Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|350
Gene name
Locationscaffold_108:26771..29165
Strand+
Gene length (bp)2394
Transcript length (bp)2394
Coding sequence length (bp)2391
Protein length (aa) 797

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07522 DRMBL DNA repair metallo-beta-lactamase 1.8E-35 610 743
PF12706 Lactamase_B_2 Beta-lactamase superfamily domain 4.1E-08 357 473

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q10264|PSO2_SCHPO DNA cross-link repair protein pso2/snm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pso2 PE=3 SV=3 225 768 2.0E-122
sp|Q9JIC3|DCR1A_MOUSE DNA cross-link repair 1A protein OS=Mus musculus GN=Dclre1a PE=1 SV=2 324 761 4.0E-73
sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein OS=Gallus gallus GN=DCLRE1A PE=1 SV=1 321 761 7.0E-73
sp|Q38961|SNM1_ARATH DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1 PE=2 SV=1 332 759 2.0E-72
sp|Q6PJP8|DCR1A_HUMAN DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=3 331 761 6.0E-71
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Swissprot ID Swissprot Description Start End E-value
sp|Q10264|PSO2_SCHPO DNA cross-link repair protein pso2/snm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pso2 PE=3 SV=3 225 768 2.0E-122
sp|Q9JIC3|DCR1A_MOUSE DNA cross-link repair 1A protein OS=Mus musculus GN=Dclre1a PE=1 SV=2 324 761 4.0E-73
sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein OS=Gallus gallus GN=DCLRE1A PE=1 SV=1 321 761 7.0E-73
sp|Q38961|SNM1_ARATH DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1 PE=2 SV=1 332 759 2.0E-72
sp|Q6PJP8|DCR1A_HUMAN DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=3 331 761 6.0E-71
sp|P30620|PSO2_YEAST DNA cross-link repair protein PSO2/SNM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSO2 PE=1 SV=1 225 763 2.0E-54
sp|Q86KS1|DCR1_DICDI DNA cross-link repair 1 protein OS=Dictyostelium discoideum GN=dclre1 PE=3 SV=1 322 744 6.0E-45
sp|Q5QJC3|DCR1B_CHICK 5' exonuclease Apollo OS=Gallus gallus GN=DCLRE1B PE=2 SV=1 339 741 9.0E-32
sp|Q9H816|DCR1B_HUMAN 5' exonuclease Apollo OS=Homo sapiens GN=DCLRE1B PE=1 SV=1 339 741 3.0E-28
sp|D2H8V8|DCR1B_AILME 5' exonuclease Apollo OS=Ailuropoda melanoleuca GN=DCLRE1B PE=3 SV=1 339 632 5.0E-28
