© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|350 |
| Gene name | |
| Location | scaffold_108:26771..29165 |
| Strand | + |
| Gene length (bp) | 2394 |
| Transcript length (bp) | 2394 |
| Coding sequence length (bp) | 2391 |
| Protein length (aa) | 797 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07522 | DRMBL | DNA repair metallo-beta-lactamase | 1.8E-35 | 610 | 743 |
| PF12706 | Lactamase_B_2 | Beta-lactamase superfamily domain | 4.1E-08 | 357 | 473 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10264|PSO2_SCHPO | DNA cross-link repair protein pso2/snm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pso2 PE=3 SV=3 | 225 | 768 | 2.0E-122 |
| sp|Q9JIC3|DCR1A_MOUSE | DNA cross-link repair 1A protein OS=Mus musculus GN=Dclre1a PE=1 SV=2 | 324 | 761 | 4.0E-73 |
| sp|Q5QJC4|DCR1A_CHICK | DNA cross-link repair 1A protein OS=Gallus gallus GN=DCLRE1A PE=1 SV=1 | 321 | 761 | 7.0E-73 |
| sp|Q38961|SNM1_ARATH | DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1 PE=2 SV=1 | 332 | 759 | 2.0E-72 |
| sp|Q6PJP8|DCR1A_HUMAN | DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=3 | 331 | 761 | 6.0E-71 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10264|PSO2_SCHPO | DNA cross-link repair protein pso2/snm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pso2 PE=3 SV=3 | 225 | 768 | 2.0E-122 |
| sp|Q9JIC3|DCR1A_MOUSE | DNA cross-link repair 1A protein OS=Mus musculus GN=Dclre1a PE=1 SV=2 | 324 | 761 | 4.0E-73 |
| sp|Q5QJC4|DCR1A_CHICK | DNA cross-link repair 1A protein OS=Gallus gallus GN=DCLRE1A PE=1 SV=1 | 321 | 761 | 7.0E-73 |
| sp|Q38961|SNM1_ARATH | DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1 PE=2 SV=1 | 332 | 759 | 2.0E-72 |
| sp|Q6PJP8|DCR1A_HUMAN | DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=3 | 331 | 761 | 6.0E-71 |
| sp|P30620|PSO2_YEAST | DNA cross-link repair protein PSO2/SNM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSO2 PE=1 SV=1 | 225 | 763 | 2.0E-54 |
