGGCGCGT
CCTGGGCGTCGCACCGGCTAG
Gene >Ophio5|3523
ATGTCGTCAGGAAAACAGCGACCCTCTGTACTGGTACGGCTCGATGATACTTCACGCGGTGTCTGCCGGCTGACT
TCTGGGATGCAGGTGACGGACTCGAGGCAGAGGCCCAACGCGAGAACGCGACGCCAGGACTCGTCATCCGCGTCC
AGTGGCCGGACGCCTATGCGATTCATGACGGTTGATAATGTCCTCCAATACAACTCGCAGATCCCTTCCGGCCAG
CCGCGGGGCCCGCCCGTGCCCGCTCAGAGGTCGCTCCCCCAAGCCGCCGGCCGAGAGCCAGGCCGGCGGGTCGCT
GCTGTTGGGCTACCCAACGGTCAGTCGCGCACAGGACAGTCAATGCCGTCGAGAACAACCAAAATCAGCGAGAAG
CTGGTTCTGCTACCCGAGACGGATCGCGGCGACCAAGACGAGGCCGAGGACGAGATCGAGAGCGAGACTGTTCTG
GCCAGACGACTGCAGGAGGATGAGAACCGGCCGCTCAAGGACGAGGAGCTGGATGTGCTCAGGAAGAGAGGTGGC
ATACGCGGCAAAAGCTTTGCTGAGCGTCTTCCCAAAGTGCAGAGGAAAGACAAGGTCAGCCGCCTAACGGCCTAC
TGCACTGCCCAGGCGTTCAAGGTCGGTGCCACATCCGAGTTCCTGAGGAAGAAGCACGACGCCAAGACGAAACTC
TACGACGACTGCCTCTACGTCATCTATGCCCTGCCCCTACTGAACGGCACAGAAGGCTATCGGGTCCGCGGACGG
CCCATGCTCAAGACTCCGGGGACTGGAAAAACTATGCTGGATCTCGAAATTGAGCGAAGCGAGCGGCGAAACCAT
CACGAGGGATATTTTGAGGATGATGCATATACAAATCCCGAGAGCCCGGAGAGGGGCAGCCGTGCGATGCCGGTC
TTTGGCGACCCGTCTCCCGACGACGAGATGCAGAGAGAACACGACGACGGCATCCGCTCACACATCAACCGCATT
GCTCCCGACGCCAAGAGCTTTGCCGAGATGTTCGTCTTCTCTTACGGTGTTGTCGTCTTCTGGAACTTTACGGAG
CAGCAGGAAAAAGCCATCCTCGCAGACCTGACCTTTGCCGACGCCGAAGATGGCATCAGCCTCCTGACCAGGCCC
TTTGAGCAAGACACGTTCGAGACGGAGGAGTTCCACTTCGAGTACAGCGCCGACGTCAAGCGCCCGCGCGTCTTC
AACGACATGATTACGCTGATGCCGCGGTCGGACCACATGATCAAGTTGACCATCAGCCACTCTATCGCACAGAGC
ACCAAGTTGTGTTTCTTTGAGGAGCGGATGAGCGAGACGATGCTGGACGCGCAGCACGTGCCCAAGACGCTGGCC
CTGACCGGGCATCTCAACATGACGAGGACGGAGATTGTCATGATACTTGGCAGGCTGTTCAAAAGCCGCGTCGAC
ATCAATCTATGTAATGCACCAGAGCTGCGACGTGAGAAATCAGGCATGGCTGACGAAATCGCTGCAGCGTCCAAC
ATTCTCGACGTACCCAACTTCTTCTGGGATTCGGAACCGACGCTGCACCCGCTCTACGCGGCGGTGCGCGAGTAC
CTGGAGATTGACCCGCGCATCAAGGTACTGAACGAGCGGTGCCGCGTCTTCCTCGATCTGGCCGAGATCCTCTCG
GACTCGGTCAACGACGCCAAGATGAGCTTCATCACGTGGATCATCATCGTCCTCATCGTCGTCAGCATTCTCGTC
ACCGTCACCGAAGTTGGGCTACGGTTCGGCATGCTTAGCAAGGGTTACAACAAGGCCCAGGGCTTGGCGGGCGTC
GCGGCCGTCACCTGGTTTGGGGGGCAAAGCCCGGGCGCCGTCCACGAGATGGTGCTCGGACCGCCGCCACCGGCC
GACGTGGACGACATGGGCAAGCTCGCGTTGGTGCTTGGCCTGCAGTCCAACGCCAGCTTCGACGACGTTCGACAG
GGCATCGTCGACTTGAGGCGGGCGGCGGCGGCGCGTCCTGGGCGTCGCACCGGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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