sp|Q8C7W7|DCR1B_MOUSE 5' exonuclease Apollo OS=Mus musculus GN=Dclre1b PE=1 SV=2 339 741 6.0E-28
sp|Q4KLY6|DCR1B_RAT 5' exonuclease Apollo OS=Rattus norvegicus GN=Dclre1b PE=1 SV=2 339 740 1.0E-27
sp|B0V2S2|DCR1B_DANRE 5' exonuclease Apollo OS=Danio rerio GN=dclre1b PE=2 SV=1 338 502 1.0E-23
sp|Q5QJC2|DCR1C_CHICK Protein artemis OS=Gallus gallus GN=DCLRE1C PE=2 SV=1 345 517 9.0E-16
sp|Q5XIX3|DCR1C_RAT Protein artemis OS=Rattus norvegicus GN=Dclre1c PE=1 SV=1 344 535 3.0E-14
sp|Q8K4J0|DCR1C_MOUSE Protein artemis OS=Mus musculus GN=Dclre1c PE=1 SV=2 344 517 2.0E-13
sp|Q96SD1|DCR1C_HUMAN Protein artemis OS=Homo sapiens GN=DCLRE1C PE=1 SV=2 344 517 4.0E-13
sp|Q5R6Z9|DCR1C_PONAB Protein artemis OS=Pongo abelii GN=DCLRE1C PE=2 SV=1 344 517 4.0E-13
sp|Q5RGE5|DCR1C_DANRE Protein artemis OS=Danio rerio GN=dclre1c PE=2 SV=1 360 499 5.0E-12
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 34 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|350
MSTPRKPANGARLSRKPSKPNASILSFFQKVRKEDESLFVGTQLDSATCDDDIYSDEDRRFNEFEQPAKKIRLDE
EQNIVIGKQESTVQAGARVEKPRARVGVPFILDSDSEDEEDKAAVHGFEPPQFAAKPAAQLHPPKVEPDESLDEP
PSIKHQDSTEARFCGLDGLGDLDVLDVDGFEGEELRERRFMLEQARLEAEEEGSQLANDDADGIPDDANTAEESC
PICNGSLAGVSTDDATRHVNSCLDGNPIPLPAESKAPAEVDSAQVSKRFARAAIPRPAQANPFELDDAGVKATSA
FSKIMSSKIEDSAWSTAAAAEHASRGRPAYERTCPFYKIIPGFNICVDAFRYGAVKGCEAYFLSHFHSDHYIGLT
ANWKHGPIYCSKVTGSLVKKQLRTASQWVVELEFDEPFDVPGTDATVTMIPANHCPGSSLFLFQKPLGVGGMRRI
LHCGDFRACPDHIKHPLLKPDVIDSITGKKRQQTIHMCYLDTTYLNPRYSFPRQDDVIKACADLCASISPNPESQ
DDVWERSTAAGETQTMSKYFHSNKPEGSGKESVTGPKLGQRLLVVCGTYSIGKERICIAIAKALKTKIFAAPAKM
KICKQLDDAELSALLTTKPVEAQVHMQSLMEIRAETLKDYLASYRPHFSRIVGFRPSGWTFRPATGKSFGANTPP
SSVPTPQILHGKGWRTRFGYKDLVVQRGSTKEAMCFGVPYSEHSSFRELAMFIMGLRIEKVIPTVNVGSEQSRKR
MKGWTDRWMAERRRGGLVVPMVEEETDEKGELELWDGKTAQGGGVWW
Coding >Ophio5|350
ATGAGCACACCGAGGAAGCCCGCCAATGGAGCACGGCTCTCCAGGAAGCCGTCGAAGCCAAATGCCAGCATCCTC
AGCTTCTTTCAAAAAGTGCGCAAGGAAGACGAGTCGCTCTTTGTAGGCACCCAGCTGGACTCTGCGACATGCGAT
GACGACATTTACAGCGACGAGGATCGTCGCTTCAACGAGTTCGAACAACCAGCCAAGAAGATACGGCTAGACGAG
GAGCAGAATATCGTAATTGGAAAACAGGAATCGACAGTCCAGGCCGGCGCCCGAGTGGAGAAGCCCAGGGCCCGC
GTTGGAGTACCGTTTATCCTGGACTCTGATAGTGAAGATGAGGAAGACAAGGCCGCGGTGCATGGATTTGAACCG
CCCCAATTTGCCGCAAAGCCTGCAGCGCAATTGCATCCGCCCAAGGTCGAACCTGACGAGAGCCTCGACGAACCC
CCCTCCATCAAGCACCAAGATTCCACCGAGGCGCGATTTTGCGGTCTCGACGGTCTCGGAGACTTGGACGTCCTA
