Protein ID | Ophio5|3499 |
Gene name | |
Location | scaffold_278:10093..11146 |
Strand | - |
Gene length (bp) | 1053 |
Transcript length (bp) | 1053 |
Coding sequence length (bp) | 1050 |
Protein length (aa) | 350 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01753 | zf-MYND | MYND finger | 2.1E-05 | 23 | 61 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 39 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 3.95 | 0.79 | 7.10 |
CcL | In ants, during behavior modification | 13.87 | 4.81 | 22.93 |
CcD | In ants, recently dead | 1.34 | 0.00 | 2.72 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.000770 | yes |
SC16a | CcD | 0.021712 | yes |
CcL | CcD | 0.000286 | yes |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|3499 MHVIPRHFYSSIDQLRSLKPRRCEWCGIQYGDLRRCGACQVVYYCQPACQLADSVHHAEPCNTIFNARCAYTREC RKVPPDLAAIEYSLMAVHRARVGGYGKPGGSAEVVQTALKDLQDMLRRVSFNEVRSLGLCCMLPGLLIRLGRDDE ALQYIKFNNCLYRRLYDPVDFQNMVPAELDDDGNLVESADDDPSECTHNCGLHDEIDLFHQRAESLLQGGRLLLS HAPFILLLKMRALLVLKTLQNAQLAFFGILPQEIIDLIKARVLDSVTCNRQDMLVATPETMQQLDGELERDVQVT CQYIQTCSSKFWDIFTTDTDAKFLSDPSSYELGQPWEEYSRLVVGSIYAA |
Coding | >Ophio5|3499 ATGCACGTCATCCCACGACATTTTTATTCAAGTATCGACCAGCTCAGGAGTCTCAAACCGCGACGCTGTGAGTGG TGCGGCATCCAATACGGCGACCTAAGGCGCTGCGGAGCCTGTCAGGTTGTCTACTACTGCCAGCCTGCTTGCCAG CTTGCCGATTCAGTACATCACGCGGAGCCGTGCAATACCATCTTCAACGCCCGCTGCGCCTACACGAGAGAGTGT CGAAAGGTGCCCCCTGACCTTGCCGCTATAGAGTACAGCCTCATGGCTGTCCACCGTGCCCGAGTCGGAGGCTAC GGCAAGCCTGGCGGATCCGCCGAGGTGGTTCAGACGGCGTTGAAGGACCTGCAGGATATGTTACGCAGGGTGAGC TTCAATGAAGTTCGTTCACTCGGCTTGTGCTGCATGCTGCCTGGTCTATTGATTCGTCTCGGCAGGGACGATGAA GCCCTACAGTACATCAAGTTCAACAATTGTCTGTACCGCCGTCTTTATGACCCCGTGGACTTTCAGAACATGGTA CCAGCTGAGTTGGATGACGACGGTAACCTTGTGGAGTCGGCCGACGATGATCCTAGTGAATGCACCCACAACTGT GGCCTGCACGACGAGATAGACTTATTTCACCAACGGGCCGAATCGTTGCTCCAGGGCGGCCGACTGCTCCTCAGC CACGCTCCCTTCATTCTCCTGCTCAAGATGCGCGCTCTGCTCGTACTGAAGACGCTGCAAAATGCCCAGCTTGCT TTCTTCGGCATCCTCCCCCAGGAAATCATTGATCTCATCAAGGCGAGAGTCCTCGACAGTGTCACCTGCAACCGG CAAGACATGCTGGTGGCCACGCCGGAGACGATGCAGCAGCTAGACGGAGAGCTTGAGAGAGATGTTCAAGTAACG TGCCAGTACATTCAGACTTGCAGCAGCAAGTTTTGGGATATCTTTACGACAGACACGGACGCCAAATTCCTATCG GACCCCAGTTCGTACGAACTGGGCCAGCCGTGGGAGGAATACAGCAGGCTCGTCGTCGGCTCCATCTATGCTGCC |
