© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3408 |
| Gene name | |
| Location | scaffold_27:56065..58009 |
| Strand | + |
| Gene length (bp) | 1944 |
| Transcript length (bp) | 1536 |
| Coding sequence length (bp) | 1533 |
| Protein length (aa) | 511 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02133 | Transp_cyt_pur | Permease for cytosine/purines, uracil, thiamine, allantoin | 4.0E-28 | 73 | 473 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|C8V329|FCY2_EMENI | Purine-cytosine permease fcyB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fcyB PE=1 SV=1 | 9 | 495 | 4.0E-69 |
| sp|P17064|FCY2_YEAST | Purine-cytosine permease FCY2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCY2 PE=1 SV=2 | 18 | 502 | 9.0E-68 |
| sp|P40039|FCY21_YEAST | Purine-cytosine permease FCY21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCY21 PE=1 SV=2 | 42 | 510 | 1.0E-67 |
| sp|Q12119|FCY22_YEAST | Purine-cytosine permease FCY22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCY22 PE=3 SV=1 | 42 | 502 | 1.0E-64 |
| sp|P53099|TPN1_YEAST | Vitamin B6 transporter TPN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPN1 PE=1 SV=1 | 34 | 493 | 5.0E-36 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|C8V329|FCY2_EMENI | Purine-cytosine permease fcyB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fcyB PE=1 SV=1 | 9 | 495 | 4.0E-69 |
| sp|P17064|FCY2_YEAST | Purine-cytosine permease FCY2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCY2 PE=1 SV=2 | 18 | 502 | 9.0E-68 |
| sp|P40039|FCY21_YEAST | Purine-cytosine permease FCY21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCY21 PE=1 SV=2 | 42 | 510 | 1.0E-67 |
| sp|Q12119|FCY22_YEAST | Purine-cytosine permease FCY22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCY22 PE=3 SV=1 | 42 | 502 | 1.0E-64 |
| sp|P53099|TPN1_YEAST | Vitamin B6 transporter TPN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPN1 PE=1 SV=1 | 34 | 493 | 5.0E-36 |
| sp|Q874L4|TPN1_YEASX | Vitamin B6 transporter TPN1 OS=Saccharomyces cerevisiae GN=TPN1 PE=3 SV=1 | 34 | 493 | 9.0E-36 |
| sp|P94369|YXLA_BACSU | Putative purine-cytosine permease YxlA OS=Bacillus subtilis (strain 168) GN=yxlA PE=3 SV=1 | 55 | 502 | 3.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 74 | 96 | 22 |
| 2 | 106 | 128 | 22 |
| 3 | 149 | 171 | 22 |
| 4 | 186 | 208 | 22 |
| 5 | 215 | 234 | 19 |
| 6 | 249 | 266 | 17 |
| 7 | 286 | 308 | 22 |
| 8 | 323 | 345 | 22 |
| 9 | 350 | 369 | 19 |
| 10 | 379 | 401 | 22 |
| 11 | 406 | 428 | 22 |
| 12 | 443 | 465 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 3.25 | 0.76 | 5.74 |
| CcL | In ants, during behavior modification | 11.48 | 4.38 | 18.58 |
| CcD | In ants, recently dead | 8.38 | 3.07 | 13.69 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000770 | yes |
| SC16a | CcD | 0.008585 | yes |
| CcL | CcD | 0.339291 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3408 MADDGLRGDETVEGKPAPRQVVGSGSLTGGGVDEAANPSSASSMQRLAKMLRASRVEENGVRPLRVDERDNTRFV SILTVWVSINSNILGITFGMLGPSVYGLGLGHSALVILFFGLLSTLAPAYLAVFGPKTGMRQMIQARYSFGRYLV SVPVLLNLATLTGFTVVICVVGGQCLAAVSDGGLTPNVGIVVIALLSLLVSFAGFAVLHLFESYAFLFALVSIAV TAGVGGHGLSRQSQPEHPPSARQLLNFGMIVAGYQVPWAAIASDLTTYFDPRVPSWRVFHYTYWGLLTPTVLLMG LGAAVAGAVPNNPDWQDRYSKNLVGGALAGMLSGAGGFGKFVLVVLSLTLLGNTCGTCYAITLNFQTLVPWLTAV PRPIFSVVITAIVIPVSMAAATSFLTSLENLVALIGYWSAAFVGIILAEHLVFRRGRFDAYDTAVWDSAARLPPG VAALAAGVLALGLVVPCMDQAWWTGSIARKTGDIGFEIAFVLSALLRSIQLSDIIQSIARA |
