© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3443 |
| Gene name | |
| Location | scaffold_273:1702..3673 |
| Strand | + |
| Gene length (bp) | 1971 |
| Transcript length (bp) | 1566 |
| Coding sequence length (bp) | 1563 |
| Protein length (aa) | 521 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02535 | Zip | ZIP Zinc transporter | 1.1E-64 | 180 | 518 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12436|ZRT2_YEAST | Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT2 PE=1 SV=1 | 164 | 521 | 5.0E-70 |
| sp|O94639|ZRT1_SCHPO | Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrt1 PE=1 SV=1 | 170 | 521 | 2.0E-56 |
| sp|P32804|ZRT1_YEAST | Zinc-regulated transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT1 PE=1 SV=1 | 176 | 521 | 4.0E-55 |
| sp|Q8S3W4|ZIP8_ARATH | Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1 | 161 | 521 | 3.0E-32 |
| sp|Q8W245|ZIP10_ARATH | Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=1 SV=2 | 161 | 521 | 3.0E-29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12436|ZRT2_YEAST | Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT2 PE=1 SV=1 | 164 | 521 | 5.0E-70 |
| sp|O94639|ZRT1_SCHPO | Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrt1 PE=1 SV=1 | 170 | 521 | 2.0E-56 |
| sp|P32804|ZRT1_YEAST | Zinc-regulated transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT1 PE=1 SV=1 | 176 | 521 | 4.0E-55 |
| sp|Q8S3W4|ZIP8_ARATH | Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1 | 161 | 521 | 3.0E-32 |
| sp|Q8W245|ZIP10_ARATH | Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=1 SV=2 | 161 | 521 | 3.0E-29 |
| sp|O81850|IRT2_ARATH | Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1 | 163 | 521 | 9.0E-29 |
| sp|Q9SLG3|ZIP3_ARATH | Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1 | 143 | 521 | 3.0E-28 |
| sp|Q38856|IRT1_ARATH | Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=2 | 141 | 521 | 7.0E-28 |
| sp|Q8W246|ZIP7_ARATH | Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1 | 168 | 521 | 2.0E-27 |
| sp|O23039|ZIP5_ARATH | Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1 | 159 | 521 | 4.0E-27 |
| sp|O81123|ZIP1_ARATH | Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1 | 180 | 521 | 7.0E-27 |
| sp|Q6L8G0|ZIP5_ORYSJ | Zinc transporter 5 OS=Oryza sativa subsp. japonica GN=ZIP5 PE=2 SV=1 | 178 | 521 | 8.0E-24 |
| sp|Q75HB1|IRT1_ORYSJ | Fe(2+) transport protein 1 OS=Oryza sativa subsp. japonica GN=IRT1 PE=2 SV=1 | 155 | 521 | 1.0E-23 |
| sp|O04089|ZIP4_ARATH | Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1 | 168 | 521 | 3.0E-20 |