Transcript | >Ophio5|3499 ATGCACGTCATCCCACGACATTTTTATTCAAGTATCGACCAGCTCAGGAGTCTCAAACCGCGACGCTGTGAGTGG TGCGGCATCCAATACGGCGACCTAAGGCGCTGCGGAGCCTGTCAGGTTGTCTACTACTGCCAGCCTGCTTGCCAG CTTGCCGATTCAGTACATCACGCGGAGCCGTGCAATACCATCTTCAACGCCCGCTGCGCCTACACGAGAGAGTGT CGAAAGGTGCCCCCTGACCTTGCCGCTATAGAGTACAGCCTCATGGCTGTCCACCGTGCCCGAGTCGGAGGCTAC GGCAAGCCTGGCGGATCCGCCGAGGTGGTTCAGACGGCGTTGAAGGACCTGCAGGATATGTTACGCAGGGTGAGC TTCAATGAAGTTCGTTCACTCGGCTTGTGCTGCATGCTGCCTGGTCTATTGATTCGTCTCGGCAGGGACGATGAA GCCCTACAGTACATCAAGTTCAACAATTGTCTGTACCGCCGTCTTTATGACCCCGTGGACTTTCAGAACATGGTA CCAGCTGAGTTGGATGACGACGGTAACCTTGTGGAGTCGGCCGACGATGATCCTAGTGAATGCACCCACAACTGT GGCCTGCACGACGAGATAGACTTATTTCACCAACGGGCCGAATCGTTGCTCCAGGGCGGCCGACTGCTCCTCAGC CACGCTCCCTTCATTCTCCTGCTCAAGATGCGCGCTCTGCTCGTACTGAAGACGCTGCAAAATGCCCAGCTTGCT TTCTTCGGCATCCTCCCCCAGGAAATCATTGATCTCATCAAGGCGAGAGTCCTCGACAGTGTCACCTGCAACCGG CAAGACATGCTGGTGGCCACGCCGGAGACGATGCAGCAGCTAGACGGAGAGCTTGAGAGAGATGTTCAAGTAACG TGCCAGTACATTCAGACTTGCAGCAGCAAGTTTTGGGATATCTTTACGACAGACACGGACGCCAAATTCCTATCG GACCCCAGTTCGTACGAACTGGGCCAGCCGTGGGAGGAATACAGCAGGCTCGTCGTCGGCTCCATCTATGCTGCC TAG |
Gene | >Ophio5|3499 ATGCACGTCATCCCACGACATTTTTATTCAAGTATCGACCAGCTCAGGAGTCTCAAACCGCGACGCTGTGAGTGG TGCGGCATCCAATACGGCGACCTAAGGCGCTGCGGAGCCTGTCAGGTTGTCTACTACTGCCAGCCTGCTTGCCAG CTTGCCGATTCAGTACATCACGCGGAGCCGTGCAATACCATCTTCAACGCCCGCTGCGCCTACACGAGAGAGTGT CGAAAGGTGCCCCCTGACCTTGCCGCTATAGAGTACAGCCTCATGGCTGTCCACCGTGCCCGAGTCGGAGGCTAC GGCAAGCCTGGCGGATCCGCCGAGGTGGTTCAGACGGCGTTGAAGGACCTGCAGGATATGTTACGCAGGGTGAGC TTCAATGAAGTTCGTTCACTCGGCTTGTGCTGCATGCTGCCTGGTCTATTGATTCGTCTCGGCAGGGACGATGAA GCCCTACAGTACATCAAGTTCAACAATTGTCTGTACCGCCGTCTTTATGACCCCGTGGACTTTCAGAACATGGTA CCAGCTGAGTTGGATGACGACGGTAACCTTGTGGAGTCGGCCGACGATGATCCTAGTGAATGCACCCACAACTGT GGCCTGCACGACGAGATAGACTTATTTCACCAACGGGCCGAATCGTTGCTCCAGGGCGGCCGACTGCTCCTCAGC CACGCTCCCTTCATTCTCCTGCTCAAGATGCGCGCTCTGCTCGTACTGAAGACGCTGCAAAATGCCCAGCTTGCT TTCTTCGGCATCCTCCCCCAGGAAATCATTGATCTCATCAAGGCGAGAGTCCTCGACAGTGTCACCTGCAACCGG CAAGACATGCTGGTGGCCACGCCGGAGACGATGCAGCAGCTAGACGGAGAGCTTGAGAGAGATGTTCAAGTAACG TGCCAGTACATTCAGACTTGCAGCAGCAAGTTTTGGGATATCTTTACGACAGACACGGACGCCAAATTCCTATCG GACCCCAGTTCGTACGAACTGGGCCAGCCGTGGGAGGAATACAGCAGGCTCGTCGTCGGCTCCATCTATGCTGCC TAG |