Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|341
Gene name
Locationscaffold_108:2178..3597
Strand+
Gene length (bp)1419
Transcript length (bp)1293
Coding sequence length (bp)1290
Protein length (aa) 430

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07970 COPIIcoated_ERV Endoplasmic reticulum vesicle transporter 3.2E-88 141 412
PF13850 ERGIC_N Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 2.1E-29 7 96

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q09895|YAI8_SCHPO Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1 1 424 4.0E-117
sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1 1 424 1.0E-89
sp|P39727|ERV46_YEAST ER-derived vesicles protein ERV46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV46 PE=1 SV=2 4 421 2.0E-88
sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1 1 424 2.0E-88
sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1 1 424 1.0E-86
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Swissprot ID Swissprot Description Start End E-value
sp|Q09895|YAI8_SCHPO Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1 1 424 4.0E-117
sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1 1 424 1.0E-89
sp|P39727|ERV46_YEAST ER-derived vesicles protein ERV46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV46 PE=1 SV=2 4 421 2.0E-88
sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1 1 424 2.0E-88
sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1 1 424 1.0E-86
sp|Q9Y282|ERGI3_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens GN=ERGIC3 PE=1 SV=1 1 424 2.0E-84
sp|Q5EAE0|ERGI3_BOVIN Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus GN=ERGIC3 PE=2 SV=1 1 424 3.0E-84
sp|Q5R8G3|ERGI3_PONAB Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii GN=ERGIC3 PE=2 SV=1 1 424 8.0E-84
sp|Q9CQE7|ERGI3_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Mus musculus GN=Ergic3 PE=1 SV=1 1 424 8.0E-83
sp|Q54DW2|ERGI3_DICDI Probable endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Dictyostelium discoideum GN=ergic3 PE=3 SV=1 5 424 2.0E-81
sp|Q4R8X1|ERGI3_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Macaca fascicularis GN=ERGIC3 PE=2 SV=1 1 424 7.0E-81
sp|Q7T2D4|ERGI2_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Danio rerio GN=ergic2 PE=2 SV=1 7 406 1.0E-25
sp|Q4R5C3|ERGI2_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Macaca fascicularis GN=ERGIC2 PE=2 SV=1 5 406 7.0E-25
sp|Q9CR89|ERGI2_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Mus musculus GN=Ergic2 PE=1 SV=1 5 406 8.0E-24
sp|Q5EHU7|ERGI2_GECJA Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Gecko japonicus GN=ERGIC2 PE=2 SV=1 5 406 2.0E-23
sp|Q96RQ1|ERGI2_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Homo sapiens GN=ERGIC2 PE=1 SV=2 5 406 6.0E-23
sp|Q4V8Y6|ERGI1_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Danio rerio GN=ergic1 PE=2 SV=1 190 426 4.0E-20
sp|O94283|ERV41_SCHPO ER-derived vesicles protein 41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv41 PE=1 SV=1 1 413 2.0E-18
