Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3499
Gene name
Locationscaffold_278:10093..11146
Strand-
Gene length (bp)1053
Transcript length (bp)1053
Coding sequence length (bp)1050
Protein length (aa) 350

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01753 zf-MYND MYND finger 2.1E-05 23 61

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 39 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 3.95 0.79 7.10
CcL In ants, during behavior modification 13.87 4.81 22.93
CcD In ants, recently dead 1.34 0.00 2.72

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000770 yes
SC16a CcD 0.021712 yes
CcL CcD 0.000286 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3499
MHVIPRHFYSSIDQLRSLKPRRCEWCGIQYGDLRRCGACQVVYYCQPACQLADSVHHAEPCNTIFNARCAYTREC
RKVPPDLAAIEYSLMAVHRARVGGYGKPGGSAEVVQTALKDLQDMLRRVSFNEVRSLGLCCMLPGLLIRLGRDDE
ALQYIKFNNCLYRRLYDPVDFQNMVPAELDDDGNLVESADDDPSECTHNCGLHDEIDLFHQRAESLLQGGRLLLS
HAPFILLLKMRALLVLKTLQNAQLAFFGILPQEIIDLIKARVLDSVTCNRQDMLVATPETMQQLDGELERDVQVT
CQYIQTCSSKFWDIFTTDTDAKFLSDPSSYELGQPWEEYSRLVVGSIYAA
Coding >Ophio5|3499
ATGCACGTCATCCCACGACATTTTTATTCAAGTATCGACCAGCTCAGGAGTCTCAAACCGCGACGCTGTGAGTGG
TGCGGCATCCAATACGGCGACCTAAGGCGCTGCGGAGCCTGTCAGGTTGTCTACTACTGCCAGCCTGCTTGCCAG
CTTGCCGATTCAGTACATCACGCGGAGCCGTGCAATACCATCTTCAACGCCCGCTGCGCCTACACGAGAGAGTGT
CGAAAGGTGCCCCCTGACCTTGCCGCTATAGAGTACAGCCTCATGGCTGTCCACCGTGCCCGAGTCGGAGGCTAC
GGCAAGCCTGGCGGATCCGCCGAGGTGGTTCAGACGGCGTTGAAGGACCTGCAGGATATGTTACGCAGGGTGAGC
TTCAATGAAGTTCGTTCACTCGGCTTGTGCTGCATGCTGCCTGGTCTATTGATTCGTCTCGGCAGGGACGATGAA
GCCCTACAGTACATCAAGTTCAACAATTGTCTGTACCGCCGTCTTTATGACCCCGTGGACTTTCAGAACATGGTA
CCAGCTGAGTTGGATGACGACGGTAACCTTGTGGAGTCGGCCGACGATGATCCTAGTGAATGCACCCACAACTGT
GGCCTGCACGACGAGATAGACTTATTTCACCAACGGGCCGAATCGTTGCTCCAGGGCGGCCGACTGCTCCTCAGC
CACGCTCCCTTCATTCTCCTGCTCAAGATGCGCGCTCTGCTCGTACTGAAGACGCTGCAAAATGCCCAGCTTGCT
TTCTTCGGCATCCTCCCCCAGGAAATCATTGATCTCATCAAGGCGAGAGTCCTCGACAGTGTCACCTGCAACCGG
CAAGACATGCTGGTGGCCACGCCGGAGACGATGCAGCAGCTAGACGGAGAGCTTGAGAGAGATGTTCAAGTAACG
TGCCAGTACATTCAGACTTGCAGCAGCAAGTTTTGGGATATCTTTACGACAGACACGGACGCCAAATTCCTATCG
GACCCCAGTTCGTACGAACTGGGCCAGCCGTGGGAGGAATACAGCAGGCTCGTCGTCGGCTCCATCTATGCTGCC
Transcript >Ophio5|3499
ATGCACGTCATCCCACGACATTTTTATTCAAGTATCGACCAGCTCAGGAGTCTCAAACCGCGACGCTGTGAGTGG