GATGTCGACGGCTTTGAGGGCGAGGAGTTACGAGAAAGGAGGTTCATGTTGGAGCAGGCTCGACTCGAGGCCGAG
GAGGAGGGATCGCAGCTGGCCAACGATGATGCTGATGGCATCCCAGATGACGCAAATACGGCAGAAGAGAGTTGC
CCAATCTGCAACGGAAGCTTGGCCGGTGTCTCCACAGACGATGCGACCCGTCACGTCAATTCATGCCTCGACGGC
AACCCTATTCCGCTACCCGCCGAGAGCAAGGCTCCGGCCGAGGTCGATTCAGCTCAGGTCAGCAAGAGGTTCGCC
AGGGCGGCCATCCCCCGGCCGGCACAAGCGAATCCGTTCGAACTCGACGACGCCGGCGTAAAAGCTACCTCGGCC
TTCTCCAAGATCATGTCCAGCAAGATCGAGGACTCGGCGTGGAGTACGGCGGCAGCGGCGGAGCATGCGTCACGC
GGTAGGCCCGCCTACGAGCGGACATGCCCTTTTTATAAAATCATTCCCGGCTTCAACATATGTGTCGACGCCTTT
CGCTACGGTGCCGTGAAGGGTTGTGAGGCCTACTTTCTCAGCCACTTTCACAGCGATCACTACATCGGGCTGACG
GCCAACTGGAAGCACGGCCCCATTTACTGCAGCAAGGTCACCGGTAGTCTGGTCAAGAAACAGCTGCGTACCGCG
TCCCAATGGGTCGTCGAGCTGGAATTTGACGAGCCGTTTGACGTCCCCGGAACGGATGCGACAGTGACCATGATA
CCGGCCAACCACTGTCCGGGAAGCTCCTTGTTCCTCTTCCAGAAGCCTCTCGGGGTCGGCGGGATGCGGCGAATC
CTGCACTGCGGCGATTTCCGAGCTTGCCCTGACCATATCAAACACCCACTCCTCAAGCCGGACGTCATCGACTCT
ATAACTGGCAAAAAGAGGCAACAAACCATACACATGTGCTACCTCGACACAACGTATCTGAATCCGCGGTATTCT
TTTCCCAGGCAAGACGACGTCATCAAGGCTTGTGCGGATTTGTGCGCCTCCATCTCGCCGAATCCCGAATCTCAA
GACGACGTATGGGAGAGATCGACTGCAGCTGGCGAGACGCAAACGATGAGCAAGTATTTCCACAGCAACAAGCCG
GAAGGGTCCGGCAAGGAATCCGTCACCGGACCGAAGCTGGGGCAGCGGCTACTTGTCGTCTGCGGGACGTATTCG
ATCGGCAAGGAGCGGATTTGTATCGCCATCGCCAAGGCGCTCAAGACCAAGATATTCGCGGCTCCCGCCAAGATG
AAGATCTGCAAGCAGTTGGACGACGCCGAGCTCTCGGCGCTCCTGACGACGAAGCCTGTCGAGGCCCAGGTGCAC
ATGCAGTCGCTCATGGAGATTCGCGCCGAAACGCTCAAAGATTATCTCGCAAGCTACAGGCCGCACTTTAGCCGC
ATCGTCGGATTCCGGCCCAGCGGCTGGACCTTTCGGCCCGCTACCGGCAAGTCGTTTGGGGCCAACACGCCTCCG
AGCAGCGTTCCCACCCCGCAGATCCTTCACGGCAAGGGCTGGCGGACCAGATTTGGATACAAGGATCTTGTAGTC
CAGCGGGGTAGCACCAAAGAAGCCATGTGCTTTGGAGTTCCGTATTCCGAGCATAGCAGTTTCCGAGAGCTGGCC
ATGTTCATCATGGGCTTGAGGATCGAGAAGGTCATCCCGACCGTCAACGTGGGGAGCGAGCAGTCGCGGAAGAGG
ATGAAGGGTTGGACCGATCGGTGGATGGCCGAGAGGAGACGCGGCGGTCTTGTCGTGCCCATGGTGGAGGAGGAG
ACGGACGAGAAAGGTGAGTTGGAATTATGGGATGGGAAGACGGCACAAGGCGGCGGCGTCTGGTGG
Transcript >Ophio5|350
ATGAGCACACCGAGGAAGCCCGCCAATGGAGCACGGCTCTCCAGGAAGCCGTCGAAGCCAAATGCCAGCATCCTC
AGCTTCTTTCAAAAAGTGCGCAAGGAAGACGAGTCGCTCTTTGTAGGCACCCAGCTGGACTCTGCGACATGCGAT
GACGACATTTACAGCGACGAGGATCGTCGCTTCAACGAGTTCGAACAACCAGCCAAGAAGATACGGCTAGACGAG
GAGCAGAATATCGTAATTGGAAAACAGGAATCGACAGTCCAGGCCGGCGCCCGAGTGGAGAAGCCCAGGGCCCGC
GTTGGAGTACCGTTTATCCTGGACTCTGATAGTGAAGATGAGGAAGACAAGGCCGCGGTGCATGGATTTGAACCG