sp|Q9DC16|ERGI1_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Mus musculus GN=Ergic1 PE=1 SV=1 190 426 3.0E-18
sp|Q969X5|ERGI1_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Homo sapiens GN=ERGIC1 PE=1 SV=1 190 426 1.0E-17
sp|Q6NS19|ERGI1_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Xenopus laevis GN=ergic1 PE=2 SV=1 190 426 4.0E-16
sp|Q9T042|PDI54_ARATH Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana GN=PDIL5-4 PE=2 SV=1 198 425 1.0E-10
sp|Q69SA9|PDI54_ORYSJ Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp. japonica GN=PDIL5-4 PE=2 SV=1 190 424 3.0E-10
sp|Q9LJU2|PDI53_ARATH Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3 PE=2 SV=1 1 151 3.0E-08
sp|Q9DC16|ERGI1_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Mus musculus GN=Ergic1 PE=1 SV=1 7 116 8.0E-08
sp|Q969X5|ERGI1_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Homo sapiens GN=ERGIC1 PE=1 SV=1 7 116 8.0E-08
sp|Q9LJU2|PDI53_ARATH Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3 PE=2 SV=1 198 424 2.0E-07
sp|Q6NS19|ERGI1_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Xenopus laevis GN=ergic1 PE=2 SV=1 7 98 3.0E-07
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 54 0.5

Transmembrane Domains

Domain # Start End Length
1 25 47 22
2 389 411 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|341
MPAKSRFTRLDAFTKTVDEARIRTTSGGIVTIVSLLVVLFLSWGEWVEYRRVVIRPELVVDKGRGERMEIHLNFT
FPKMPCELLTLDVMDVSGEQQHGVAHGVSKVRLRPQSQGGGVIDVKSLALHDEKADHLDPKYCGECYGAAPLGTA
TKPGCCNTCDEVREAYAAQGWAFGRGEGVEQCEREHYAEKLDAQREEGCRIEGALQVNKVVGNFHLAPGRSFSNG
NIHVHDLKNYWDTPDGKKHDFTHTIHQLRFGPQLPDDVKQKLGGSGAMPWTNHHLNPLDGAQHDTTDSNLNYMYF
VKIVPTSYLPLGWEKKMQRLPGVMDGSADGSVETHQYSVTSHKRSLSGGNDAAEGHAERQHSKGGIPGVFFSYDI
SPMKVINREEQSKSFLGFLAGLCAIVGGTLTVAAAVDRGLFEGATRLKKMRSKDL
Coding >Ophio5|341
ATGCCGGCCAAGTCACGCTTCACGAGGCTCGATGCCTTTACAAAAACGGTCGACGAGGCGCGCATCCGGACCACA
AGCGGTGGCATCGTGACCATCGTGTCGCTACTGGTCGTCCTGTTCCTGTCGTGGGGAGAATGGGTCGAATATCGT
CGTGTGGTGATACGCCCCGAGCTAGTGGTGGACAAGGGCCGAGGCGAACGCATGGAGATTCATCTCAACTTTACC
TTTCCCAAGATGCCCTGTGAGCTCCTCACACTCGATGTCATGGACGTCTCGGGCGAGCAGCAGCACGGCGTCGCC
CATGGCGTCAGCAAGGTCCGACTGCGGCCCCAATCCCAAGGCGGCGGCGTCATCGACGTCAAGTCTCTGGCACTC
CACGACGAAAAGGCCGACCACCTCGACCCCAAGTACTGTGGCGAGTGCTACGGAGCGGCGCCACTGGGCACGGCG
ACGAAGCCCGGCTGCTGCAACACCTGCGACGAGGTCCGCGAGGCATATGCCGCCCAGGGCTGGGCATTTGGCAGG
GGCGAGGGCGTCGAGCAGTGCGAGCGCGAGCACTACGCTGAGAAGCTCGACGCGCAGAGAGAGGAGGGCTGCCGC
ATCGAGGGCGCCCTCCAGGTCAACAAGGTGGTTGGCAACTTTCACCTGGCACCCGGACGCAGCTTCAGCAATGGC
AACATTCATGTCCACGATCTCAAGAACTACTGGGACACGCCCGACGGAAAGAAGCACGACTTTACCCACACCATC
CATCAGCTGCGATTCGGCCCTCAGCTCCCGGACGACGTCAAGCAGAAGCTGGGAGGCTCCGGGGCGATGCCATGG
ACCAACCACCACCTCAATCCGCTGGATGGGGCCCAGCACGACACCACCGACTCGAACCTCAACTACATGTATTTC
GTCAAGATCGTCCCCACGTCATACCTGCCCCTTGGCTGGGAGAAGAAGATGCAGCGGCTGCCCGGCGTCATGGAC
GGCAGCGCCGACGGCAGCGTCGAGACACACCAGTACTCTGTCACGAGCCACAAGCGGAGCCTCAGCGGCGGTAAT
GACGCGGCCGAGGGCCACGCCGAGCGCCAGCACTCCAAGGGCGGCATACCGGGCGTGTTCTTCTCATATGACATT
TCTCCGATGAAAGTGATCAACCGCGAGGAGCAGTCCAAGTCCTTCCTCGGGTTCCTGGCAGGTCTTTGTGCCATT
