Fungal Genomics

General Properties

Protein ID	Ophio5|3462
Gene name
Location	scaffold_274:16900..17137
Strand	+
Gene length (bp)	237
Transcript length (bp)	237
Coding sequence length (bp)	234
Protein length (aa)	78

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Extracellular	Signal peptide	0.0651	0.0462	0.9802	0.0375	0.0517	0.0053	0.0365	0.1736	0.0734	0.0037

SignalP

SignalP signal predicted	Location	Score
Yes	1 - 17	0.999748

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	8.56	0.0	19.64
CcL	In ants, during behavior modification	33.79	10.3	57.28
CcD	In ants, recently dead	16.44	0.0	33.86

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.040010	yes
SC16a	CcD	0.288838	no
CcL	CcD	0.223158	no

Orthologs

Orthofinder run ID	4
Orthogroup	8332
Change Orthofinder run	4: Insect Pathogens

Species	Protein ID
Ophiocordyceps kimflemingae	Ophio5|3462 (this protein)
Ophiocordyceps kimflemingae	Ophio5|6922

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5|3462 MKLNSFFLLTLVTGVLAITESPSPKHDGVEARDNCFHPSSCSVSWAGKCEDYCGRRGFSHMTGDGCGLFRKKCCC IRS
Coding	>Ophio5|3462 ATGAAGCTCAACTCGTTCTTCCTCCTCACACTCGTCACCGGCGTCCTCGCCATCACCGAATCTCCATCTCCCAAG CACGACGGCGTCGAGGCGCGCGACAACTGCTTCCACCCGAGTTCCTGCTCCGTCTCTTGGGCCGGCAAGTGCGAG GACTATTGCGGTCGCCGGGGCTTCTCTCATATGACTGGCGATGGCTGCGGCCTCTTCCGGAAGAAGTGTTGCTGC ATTCGCAGT
Transcript	>Ophio5|3462 ATGAAGCTCAACTCGTTCTTCCTCCTCACACTCGTCACCGGCGTCCTCGCCATCACCGAATCTCCATCTCCCAAG CACGACGGCGTCGAGGCGCGCGACAACTGCTTCCACCCGAGTTCCTGCTCCGTCTCTTGGGCCGGCAAGTGCGAG GACTATTGCGGTCGCCGGGGCTTCTCTCATATGACTGGCGATGGCTGCGGCCTCTTCCGGAAGAAGTGTTGCTGC ATTCGCAGTTAA
Gene	>Ophio5|3462 ATGAAGCTCAACTCGTTCTTCCTCCTCACACTCGTCACCGGCGTCCTCGCCATCACCGAATCTCCATCTCCCAAG CACGACGGCGTCGAGGCGCGCGACAACTGCTTCCACCCGAGTTCCTGCTCCGTCTCTTGGGCCGGCAAGTGCGAG GACTATTGCGGTCGCCGGGGCTTCTCTCATATGACTGGCGATGGCTGCGGCCTCTTCCGGAAGAAGTGTTGCTGC ATTCGCAGTTAA