CCCCAATTTGCCGCAAAGCCTGCAGCGCAATTGCATCCGCCCAAGGTCGAACCTGACGAGAGCCTCGACGAACCC
CCCTCCATCAAGCACCAAGATTCCACCGAGGCGCGATTTTGCGGTCTCGACGGTCTCGGAGACTTGGACGTCCTA
GATGTCGACGGCTTTGAGGGCGAGGAGTTACGAGAAAGGAGGTTCATGTTGGAGCAGGCTCGACTCGAGGCCGAG
GAGGAGGGATCGCAGCTGGCCAACGATGATGCTGATGGCATCCCAGATGACGCAAATACGGCAGAAGAGAGTTGC
CCAATCTGCAACGGAAGCTTGGCCGGTGTCTCCACAGACGATGCGACCCGTCACGTCAATTCATGCCTCGACGGC
AACCCTATTCCGCTACCCGCCGAGAGCAAGGCTCCGGCCGAGGTCGATTCAGCTCAGGTCAGCAAGAGGTTCGCC
AGGGCGGCCATCCCCCGGCCGGCACAAGCGAATCCGTTCGAACTCGACGACGCCGGCGTAAAAGCTACCTCGGCC
TTCTCCAAGATCATGTCCAGCAAGATCGAGGACTCGGCGTGGAGTACGGCGGCAGCGGCGGAGCATGCGTCACGC
GGTAGGCCCGCCTACGAGCGGACATGCCCTTTTTATAAAATCATTCCCGGCTTCAACATATGTGTCGACGCCTTT
CGCTACGGTGCCGTGAAGGGTTGTGAGGCCTACTTTCTCAGCCACTTTCACAGCGATCACTACATCGGGCTGACG
GCCAACTGGAAGCACGGCCCCATTTACTGCAGCAAGGTCACCGGTAGTCTGGTCAAGAAACAGCTGCGTACCGCG
TCCCAATGGGTCGTCGAGCTGGAATTTGACGAGCCGTTTGACGTCCCCGGAACGGATGCGACAGTGACCATGATA
CCGGCCAACCACTGTCCGGGAAGCTCCTTGTTCCTCTTCCAGAAGCCTCTCGGGGTCGGCGGGATGCGGCGAATC
CTGCACTGCGGCGATTTCCGAGCTTGCCCTGACCATATCAAACACCCACTCCTCAAGCCGGACGTCATCGACTCT
ATAACTGGCAAAAAGAGGCAACAAACCATACACATGTGCTACCTCGACACAACGTATCTGAATCCGCGGTATTCT
TTTCCCAGGCAAGACGACGTCATCAAGGCTTGTGCGGATTTGTGCGCCTCCATCTCGCCGAATCCCGAATCTCAA
GACGACGTATGGGAGAGATCGACTGCAGCTGGCGAGACGCAAACGATGAGCAAGTATTTCCACAGCAACAAGCCG
GAAGGGTCCGGCAAGGAATCCGTCACCGGACCGAAGCTGGGGCAGCGGCTACTTGTCGTCTGCGGGACGTATTCG
ATCGGCAAGGAGCGGATTTGTATCGCCATCGCCAAGGCGCTCAAGACCAAGATATTCGCGGCTCCCGCCAAGATG
AAGATCTGCAAGCAGTTGGACGACGCCGAGCTCTCGGCGCTCCTGACGACGAAGCCTGTCGAGGCCCAGGTGCAC
ATGCAGTCGCTCATGGAGATTCGCGCCGAAACGCTCAAAGATTATCTCGCAAGCTACAGGCCGCACTTTAGCCGC
ATCGTCGGATTCCGGCCCAGCGGCTGGACCTTTCGGCCCGCTACCGGCAAGTCGTTTGGGGCCAACACGCCTCCG
AGCAGCGTTCCCACCCCGCAGATCCTTCACGGCAAGGGCTGGCGGACCAGATTTGGATACAAGGATCTTGTAGTC
CAGCGGGGTAGCACCAAAGAAGCCATGTGCTTTGGAGTTCCGTATTCCGAGCATAGCAGTTTCCGAGAGCTGGCC
ATGTTCATCATGGGCTTGAGGATCGAGAAGGTCATCCCGACCGTCAACGTGGGGAGCGAGCAGTCGCGGAAGAGG
ATGAAGGGTTGGACCGATCGGTGGATGGCCGAGAGGAGACGCGGCGGTCTTGTCGTGCCCATGGTGGAGGAGGAG
ACGGACGAGAAAGGTGAGTTGGAATTATGGGATGGGAAGACGGCACAAGGCGGCGGCGTCTGGTGGTAA
Gene >Ophio5|350
ATGAGCACACCGAGGAAGCCCGCCAATGGAGCACGGCTCTCCAGGAAGCCGTCGAAGCCAAATGCCAGCATCCTC
AGCTTCTTTCAAAAAGTGCGCAAGGAAGACGAGTCGCTCTTTGTAGGCACCCAGCTGGACTCTGCGACATGCGAT
GACGACATTTACAGCGACGAGGATCGTCGCTTCAACGAGTTCGAACAACCAGCCAAGAAGATACGGCTAGACGAG