GTCGGTGGCACGCTGACAGTGGCTGCCGCCGTGGACCGCGGGCTGTTTGAGGGTGCGACGCGATTGAAGAAGATG
CGATCGAAAGACCTG
Transcript >Ophio5|341
ATGCCGGCCAAGTCACGCTTCACGAGGCTCGATGCCTTTACAAAAACGGTCGACGAGGCGCGCATCCGGACCACA
AGCGGTGGCATCGTGACCATCGTGTCGCTACTGGTCGTCCTGTTCCTGTCGTGGGGAGAATGGGTCGAATATCGT
CGTGTGGTGATACGCCCCGAGCTAGTGGTGGACAAGGGCCGAGGCGAACGCATGGAGATTCATCTCAACTTTACC
TTTCCCAAGATGCCCTGTGAGCTCCTCACACTCGATGTCATGGACGTCTCGGGCGAGCAGCAGCACGGCGTCGCC
CATGGCGTCAGCAAGGTCCGACTGCGGCCCCAATCCCAAGGCGGCGGCGTCATCGACGTCAAGTCTCTGGCACTC
CACGACGAAAAGGCCGACCACCTCGACCCCAAGTACTGTGGCGAGTGCTACGGAGCGGCGCCACTGGGCACGGCG
ACGAAGCCCGGCTGCTGCAACACCTGCGACGAGGTCCGCGAGGCATATGCCGCCCAGGGCTGGGCATTTGGCAGG
GGCGAGGGCGTCGAGCAGTGCGAGCGCGAGCACTACGCTGAGAAGCTCGACGCGCAGAGAGAGGAGGGCTGCCGC
ATCGAGGGCGCCCTCCAGGTCAACAAGGTGGTTGGCAACTTTCACCTGGCACCCGGACGCAGCTTCAGCAATGGC
AACATTCATGTCCACGATCTCAAGAACTACTGGGACACGCCCGACGGAAAGAAGCACGACTTTACCCACACCATC
CATCAGCTGCGATTCGGCCCTCAGCTCCCGGACGACGTCAAGCAGAAGCTGGGAGGCTCCGGGGCGATGCCATGG
ACCAACCACCACCTCAATCCGCTGGATGGGGCCCAGCACGACACCACCGACTCGAACCTCAACTACATGTATTTC
GTCAAGATCGTCCCCACGTCATACCTGCCCCTTGGCTGGGAGAAGAAGATGCAGCGGCTGCCCGGCGTCATGGAC
GGCAGCGCCGACGGCAGCGTCGAGACACACCAGTACTCTGTCACGAGCCACAAGCGGAGCCTCAGCGGCGGTAAT
GACGCGGCCGAGGGCCACGCCGAGCGCCAGCACTCCAAGGGCGGCATACCGGGCGTGTTCTTCTCATATGACATT
TCTCCGATGAAAGTGATCAACCGCGAGGAGCAGTCCAAGTCCTTCCTCGGGTTCCTGGCAGGTCTTTGTGCCATT
GTCGGTGGCACGCTGACAGTGGCTGCCGCCGTGGACCGCGGGCTGTTTGAGGGTGCGACGCGATTGAAGAAGATG
CGATCGAAAGACCTGTGA
Gene >Ophio5|341
ATGCCGGCCAAGTCACGCTTCACGAGGCTCGATGCCTTTACAAAAACGGTCGACGAGGCGCGCATCCGGACCACA
AGCGGTGGCATCGTGACCATCGTGTCGCTACTGGTCGTCCTGTTCCTGTCGTGGGGAGAATGGGTCGAATATCGT
CGTGTGGTGATACGCCCCGAGCTAGTGGTGGACAAGGGCCGAGGTAGGCGCATGTGTCTAGGATGCGACCTGCCC
ACCGTTGGTTGACCGGGCCCTTCACAGGCGAACGCATGGAGATTCATCTCAACTTTACCTTTCCCAAGATGCCCT
GTGAGCTCCTCACACTCGATGTCATGGACGTCTCGGGCGAGCAGCAGCACGGCGTCGCCCATGGCGTCAGCAAGG
TCCGACTGCGGCCCCAATCCCAAGGCGGCGGCGTCATCGACGTCAAGTCTCTGGCACTCCACGACGAAAAGGCCG
ACCACCTCGACCCCAAGTACTGTGGCGAGTGCTACGGAGCGGCGCCACTGGGCACGGCGACGAAGCCCGGCTGCT
GCAACACCTGCGACGAGGTCCGCGAGGCATATGCCGCCCAGGGCTGGGCATTTGGCAGGGGCGAGGGCGTCGAGC
AGTGCGAGCGCGAGCACTACGCTGAGAAGCTCGACGCGCAGAGAGAGGAGGGCTGCCGCATCGAGGGCGCCCTCC
AGGTCAACAAGGTGGTTGGCAACTTTCACCTGGCACCCGGACGCAGCTTCAGCAATGGCAACATTCATGTCCACG
ATCTCAAGAACTACTGGGACACGCCCGACGGAAAGAAGCACGACTTTACCCACACCATCCATCAGCTGCGATTCG
GCCCTCAGCTCCCGGACGACGTCAAGCAGAAGCTGGGAGGCTCCGGGGCGATGCCATGGACCAACCACCACCTCA
ATCCGCTGGATGGGGCCCAGCACGACACCACCGACTCGAACCTCAACTACATGTATTTCGTCAAGATCGTCCCCA
CGTCATACCTGCCCCTTGGCTGGGAGAAGAAGATGCAGCGGCTGCCCGGCGTCATGGACGGCAGCGCCGACGGCA
GCGTCGAGACACACCAGTACTCTGTCACGAGCCACAAGCGGAGCCTCAGCGGCGGTAATGACGCGGCCGAGGGCC
ACGCCGAGCGCCAGCACTCCAAGGGCGGCATACCGGGCGTGTTCTTCTCATATGTAACCCCCCCCCCCCATCTCC
CGAAAACCGTGACGAGCGCACGAAGGCAGCTAACAAGCGGCGCAGGACATTTCTCCGATGAAAGTGATCAACCGC
GAGGAGCAGTCCAAGTCCTTCCTCGGGTTCCTGGCAGGTCTTTGTGCCATTGTCGGTGGCACGCTGACAGTGGCT
GCCGCCGTGGACCGCGGGCTGTTTGAGGGTGCGACGCGATTGAAGAAGATGCGATCGAAAGACCTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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