| sp|Q86KS1|DCR1_DICDI | DNA cross-link repair 1 protein OS=Dictyostelium discoideum GN=dclre1 PE=3 SV=1 | 322 | 744 | 6.0E-45 |
| sp|Q5QJC3|DCR1B_CHICK | 5' exonuclease Apollo OS=Gallus gallus GN=DCLRE1B PE=2 SV=1 | 339 | 741 | 9.0E-32 |
| sp|Q9H816|DCR1B_HUMAN | 5' exonuclease Apollo OS=Homo sapiens GN=DCLRE1B PE=1 SV=1 | 339 | 741 | 3.0E-28 |
| sp|D2H8V8|DCR1B_AILME | 5' exonuclease Apollo OS=Ailuropoda melanoleuca GN=DCLRE1B PE=3 SV=1 | 339 | 632 | 5.0E-28 |
| sp|Q8C7W7|DCR1B_MOUSE | 5' exonuclease Apollo OS=Mus musculus GN=Dclre1b PE=1 SV=2 | 339 | 741 | 6.0E-28 |
| sp|Q4KLY6|DCR1B_RAT | 5' exonuclease Apollo OS=Rattus norvegicus GN=Dclre1b PE=1 SV=2 | 339 | 740 | 1.0E-27 |
| sp|B0V2S2|DCR1B_DANRE | 5' exonuclease Apollo OS=Danio rerio GN=dclre1b PE=2 SV=1 | 338 | 502 | 1.0E-23 |
| sp|Q5QJC2|DCR1C_CHICK | Protein artemis OS=Gallus gallus GN=DCLRE1C PE=2 SV=1 | 345 | 517 | 9.0E-16 |
| sp|Q5XIX3|DCR1C_RAT | Protein artemis OS=Rattus norvegicus GN=Dclre1c PE=1 SV=1 | 344 | 535 | 3.0E-14 |
| sp|Q8K4J0|DCR1C_MOUSE | Protein artemis OS=Mus musculus GN=Dclre1c PE=1 SV=2 | 344 | 517 | 2.0E-13 |
| sp|Q96SD1|DCR1C_HUMAN | Protein artemis OS=Homo sapiens GN=DCLRE1C PE=1 SV=2 | 344 | 517 | 4.0E-13 |
| sp|Q5R6Z9|DCR1C_PONAB | Protein artemis OS=Pongo abelii GN=DCLRE1C PE=2 SV=1 | 344 | 517 | 4.0E-13 |
| sp|Q5RGE5|DCR1C_DANRE | Protein artemis OS=Danio rerio GN=dclre1c PE=2 SV=1 | 360 | 499 | 5.0E-12 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|350 MSTPRKPANGARLSRKPSKPNASILSFFQKVRKEDESLFVGTQLDSATCDDDIYSDEDRRFNEFEQPAKKIRLDE EQNIVIGKQESTVQAGARVEKPRARVGVPFILDSDSEDEEDKAAVHGFEPPQFAAKPAAQLHPPKVEPDESLDEP PSIKHQDSTEARFCGLDGLGDLDVLDVDGFEGEELRERRFMLEQARLEAEEEGSQLANDDADGIPDDANTAEESC PICNGSLAGVSTDDATRHVNSCLDGNPIPLPAESKAPAEVDSAQVSKRFARAAIPRPAQANPFELDDAGVKATSA FSKIMSSKIEDSAWSTAAAAEHASRGRPAYERTCPFYKIIPGFNICVDAFRYGAVKGCEAYFLSHFHSDHYIGLT ANWKHGPIYCSKVTGSLVKKQLRTASQWVVELEFDEPFDVPGTDATVTMIPANHCPGSSLFLFQKPLGVGGMRRI