GAGCAGAATATCGTAATTGGAAAACAGGAATCGACAGTCCAGGCCGGCGCCCGAGTGGAGAAGCCCAGGGCCCGC
GTTGGAGTACCGTTTATCCTGGACTCTGATAGTGAAGATGAGGAAGACAAGGCCGCGGTGCATGGATTTGAACCG
CCCCAATTTGCCGCAAAGCCTGCAGCGCAATTGCATCCGCCCAAGGTCGAACCTGACGAGAGCCTCGACGAACCC
CCCTCCATCAAGCACCAAGATTCCACCGAGGCGCGATTTTGCGGTCTCGACGGTCTCGGAGACTTGGACGTCCTA
GATGTCGACGGCTTTGAGGGCGAGGAGTTACGAGAAAGGAGGTTCATGTTGGAGCAGGCTCGACTCGAGGCCGAG
GAGGAGGGATCGCAGCTGGCCAACGATGATGCTGATGGCATCCCAGATGACGCAAATACGGCAGAAGAGAGTTGC
CCAATCTGCAACGGAAGCTTGGCCGGTGTCTCCACAGACGATGCGACCCGTCACGTCAATTCATGCCTCGACGGC
AACCCTATTCCGCTACCCGCCGAGAGCAAGGCTCCGGCCGAGGTCGATTCAGCTCAGGTCAGCAAGAGGTTCGCC
AGGGCGGCCATCCCCCGGCCGGCACAAGCGAATCCGTTCGAACTCGACGACGCCGGCGTAAAAGCTACCTCGGCC
TTCTCCAAGATCATGTCCAGCAAGATCGAGGACTCGGCGTGGAGTACGGCGGCAGCGGCGGAGCATGCGTCACGC
GGTAGGCCCGCCTACGAGCGGACATGCCCTTTTTATAAAATCATTCCCGGCTTCAACATATGTGTCGACGCCTTT
CGCTACGGTGCCGTGAAGGGTTGTGAGGCCTACTTTCTCAGCCACTTTCACAGCGATCACTACATCGGGCTGACG
GCCAACTGGAAGCACGGCCCCATTTACTGCAGCAAGGTCACCGGTAGTCTGGTCAAGAAACAGCTGCGTACCGCG
TCCCAATGGGTCGTCGAGCTGGAATTTGACGAGCCGTTTGACGTCCCCGGAACGGATGCGACAGTGACCATGATA
CCGGCCAACCACTGTCCGGGAAGCTCCTTGTTCCTCTTCCAGAAGCCTCTCGGGGTCGGCGGGATGCGGCGAATC
CTGCACTGCGGCGATTTCCGAGCTTGCCCTGACCATATCAAACACCCACTCCTCAAGCCGGACGTCATCGACTCT
ATAACTGGCAAAAAGAGGCAACAAACCATACACATGTGCTACCTCGACACAACGTATCTGAATCCGCGGTATTCT
TTTCCCAGGCAAGACGACGTCATCAAGGCTTGTGCGGATTTGTGCGCCTCCATCTCGCCGAATCCCGAATCTCAA
GACGACGTATGGGAGAGATCGACTGCAGCTGGCGAGACGCAAACGATGAGCAAGTATTTCCACAGCAACAAGCCG
GAAGGGTCCGGCAAGGAATCCGTCACCGGACCGAAGCTGGGGCAGCGGCTACTTGTCGTCTGCGGGACGTATTCG
ATCGGCAAGGAGCGGATTTGTATCGCCATCGCCAAGGCGCTCAAGACCAAGATATTCGCGGCTCCCGCCAAGATG
AAGATCTGCAAGCAGTTGGACGACGCCGAGCTCTCGGCGCTCCTGACGACGAAGCCTGTCGAGGCCCAGGTGCAC
ATGCAGTCGCTCATGGAGATTCGCGCCGAAACGCTCAAAGATTATCTCGCAAGCTACAGGCCGCACTTTAGCCGC
ATCGTCGGATTCCGGCCCAGCGGCTGGACCTTTCGGCCCGCTACCGGCAAGTCGTTTGGGGCCAACACGCCTCCG
AGCAGCGTTCCCACCCCGCAGATCCTTCACGGCAAGGGCTGGCGGACCAGATTTGGATACAAGGATCTTGTAGTC
CAGCGGGGTAGCACCAAAGAAGCCATGTGCTTTGGAGTTCCGTATTCCGAGCATAGCAGTTTCCGAGAGCTGGCC
ATGTTCATCATGGGCTTGAGGATCGAGAAGGTCATCCCGACCGTCAACGTGGGGAGCGAGCAGTCGCGGAAGAGG
ATGAAGGGTTGGACCGATCGGTGGATGGCCGAGAGGAGACGCGGCGGTCTTGTCGTGCCCATGGTGGAGGAGGAG
ACGGACGAGAAAGGTGAGTTGGAATTATGGGATGGGAAGACGGCACAAGGCGGCGGCGTCTGGTGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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