| sp|Q7XLD4|ZIP3_ORYSJ | Zinc transporter 3 OS=Oryza sativa subsp. japonica GN=ZIP3 PE=1 SV=2 | 176 | 521 | 4.0E-20 |
| sp|Q6L8G1|IRT2_ORYSJ | Fe(2+) transport protein 2 OS=Oryza sativa subsp. japonica GN=IRT2 PE=2 SV=1 | 168 | 521 | 2.0E-19 |
| sp|A3BI11|ZIP8_ORYSJ | Zinc transporter 8 OS=Oryza sativa subsp. japonica GN=ZIP8 PE=2 SV=1 | 370 | 521 | 6.0E-19 |
| sp|Q9FIS2|ZIP12_ARATH | Probable zinc transporter 12 OS=Arabidopsis thaliana GN=ZIP12 PE=3 SV=1 | 178 | 521 | 8.0E-19 |
| sp|O64738|ZIP6_ARATH | Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=3 SV=1 | 180 | 521 | 2.0E-18 |
| sp|O82643|ZIP9_ARATH | Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1 | 208 | 521 | 2.0E-17 |
| sp|Q0DHE3|ZIP9_ORYSJ | Zinc transporter 9 OS=Oryza sativa subsp. japonica GN=ZIP9 PE=3 SV=3 | 180 | 521 | 5.0E-17 |
| sp|Q8LE59|IRT3_ARATH | Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=3 | 362 | 521 | 1.0E-16 |
| sp|Q6L8F9|ZIP6_ORYSJ | Zinc transporter 6 OS=Oryza sativa subsp. japonica GN=ZIP6 PE=2 SV=1 | 364 | 521 | 2.0E-16 |
| sp|Q6L8F7|ZIP7_ORYSJ | Zinc transporter 7 OS=Oryza sativa subsp. japonica GN=ZIP7 PE=2 SV=1 | 168 | 521 | 8.0E-16 |
| sp|Q6ZJ91|ZIP4_ORYSJ | Zinc transporter 4 OS=Oryza sativa subsp. japonica GN=ZIP4 PE=2 SV=1 | 370 | 521 | 2.0E-15 |
| sp|Q5Z653|ZIP10_ORYSJ | Zinc transporter 10 OS=Oryza sativa subsp. japonica GN=ZIP10 PE=3 SV=2 | 364 | 509 | 2.0E-14 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0005575 | cellular_component | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0006812 | cation transport | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 180 | 202 | 22 |
| 2 | 214 | 236 | 22 |
| 3 | 256 | 278 | 22 |
| 4 | 360 | 382 | 22 |
| 5 | 397 | 419 | 22 |
| 6 | 426 | 448 | 22 |
| 7 | 463 | 482 | 19 |
| 8 | 501 | 518 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3443 MTVPSSFARFTTWEIRGSSGWTIKRERERGERGRKTTKSSSLCRGLRAPFVVDVGRKQARKGNSSSDRRLATEEP IPREREREREREQESSQGRGRRQERRKSGEADDDNDDNVKSQLPLEPLLPVLFDPANNLSFSTPPFHSLPPMSLI LRPRAHADGPEPTSAEHCHDEAVALGKLPLRIGAIFILLVLAFIAAVAPIMLSRQARMRGTKAVFFIFKFVGTGV ILATAWMHLLAPAVEQLGDACVGHDWPVMAGYPWAFCIGLMTVMVMFLVELVVSTVAASGGDDDDDDGNRRHLVT SAGSDSDIDPSSRDVLTSKRSVDDEKNVAQTATHPRPPTSDVQGRQSERKSGAVANNSGGLAGQLTATLILEFGV VFHSVFIGLTLGTTADDEFTILLVVLVFHQIFEGLGLGSRLAVAPWPARKGWVPWVLALGFALSTPIGVAAALGA KPTNAATQKLVNGIFDAISAGILMYTGLVELLAHEMLFEPAMRRASLRRRLSAYGCVALGVFVMALLAKWA |