LHCGDFRACPDHIKHPLLKPDVIDSITGKKRQQTIHMCYLDTTYLNPRYSFPRQDDVIKACADLCASISPNPESQ DDVWERSTAAGETQTMSKYFHSNKPEGSGKESVTGPKLGQRLLVVCGTYSIGKERICIAIAKALKTKIFAAPAKM KICKQLDDAELSALLTTKPVEAQVHMQSLMEIRAETLKDYLASYRPHFSRIVGFRPSGWTFRPATGKSFGANTPP SSVPTPQILHGKGWRTRFGYKDLVVQRGSTKEAMCFGVPYSEHSSFRELAMFIMGLRIEKVIPTVNVGSEQSRKR MKGWTDRWMAERRRGGLVVPMVEEETDEKGELELWDGKTAQGGGVWW |
| Coding | >Ophio5|350 ATGAGCACACCGAGGAAGCCCGCCAATGGAGCACGGCTCTCCAGGAAGCCGTCGAAGCCAAATGCCAGCATCCTC AGCTTCTTTCAAAAAGTGCGCAAGGAAGACGAGTCGCTCTTTGTAGGCACCCAGCTGGACTCTGCGACATGCGAT GACGACATTTACAGCGACGAGGATCGTCGCTTCAACGAGTTCGAACAACCAGCCAAGAAGATACGGCTAGACGAG GAGCAGAATATCGTAATTGGAAAACAGGAATCGACAGTCCAGGCCGGCGCCCGAGTGGAGAAGCCCAGGGCCCGC GTTGGAGTACCGTTTATCCTGGACTCTGATAGTGAAGATGAGGAAGACAAGGCCGCGGTGCATGGATTTGAACCG CCCCAATTTGCCGCAAAGCCTGCAGCGCAATTGCATCCGCCCAAGGTCGAACCTGACGAGAGCCTCGACGAACCC CCCTCCATCAAGCACCAAGATTCCACCGAGGCGCGATTTTGCGGTCTCGACGGTCTCGGAGACTTGGACGTCCTA GATGTCGACGGCTTTGAGGGCGAGGAGTTACGAGAAAGGAGGTTCATGTTGGAGCAGGCTCGACTCGAGGCCGAG GAGGAGGGATCGCAGCTGGCCAACGATGATGCTGATGGCATCCCAGATGACGCAAATACGGCAGAAGAGAGTTGC CCAATCTGCAACGGAAGCTTGGCCGGTGTCTCCACAGACGATGCGACCCGTCACGTCAATTCATGCCTCGACGGC AACCCTATTCCGCTACCCGCCGAGAGCAAGGCTCCGGCCGAGGTCGATTCAGCTCAGGTCAGCAAGAGGTTCGCC AGGGCGGCCATCCCCCGGCCGGCACAAGCGAATCCGTTCGAACTCGACGACGCCGGCGTAAAAGCTACCTCGGCC TTCTCCAAGATCATGTCCAGCAAGATCGAGGACTCGGCGTGGAGTACGGCGGCAGCGGCGGAGCATGCGTCACGC GGTAGGCCCGCCTACGAGCGGACATGCCCTTTTTATAAAATCATTCCCGGCTTCAACATATGTGTCGACGCCTTT CGCTACGGTGCCGTGAAGGGTTGTGAGGCCTACTTTCTCAGCCACTTTCACAGCGATCACTACATCGGGCTGACG GCCAACTGGAAGCACGGCCCCATTTACTGCAGCAAGGTCACCGGTAGTCTGGTCAAGAAACAGCTGCGTACCGCG TCCCAATGGGTCGTCGAGCTGGAATTTGACGAGCCGTTTGACGTCCCCGGAACGGATGCGACAGTGACCATGATA CCGGCCAACCACTGTCCGGGAAGCTCCTTGTTCCTCTTCCAGAAGCCTCTCGGGGTCGGCGGGATGCGGCGAATC CTGCACTGCGGCGATTTCCGAGCTTGCCCTGACCATATCAAACACCCACTCCTCAAGCCGGACGTCATCGACTCT ATAACTGGCAAAAAGAGGCAACAAACCATACACATGTGCTACCTCGACACAACGTATCTGAATCCGCGGTATTCT