TGCGGCATCCAATACGGCGACCTAAGGCGCTGCGGAGCCTGTCAGGTTGTCTACTACTGCCAGCCTGCTTGCCAG
CTTGCCGATTCAGTACATCACGCGGAGCCGTGCAATACCATCTTCAACGCCCGCTGCGCCTACACGAGAGAGTGT
CGAAAGGTGCCCCCTGACCTTGCCGCTATAGAGTACAGCCTCATGGCTGTCCACCGTGCCCGAGTCGGAGGCTAC
GGCAAGCCTGGCGGATCCGCCGAGGTGGTTCAGACGGCGTTGAAGGACCTGCAGGATATGTTACGCAGGGTGAGC
TTCAATGAAGTTCGTTCACTCGGCTTGTGCTGCATGCTGCCTGGTCTATTGATTCGTCTCGGCAGGGACGATGAA
GCCCTACAGTACATCAAGTTCAACAATTGTCTGTACCGCCGTCTTTATGACCCCGTGGACTTTCAGAACATGGTA
CCAGCTGAGTTGGATGACGACGGTAACCTTGTGGAGTCGGCCGACGATGATCCTAGTGAATGCACCCACAACTGT
GGCCTGCACGACGAGATAGACTTATTTCACCAACGGGCCGAATCGTTGCTCCAGGGCGGCCGACTGCTCCTCAGC
CACGCTCCCTTCATTCTCCTGCTCAAGATGCGCGCTCTGCTCGTACTGAAGACGCTGCAAAATGCCCAGCTTGCT
TTCTTCGGCATCCTCCCCCAGGAAATCATTGATCTCATCAAGGCGAGAGTCCTCGACAGTGTCACCTGCAACCGG
CAAGACATGCTGGTGGCCACGCCGGAGACGATGCAGCAGCTAGACGGAGAGCTTGAGAGAGATGTTCAAGTAACG
TGCCAGTACATTCAGACTTGCAGCAGCAAGTTTTGGGATATCTTTACGACAGACACGGACGCCAAATTCCTATCG
GACCCCAGTTCGTACGAACTGGGCCAGCCGTGGGAGGAATACAGCAGGCTCGTCGTCGGCTCCATCTATGCTGCC
TAG
Gene >Ophio5|3499
ATGCACGTCATCCCACGACATTTTTATTCAAGTATCGACCAGCTCAGGAGTCTCAAACCGCGACGCTGTGAGTGG
TGCGGCATCCAATACGGCGACCTAAGGCGCTGCGGAGCCTGTCAGGTTGTCTACTACTGCCAGCCTGCTTGCCAG
CTTGCCGATTCAGTACATCACGCGGAGCCGTGCAATACCATCTTCAACGCCCGCTGCGCCTACACGAGAGAGTGT
CGAAAGGTGCCCCCTGACCTTGCCGCTATAGAGTACAGCCTCATGGCTGTCCACCGTGCCCGAGTCGGAGGCTAC
GGCAAGCCTGGCGGATCCGCCGAGGTGGTTCAGACGGCGTTGAAGGACCTGCAGGATATGTTACGCAGGGTGAGC
TTCAATGAAGTTCGTTCACTCGGCTTGTGCTGCATGCTGCCTGGTCTATTGATTCGTCTCGGCAGGGACGATGAA
GCCCTACAGTACATCAAGTTCAACAATTGTCTGTACCGCCGTCTTTATGACCCCGTGGACTTTCAGAACATGGTA
CCAGCTGAGTTGGATGACGACGGTAACCTTGTGGAGTCGGCCGACGATGATCCTAGTGAATGCACCCACAACTGT
GGCCTGCACGACGAGATAGACTTATTTCACCAACGGGCCGAATCGTTGCTCCAGGGCGGCCGACTGCTCCTCAGC
CACGCTCCCTTCATTCTCCTGCTCAAGATGCGCGCTCTGCTCGTACTGAAGACGCTGCAAAATGCCCAGCTTGCT
TTCTTCGGCATCCTCCCCCAGGAAATCATTGATCTCATCAAGGCGAGAGTCCTCGACAGTGTCACCTGCAACCGG
CAAGACATGCTGGTGGCCACGCCGGAGACGATGCAGCAGCTAGACGGAGAGCTTGAGAGAGATGTTCAAGTAACG
TGCCAGTACATTCAGACTTGCAGCAGCAAGTTTTGGGATATCTTTACGACAGACACGGACGCCAAATTCCTATCG
GACCCCAGTTCGTACGAACTGGGCCAGCCGTGGGAGGAATACAGCAGGCTCGTCGTCGGCTCCATCTATGCTGCC
TAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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