| Coding | >Ophio5|3443 ATGACGGTTCCTTCTTCGTTCGCCCGTTTCACCACATGGGAAATCCGGGGTTCAAGCGGGTGGACCATCAAGAGA GAGAGAGAGAGAGGGGAGAGGGGGAGAAAAACAACAAAAAGCAGCAGCCTTTGCCGAGGACTGAGAGCCCCCTTC GTCGTCGACGTCGGAAGAAAACAGGCCAGGAAGGGAAATTCGTCGTCGGATCGACGGTTAGCGACAGAAGAACCG ATTCCGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGTCGAGCCAAGGACGCGGCCGACGACAGGAAAGA CGCAAGTCGGGTGAGGCTGACGACGATAACGACGACAACGTCAAAAGCCAACTTCCACTTGAACCGCTTTTGCCC GTCCTCTTTGACCCCGCAAACAATCTTTCATTTTCGACTCCTCCTTTTCACTCTTTGCCTCCCATGTCACTCATC CTCCGGCCAAGGGCCCACGCCGACGGGCCGGAACCGACGTCGGCTGAGCACTGCCATGACGAGGCCGTGGCTCTC GGCAAGCTGCCGCTTCGCATCGGCGCCATCTTCATCCTGCTGGTGCTTGCCTTCATCGCGGCCGTGGCGCCGATA ATGTTGTCGCGCCAGGCTCGGATGCGCGGTACCAAGGCCGTCTTCTTCATCTTCAAATTTGTCGGCACCGGTGTC ATTCTCGCCACGGCTTGGATGCATCTCTTAGCTCCGGCCGTCGAACAGCTGGGCGACGCTTGTGTTGGCCACGAC TGGCCGGTCATGGCCGGCTACCCGTGGGCGTTTTGCATTGGTTTGATGACTGTCATGGTCATGTTCCTCGTGGAG CTGGTTGTCTCGACCGTGGCTGCGTCTGGGGGTGATGATGATGATGATGATGGAAACCGTCGTCATCTTGTGACC AGCGCCGGTTCGGATTCGGACATTGACCCGTCGTCCCGAGATGTTCTCACCTCCAAAAGGTCCGTCGACGACGAA AAGAACGTCGCCCAAACTGCGACTCATCCCCGACCTCCAACCAGCGACGTCCAAGGTCGCCAATCCGAACGCAAA TCTGGAGCAGTCGCCAACAACAGCGGCGGACTCGCGGGACAGCTCACGGCGACTCTAATACTCGAGTTCGGCGTC GTCTTCCACAGCGTCTTCATCGGCCTCACACTCGGCACCACCGCCGACGACGAGTTCACCATTCTTCTCGTCGTC CTCGTCTTCCACCAAATCTTCGAGGGTCTGGGTCTCGGCAGCCGACTGGCAGTGGCGCCGTGGCCCGCGCGAAAG GGCTGGGTGCCGTGGGTGCTGGCCCTCGGGTTCGCGCTTTCGACCCCCATCGGCGTGGCGGCCGCGCTGGGAGCC AAGCCGACGAATGCGGCGACGCAGAAGCTCGTCAATGGCATCTTCGACGCAATCAGCGCCGGCATCCTCATGTAC ACTGGCCTCGTCGAATTGCTGGCTCATGAGATGTTGTTTGAGCCGGCTATGCGTCGCGCCTCGTTGCGCCGTCGA CTGTCAGCCTATGGCTGTGTTGCTCTCGGCGTCTTCGTCATGGCTTTGTTGGCCAAGTGGGCG |
| Transcript | >Ophio5|3443 ATGACGGTTCCTTCTTCGTTCGCCCGTTTCACCACATGGGAAATCCGGGGTTCAAGCGGGTGGACCATCAAGAGA GAGAGAGAGAGAGGGGAGAGGGGGAGAAAAACAACAAAAAGCAGCAGCCTTTGCCGAGGACTGAGAGCCCCCTTC GTCGTCGACGTCGGAAGAAAACAGGCCAGGAAGGGAAATTCGTCGTCGGATCGACGGTTAGCGACAGAAGAACCG ATTCCGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGTCGAGCCAAGGACGCGGCCGACGACAGGAAAGA CGCAAGTCGGGTGAGGCTGACGACGATAACGACGACAACGTCAAAAGCCAACTTCCACTTGAACCGCTTTTGCCC GTCCTCTTTGACCCCGCAAACAATCTTTCATTTTCGACTCCTCCTTTTCACTCTTTGCCTCCCATGTCACTCATC CTCCGGCCAAGGGCCCACGCCGACGGGCCGGAACCGACGTCGGCTGAGCACTGCCATGACGAGGCCGTGGCTCTC GGCAAGCTGCCGCTTCGCATCGGCGCCATCTTCATCCTGCTGGTGCTTGCCTTCATCGCGGCCGTGGCGCCGATA ATGTTGTCGCGCCAGGCTCGGATGCGCGGTACCAAGGCCGTCTTCTTCATCTTCAAATTTGTCGGCACCGGTGTC ATTCTCGCCACGGCTTGGATGCATCTCTTAGCTCCGGCCGTCGAACAGCTGGGCGACGCTTGTGTTGGCCACGAC TGGCCGGTCATGGCCGGCTACCCGTGGGCGTTTTGCATTGGTTTGATGACTGTCATGGTCATGTTCCTCGTGGAG CTGGTTGTCTCGACCGTGGCTGCGTCTGGGGGTGATGATGATGATGATGATGGAAACCGTCGTCATCTTGTGACC AGCGCCGGTTCGGATTCGGACATTGACCCGTCGTCCCGAGATGTTCTCACCTCCAAAAGGTCCGTCGACGACGAA AAGAACGTCGCCCAAACTGCGACTCATCCCCGACCTCCAACCAGCGACGTCCAAGGTCGCCAATCCGAACGCAAA