TTTCCCAGGCAAGACGACGTCATCAAGGCTTGTGCGGATTTGTGCGCCTCCATCTCGCCGAATCCCGAATCTCAA GACGACGTATGGGAGAGATCGACTGCAGCTGGCGAGACGCAAACGATGAGCAAGTATTTCCACAGCAACAAGCCG GAAGGGTCCGGCAAGGAATCCGTCACCGGACCGAAGCTGGGGCAGCGGCTACTTGTCGTCTGCGGGACGTATTCG ATCGGCAAGGAGCGGATTTGTATCGCCATCGCCAAGGCGCTCAAGACCAAGATATTCGCGGCTCCCGCCAAGATG AAGATCTGCAAGCAGTTGGACGACGCCGAGCTCTCGGCGCTCCTGACGACGAAGCCTGTCGAGGCCCAGGTGCAC ATGCAGTCGCTCATGGAGATTCGCGCCGAAACGCTCAAAGATTATCTCGCAAGCTACAGGCCGCACTTTAGCCGC ATCGTCGGATTCCGGCCCAGCGGCTGGACCTTTCGGCCCGCTACCGGCAAGTCGTTTGGGGCCAACACGCCTCCG AGCAGCGTTCCCACCCCGCAGATCCTTCACGGCAAGGGCTGGCGGACCAGATTTGGATACAAGGATCTTGTAGTC CAGCGGGGTAGCACCAAAGAAGCCATGTGCTTTGGAGTTCCGTATTCCGAGCATAGCAGTTTCCGAGAGCTGGCC ATGTTCATCATGGGCTTGAGGATCGAGAAGGTCATCCCGACCGTCAACGTGGGGAGCGAGCAGTCGCGGAAGAGG ATGAAGGGTTGGACCGATCGGTGGATGGCCGAGAGGAGACGCGGCGGTCTTGTCGTGCCCATGGTGGAGGAGGAG ACGGACGAGAAAGGTGAGTTGGAATTATGGGATGGGAAGACGGCACAAGGCGGCGGCGTCTGGTGG |
| Transcript | >Ophio5|350 ATGAGCACACCGAGGAAGCCCGCCAATGGAGCACGGCTCTCCAGGAAGCCGTCGAAGCCAAATGCCAGCATCCTC AGCTTCTTTCAAAAAGTGCGCAAGGAAGACGAGTCGCTCTTTGTAGGCACCCAGCTGGACTCTGCGACATGCGAT GACGACATTTACAGCGACGAGGATCGTCGCTTCAACGAGTTCGAACAACCAGCCAAGAAGATACGGCTAGACGAG GAGCAGAATATCGTAATTGGAAAACAGGAATCGACAGTCCAGGCCGGCGCCCGAGTGGAGAAGCCCAGGGCCCGC GTTGGAGTACCGTTTATCCTGGACTCTGATAGTGAAGATGAGGAAGACAAGGCCGCGGTGCATGGATTTGAACCG CCCCAATTTGCCGCAAAGCCTGCAGCGCAATTGCATCCGCCCAAGGTCGAACCTGACGAGAGCCTCGACGAACCC CCCTCCATCAAGCACCAAGATTCCACCGAGGCGCGATTTTGCGGTCTCGACGGTCTCGGAGACTTGGACGTCCTA GATGTCGACGGCTTTGAGGGCGAGGAGTTACGAGAAAGGAGGTTCATGTTGGAGCAGGCTCGACTCGAGGCCGAG GAGGAGGGATCGCAGCTGGCCAACGATGATGCTGATGGCATCCCAGATGACGCAAATACGGCAGAAGAGAGTTGC CCAATCTGCAACGGAAGCTTGGCCGGTGTCTCCACAGACGATGCGACCCGTCACGTCAATTCATGCCTCGACGGC AACCCTATTCCGCTACCCGCCGAGAGCAAGGCTCCGGCCGAGGTCGATTCAGCTCAGGTCAGCAAGAGGTTCGCC AGGGCGGCCATCCCCCGGCCGGCACAAGCGAATCCGTTCGAACTCGACGACGCCGGCGTAAAAGCTACCTCGGCC TTCTCCAAGATCATGTCCAGCAAGATCGAGGACTCGGCGTGGAGTACGGCGGCAGCGGCGGAGCATGCGTCACGC