© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3420 |
| Gene name | |
| Location | scaffold_271:3659..4215 |
| Strand | - |
| Gene length (bp) | 556 |
| Transcript length (bp) | 504 |
| Coding sequence length (bp) | 501 |
| Protein length (aa) | 167 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08589 | ATG43 | Autophagy receptor ATG43 | 1.5E-35 | 14 | 111 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0140580 | mitochondrion autophagosome adaptor activity | Yes |
| GO:0000423 | mitophagy | Yes |
| GO:0008150 | biological_process | No |
| GO:0006996 | organelle organization | No |
| GO:0007005 | mitochondrion organization | No |
| GO:0061919 | process utilizing autophagic mechanism | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0043495 | protein-membrane adaptor activity | No |
| GO:0003674 | molecular_function | No |
| GO:0009987 | cellular process | No |
| GO:0061912 | selective autophagy | No |
| GO:0022411 | cellular component disassembly | No |
| GO:0000422 | autophagy of mitochondrion | No |
| GO:0009056 | catabolic process | No |
| GO:0016043 | cellular component organization | No |
| GO:0006914 | autophagy | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0016236 | macroautophagy | No |
| GO:0061726 | mitochondrion disassembly | No |
| GO:0030674 | protein-macromolecule adaptor activity | No |
| GO:1903008 | organelle disassembly | No |
| GO:0060090 | molecular adaptor activity | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3420 MSSLHGELIVGELAATVQAGHIRADPDPRLDIAPSTAAEKKQVLSVESRDRACKTNDDIDGNDEEDDIPCSVLRP TPRRRNLPPLPDLRFEQSYLHSISNADTWWKVMLITVRDQMVMPLAQGLIYNLLLNGWQYSRRNARFHGTSSGAR LRRWWYGVNNWSIPSSK |
| Coding | >Ophio5|3420 ATGTCCTCCCTCCACGGCGAACTGATCGTCGGCGAGCTGGCCGCTACCGTTCAGGCCGGTCACATTCGCGCAGAC CCGGATCCACGACTTGACATCGCTCCGTCTACCGCCGCCGAGAAGAAGCAGGTCCTCTCGGTAGAGAGCCGCGAC CGCGCTTGCAAGACCAACGACGACATCGACGGTAACGACGAAGAAGACGACATCCCCTGCAGTGTCCTCCGGCCG ACCCCGCGGAGGCGCAACTTGCCACCCTTGCCAGACCTGCGCTTCGAGCAGAGCTACCTCCATAGCATATCCAAC GCCGACACGTGGTGGAAGGTGATGCTCATCACTGTTCGCGACCAGATGGTCATGCCCCTGGCTCAGGGCCTGATT TACAACCTCCTCTTGAATGGATGGCAGTATTCGAGACGAAACGCAAGATTCCATGGAACCTCGTCAGGAGCCAGA CTCAGGAGGTGGTGGTACGGCGTGAACAATTGGTCCATACCCAGCAGCAAG |
| Transcript | >Ophio5|3420 ATGTCCTCCCTCCACGGCGAACTGATCGTCGGCGAGCTGGCCGCTACCGTTCAGGCCGGTCACATTCGCGCAGAC CCGGATCCACGACTTGACATCGCTCCGTCTACCGCCGCCGAGAAGAAGCAGGTCCTCTCGGTAGAGAGCCGCGAC CGCGCTTGCAAGACCAACGACGACATCGACGGTAACGACGAAGAAGACGACATCCCCTGCAGTGTCCTCCGGCCG ACCCCGCGGAGGCGCAACTTGCCACCCTTGCCAGACCTGCGCTTCGAGCAGAGCTACCTCCATAGCATATCCAAC GCCGACACGTGGTGGAAGGTGATGCTCATCACTGTTCGCGACCAGATGGTCATGCCCCTGGCTCAGGGCCTGATT TACAACCTCCTCTTGAATGGATGGCAGTATTCGAGACGAAACGCAAGATTCCATGGAACCTCGTCAGGAGCCAGA CTCAGGAGGTGGTGGTACGGCGTGAACAATTGGTCCATACCCAGCAGCAAGTAA |
| Gene | >Ophio5|3420 ATGTCCTCCCTCCACGGCGAACTGATCGTCGGCGAGCTGGCCGCTACCGTTCAGGCCGGTCACATTCGCGCAGAC CCGGATCCACGACTTGACATCGCTCCGTCTACCGCCGCCGAGAAGAAGCAGGTCCTCTCGGTAGAGAGCCGCGAC CGCGCTTGCAAGACCAACGACGACATCGACGGTAACGACGAAGAAGACGACATCCCCTGCAGTGTCCTCCGGCCG ACCCCGCGGAGGCGCAACTTGCCACCCTTGCCAGACCTGCGCTTCGAGCAGAGCTACCTCCATAGCATATCCAAC GCCGACACGTGGTGGAAGGTGATGCTCATCACTGTTCGCGACCAGGTATGCTTTCATCACAGGGACAGCTACCTA GCTGAACTCTCACGCCCCGCAGATGGTCATGCCCCTGGCTCAGGGCCTGATTTACAACCTCCTCTTGAATGGATG GCAGTATTCGAGACGAAACGCAAGATTCCATGGAACCTCGTCAGGAGCCAGACTCAGGAGGTGGTGGTACGGCGT GAACAATTGGTCCATACCCAGCAGCAAGTAA |