TCTGGAGCAGTCGCCAACAACAGCGGCGGACTCGCGGGACAGCTCACGGCGACTCTAATACTCGAGTTCGGCGTC GTCTTCCACAGCGTCTTCATCGGCCTCACACTCGGCACCACCGCCGACGACGAGTTCACCATTCTTCTCGTCGTC CTCGTCTTCCACCAAATCTTCGAGGGTCTGGGTCTCGGCAGCCGACTGGCAGTGGCGCCGTGGCCCGCGCGAAAG GGCTGGGTGCCGTGGGTGCTGGCCCTCGGGTTCGCGCTTTCGACCCCCATCGGCGTGGCGGCCGCGCTGGGAGCC AAGCCGACGAATGCGGCGACGCAGAAGCTCGTCAATGGCATCTTCGACGCAATCAGCGCCGGCATCCTCATGTAC ACTGGCCTCGTCGAATTGCTGGCTCATGAGATGTTGTTTGAGCCGGCTATGCGTCGCGCCTCGTTGCGCCGTCGA CTGTCAGCCTATGGCTGTGTTGCTCTCGGCGTCTTCGTCATGGCTTTGTTGGCCAAGTGGGCGTAG |
| Gene | >Ophio5|3443 ATGACGGTTCCTTCTTCGTTCGCCCGTTTCACCACATGGGAAATCCGGGGTTCAAGCGGGTGGACCATCAAGGTC CTTCGGCCGGGTCCGCACATGCCTGCCCTTTGCGCACCTTGATGAGAAGCAACGGCGAGAAAGAGCCAATACAAA GGCTAAAGCAATTAAAATTCAACGGCCCCCCCCTTGACCCTTGTCCCACCCCGGGGGTTTTTTCCTCTCTCTCTC TCTCTCTAGCCTGAACTCTTTTTTCTCTTTCATCGAGTTTCGTTTTCTTTTTGAAAAGCCATCGTCTCCCTTTGG GTTTTTTTTTTAAAGTTGTCTCGTATAGATAGAGCTGTAGCGGATCTTACGACCCGCTGAATCAAAAGGGAGACT GACAGACAGTGAGTGAGAGACAGAGAGAGAGAGAGAGAGGGGAGAGGGGGAGAAAAACAACAAAAAGTGAGGCAT TGATTCACGACGGAACGCATTGCAAAGAGACCTGACCTGAGCCGCGTCACCTGCACATCTGTCACGGCAGGCAGC AGCCTTTGCCGAGGACTGAGAGCCCCCTTCGTCGTCGACGTCGGAAGAAAACAGGCCAGGAAGGGAAATTCGTCG TCGGATCGACGGTTAGCGACAGAAGAACCGATTCCGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGTCG AGCCAAGGACGCGGCCGACGACAGGAAAGACGCAAGTCGGGTGAGGCTGACGACGATAACGACGACAACGTCAAA AGCCAACTTCCACTTGAACCGCTTTTGCCCGTCCTCTTTGACCCCGCAAACAATCTTTCATTTTCGACTCCTCCT TTTCACTCTTTGCCTCCCATGTCACTCATCCTCCGGCCAAGGGCCCACGCCGACGGGCCGGAACCGACGTCGGCT GAGCACTGCCATGACGAGGCCGTGGCTCTCGGCAAGCTGCCGCTTCGCATCGGCGCCATCTTCATCCTGCTGGTG CTTGCCTTCATCGCGGCCGTGGCGCCGATAATGTTGTCGCGCCAGGCTCGGATGCGCGGTACCAAGGCCGTCTTC TTCATCTTCAAATTTGTCGGCACCGGTGTCATTCTCGCCACGGCTTGGATGCATCTCTTAGCTCCGGCCGTCGAA CAGCTGGGCGACGCTTGTGTTGGCCACGACTGGCCGGTCATGGCCGGCTACCCGTGGGCGTTTTGCATTGGTTTG ATGACTGTCATGGTCATGTTCCTCGTGGAGCTGGTTGTCTCGACCGTGGCTGCGTCTGGGGGTGATGATGATGAT GATGATGGAAACCGTCGTCATCTTGTGACCAGCGCCGGTTCGGATTCGGACATTGACCCGTCGTCCCGAGATGTT CTCACCTCCAAAAGGTCCGTCGACGACGAAAAGAACGTCGCCCAAACTGCGACTCATCCCCGACCTCCAACCAGC GACGTCCAAGGTCGCCAATCCGAACGCAAATCTGGAGCAGTCGCCAACAACAGCGGCGGACTCGCGGGACAGCTC ACGGCGACTCTAATACTCGAGTTCGGCGTCGTCTTCCACAGCGTCTTCATCGGCCTCACACTCGGCACCACCGCC GACGACGAGTTCACCATTCTTCTCGTCGTCCTCGTCTTCCACCAAATCTTCGAGGGTCTGGGTCTCGGCAGCCGA CTGGCAGTGGCGCCGTGGCCCGCGCGAAAGGGCTGGGTGCCGTGGGTGCTGGCCCTCGGGTTCGCGCTTTCGACC CCCATCGGCGTGGCGGCCGCGCTGGGAGCCAAGCCGACGAATGCGGCGACGCAGAAGCTCGTCAATGGCATCTTC GACGCAATCAGCGCCGGCATCCTCATGTACACTGGCCTCGTCGAATTGCTGGCTCATGAGATGTTGTTTGAGCCG GCTATGCGTCGCGCCTCGTTGCGCCGTCGACTGTCAGCCTATGGCTGTGTTGCTCTCGGCGTCTTCGTCATGGCT TTGTTGGCCAAGTGGGCGTAG |