GGTAGGCCCGCCTACGAGCGGACATGCCCTTTTTATAAAATCATTCCCGGCTTCAACATATGTGTCGACGCCTTT CGCTACGGTGCCGTGAAGGGTTGTGAGGCCTACTTTCTCAGCCACTTTCACAGCGATCACTACATCGGGCTGACG GCCAACTGGAAGCACGGCCCCATTTACTGCAGCAAGGTCACCGGTAGTCTGGTCAAGAAACAGCTGCGTACCGCG TCCCAATGGGTCGTCGAGCTGGAATTTGACGAGCCGTTTGACGTCCCCGGAACGGATGCGACAGTGACCATGATA CCGGCCAACCACTGTCCGGGAAGCTCCTTGTTCCTCTTCCAGAAGCCTCTCGGGGTCGGCGGGATGCGGCGAATC CTGCACTGCGGCGATTTCCGAGCTTGCCCTGACCATATCAAACACCCACTCCTCAAGCCGGACGTCATCGACTCT ATAACTGGCAAAAAGAGGCAACAAACCATACACATGTGCTACCTCGACACAACGTATCTGAATCCGCGGTATTCT TTTCCCAGGCAAGACGACGTCATCAAGGCTTGTGCGGATTTGTGCGCCTCCATCTCGCCGAATCCCGAATCTCAA GACGACGTATGGGAGAGATCGACTGCAGCTGGCGAGACGCAAACGATGAGCAAGTATTTCCACAGCAACAAGCCG GAAGGGTCCGGCAAGGAATCCGTCACCGGACCGAAGCTGGGGCAGCGGCTACTTGTCGTCTGCGGGACGTATTCG ATCGGCAAGGAGCGGATTTGTATCGCCATCGCCAAGGCGCTCAAGACCAAGATATTCGCGGCTCCCGCCAAGATG AAGATCTGCAAGCAGTTGGACGACGCCGAGCTCTCGGCGCTCCTGACGACGAAGCCTGTCGAGGCCCAGGTGCAC ATGCAGTCGCTCATGGAGATTCGCGCCGAAACGCTCAAAGATTATCTCGCAAGCTACAGGCCGCACTTTAGCCGC ATCGTCGGATTCCGGCCCAGCGGCTGGACCTTTCGGCCCGCTACCGGCAAGTCGTTTGGGGCCAACACGCCTCCG AGCAGCGTTCCCACCCCGCAGATCCTTCACGGCAAGGGCTGGCGGACCAGATTTGGATACAAGGATCTTGTAGTC CAGCGGGGTAGCACCAAAGAAGCCATGTGCTTTGGAGTTCCGTATTCCGAGCATAGCAGTTTCCGAGAGCTGGCC ATGTTCATCATGGGCTTGAGGATCGAGAAGGTCATCCCGACCGTCAACGTGGGGAGCGAGCAGTCGCGGAAGAGG ATGAAGGGTTGGACCGATCGGTGGATGGCCGAGAGGAGACGCGGCGGTCTTGTCGTGCCCATGGTGGAGGAGGAG ACGGACGAGAAAGGTGAGTTGGAATTATGGGATGGGAAGACGGCACAAGGCGGCGGCGTCTGGTGGTAA |
| Gene | >Ophio5|350 ATGAGCACACCGAGGAAGCCCGCCAATGGAGCACGGCTCTCCAGGAAGCCGTCGAAGCCAAATGCCAGCATCCTC AGCTTCTTTCAAAAAGTGCGCAAGGAAGACGAGTCGCTCTTTGTAGGCACCCAGCTGGACTCTGCGACATGCGAT GACGACATTTACAGCGACGAGGATCGTCGCTTCAACGAGTTCGAACAACCAGCCAAGAAGATACGGCTAGACGAG GAGCAGAATATCGTAATTGGAAAACAGGAATCGACAGTCCAGGCCGGCGCCCGAGTGGAGAAGCCCAGGGCCCGC GTTGGAGTACCGTTTATCCTGGACTCTGATAGTGAAGATGAGGAAGACAAGGCCGCGGTGCATGGATTTGAACCG CCCCAATTTGCCGCAAAGCCTGCAGCGCAATTGCATCCGCCCAAGGTCGAACCTGACGAGAGCCTCGACGAACCC CCCTCCATCAAGCACCAAGATTCCACCGAGGCGCGATTTTGCGGTCTCGACGGTCTCGGAGACTTGGACGTCCTA GATGTCGACGGCTTTGAGGGCGAGGAGTTACGAGAAAGGAGGTTCATGTTGGAGCAGGCTCGACTCGAGGCCGAG GAGGAGGGATCGCAGCTGGCCAACGATGATGCTGATGGCATCCCAGATGACGCAAATACGGCAGAAGAGAGTTGC CCAATCTGCAACGGAAGCTTGGCCGGTGTCTCCACAGACGATGCGACCCGTCACGTCAATTCATGCCTCGACGGC AACCCTATTCCGCTACCCGCCGAGAGCAAGGCTCCGGCCGAGGTCGATTCAGCTCAGGTCAGCAAGAGGTTCGCC AGGGCGGCCATCCCCCGGCCGGCACAAGCGAATCCGTTCGAACTCGACGACGCCGGCGTAAAAGCTACCTCGGCC TTCTCCAAGATCATGTCCAGCAAGATCGAGGACTCGGCGTGGAGTACGGCGGCAGCGGCGGAGCATGCGTCACGC GGTAGGCCCGCCTACGAGCGGACATGCCCTTTTTATAAAATCATTCCCGGCTTCAACATATGTGTCGACGCCTTT CGCTACGGTGCCGTGAAGGGTTGTGAGGCCTACTTTCTCAGCCACTTTCACAGCGATCACTACATCGGGCTGACG GCCAACTGGAAGCACGGCCCCATTTACTGCAGCAAGGTCACCGGTAGTCTGGTCAAGAAACAGCTGCGTACCGCG TCCCAATGGGTCGTCGAGCTGGAATTTGACGAGCCGTTTGACGTCCCCGGAACGGATGCGACAGTGACCATGATA CCGGCCAACCACTGTCCGGGAAGCTCCTTGTTCCTCTTCCAGAAGCCTCTCGGGGTCGGCGGGATGCGGCGAATC CTGCACTGCGGCGATTTCCGAGCTTGCCCTGACCATATCAAACACCCACTCCTCAAGCCGGACGTCATCGACTCT ATAACTGGCAAAAAGAGGCAACAAACCATACACATGTGCTACCTCGACACAACGTATCTGAATCCGCGGTATTCT TTTCCCAGGCAAGACGACGTCATCAAGGCTTGTGCGGATTTGTGCGCCTCCATCTCGCCGAATCCCGAATCTCAA GACGACGTATGGGAGAGATCGACTGCAGCTGGCGAGACGCAAACGATGAGCAAGTATTTCCACAGCAACAAGCCG GAAGGGTCCGGCAAGGAATCCGTCACCGGACCGAAGCTGGGGCAGCGGCTACTTGTCGTCTGCGGGACGTATTCG ATCGGCAAGGAGCGGATTTGTATCGCCATCGCCAAGGCGCTCAAGACCAAGATATTCGCGGCTCCCGCCAAGATG AAGATCTGCAAGCAGTTGGACGACGCCGAGCTCTCGGCGCTCCTGACGACGAAGCCTGTCGAGGCCCAGGTGCAC ATGCAGTCGCTCATGGAGATTCGCGCCGAAACGCTCAAAGATTATCTCGCAAGCTACAGGCCGCACTTTAGCCGC ATCGTCGGATTCCGGCCCAGCGGCTGGACCTTTCGGCCCGCTACCGGCAAGTCGTTTGGGGCCAACACGCCTCCG AGCAGCGTTCCCACCCCGCAGATCCTTCACGGCAAGGGCTGGCGGACCAGATTTGGATACAAGGATCTTGTAGTC CAGCGGGGTAGCACCAAAGAAGCCATGTGCTTTGGAGTTCCGTATTCCGAGCATAGCAGTTTCCGAGAGCTGGCC ATGTTCATCATGGGCTTGAGGATCGAGAAGGTCATCCCGACCGTCAACGTGGGGAGCGAGCAGTCGCGGAAGAGG ATGAAGGGTTGGACCGATCGGTGGATGGCCGAGAGGAGACGCGGCGGTCTTGTCGTGCCCATGGTGGAGGAGGAG ACGGACGAGAAAGGTGAGTTGGAATTATGGGATGGGAAGACGGCACAAGGCGGCGGCGTCTGGTGGTAA |