| Coding | >Ophio5|3408 ATGGCTGACGATGGCTTGCGCGGCGATGAGACGGTCGAGGGAAAGCCGGCTCCAAGGCAGGTGGTAGGCAGCGGC AGCCTCACCGGCGGCGGCGTCGATGAAGCCGCGAACCCCTCGTCAGCCTCGTCGATGCAGCGGCTGGCCAAGATG CTACGTGCCAGCCGCGTGGAGGAGAACGGCGTCCGGCCGCTGCGCGTCGATGAGCGCGACAATACGCGCTTCGTC AGCATCTTGACCGTCTGGGTCTCCATCAACTCTAACATCCTCGGCATCACGTTTGGCATGCTCGGACCCTCCGTC TACGGCCTCGGCCTCGGCCACTCAGCCCTCGTCATCCTCTTCTTCGGCCTGCTGTCCACCCTTGCGCCCGCTTAC CTGGCCGTCTTCGGGCCCAAGACGGGCATGAGGCAGATGATCCAGGCGCGCTACAGCTTCGGCCGCTATCTCGTC TCCGTCCCTGTGCTGCTCAATCTGGCCACCCTGACCGGCTTCACCGTCGTCATCTGCGTCGTCGGCGGTCAATGC CTCGCAGCCGTGTCCGACGGTGGGCTGACGCCCAACGTGGGCATCGTCGTCATTGCCCTGCTGTCTCTGCTCGTC TCCTTTGCCGGCTTCGCCGTGCTGCACCTCTTCGAGTCGTATGCCTTCCTGTTTGCCCTCGTCAGCATCGCCGTT ACCGCCGGCGTCGGCGGTCACGGCCTCAGCCGCCAGTCTCAGCCCGAACACCCCCCTTCGGCCCGTCAGTTGCTC AACTTTGGCATGATCGTGGCCGGCTACCAGGTCCCCTGGGCGGCCATAGCCAGCGATCTGACGACGTACTTTGAC CCCCGCGTTCCGTCCTGGCGCGTCTTTCACTATACCTACTGGGGGCTCCTGACGCCGACGGTGCTGCTTATGGGG CTCGGCGCCGCCGTTGCCGGAGCCGTTCCCAACAACCCGGACTGGCAGGATAGGTACAGCAAGAACCTCGTGGGC GGCGCCCTGGCCGGCATGTTGTCCGGGGCTGGCGGCTTCGGCAAGTTCGTCCTCGTCGTCCTATCGCTGACGCTG CTTGGAAACACGTGCGGCACCTGCTACGCCATCACGCTGAACTTCCAGACGCTGGTGCCGTGGCTGACCGCGGTG CCGCGTCCCATCTTCTCAGTTGTCATCACCGCCATCGTGATTCCCGTGTCCATGGCTGCGGCCACCAGCTTCTTG ACTAGCCTTGAGAATCTCGTGGCCCTTATTGGCTACTGGTCCGCCGCCTTCGTGGGCATCATCCTCGCTGAGCAT CTCGTCTTCCGCCGCGGCCGCTTCGACGCCTACGACACCGCTGTGTGGGACTCGGCCGCGAGGTTGCCCCCTGGC GTTGCCGCCCTGGCCGCCGGTGTCCTTGCCCTCGGCCTCGTCGTTCCCTGCATGGACCAGGCTTGGTGGACGGGG TCCATCGCCAGGAAAACGGGCGACATTGGCTTCGAGATTGCGTTTGTGCTTAGCGCCCTGCTGCGTTCTATACAA TTGTCCGATATTATCCAAAGCATAGCCCGAGCG |
| Transcript | >Ophio5|3408 ATGGCTGACGATGGCTTGCGCGGCGATGAGACGGTCGAGGGAAAGCCGGCTCCAAGGCAGGTGGTAGGCAGCGGC AGCCTCACCGGCGGCGGCGTCGATGAAGCCGCGAACCCCTCGTCAGCCTCGTCGATGCAGCGGCTGGCCAAGATG CTACGTGCCAGCCGCGTGGAGGAGAACGGCGTCCGGCCGCTGCGCGTCGATGAGCGCGACAATACGCGCTTCGTC AGCATCTTGACCGTCTGGGTCTCCATCAACTCTAACATCCTCGGCATCACGTTTGGCATGCTCGGACCCTCCGTC TACGGCCTCGGCCTCGGCCACTCAGCCCTCGTCATCCTCTTCTTCGGCCTGCTGTCCACCCTTGCGCCCGCTTAC CTGGCCGTCTTCGGGCCCAAGACGGGCATGAGGCAGATGATCCAGGCGCGCTACAGCTTCGGCCGCTATCTCGTC TCCGTCCCTGTGCTGCTCAATCTGGCCACCCTGACCGGCTTCACCGTCGTCATCTGCGTCGTCGGCGGTCAATGC CTCGCAGCCGTGTCCGACGGTGGGCTGACGCCCAACGTGGGCATCGTCGTCATTGCCCTGCTGTCTCTGCTCGTC TCCTTTGCCGGCTTCGCCGTGCTGCACCTCTTCGAGTCGTATGCCTTCCTGTTTGCCCTCGTCAGCATCGCCGTT ACCGCCGGCGTCGGCGGTCACGGCCTCAGCCGCCAGTCTCAGCCCGAACACCCCCCTTCGGCCCGTCAGTTGCTC AACTTTGGCATGATCGTGGCCGGCTACCAGGTCCCCTGGGCGGCCATAGCCAGCGATCTGACGACGTACTTTGAC CCCCGCGTTCCGTCCTGGCGCGTCTTTCACTATACCTACTGGGGGCTCCTGACGCCGACGGTGCTGCTTATGGGG CTCGGCGCCGCCGTTGCCGGAGCCGTTCCCAACAACCCGGACTGGCAGGATAGGTACAGCAAGAACCTCGTGGGC GGCGCCCTGGCCGGCATGTTGTCCGGGGCTGGCGGCTTCGGCAAGTTCGTCCTCGTCGTCCTATCGCTGACGCTG CTTGGAAACACGTGCGGCACCTGCTACGCCATCACGCTGAACTTCCAGACGCTGGTGCCGTGGCTGACCGCGGTG CCGCGTCCCATCTTCTCAGTTGTCATCACCGCCATCGTGATTCCCGTGTCCATGGCTGCGGCCACCAGCTTCTTG ACTAGCCTTGAGAATCTCGTGGCCCTTATTGGCTACTGGTCCGCCGCCTTCGTGGGCATCATCCTCGCTGAGCAT CTCGTCTTCCGCCGCGGCCGCTTCGACGCCTACGACACCGCTGTGTGGGACTCGGCCGCGAGGTTGCCCCCTGGC GTTGCCGCCCTGGCCGCCGGTGTCCTTGCCCTCGGCCTCGTCGTTCCCTGCATGGACCAGGCTTGGTGGACGGGG TCCATCGCCAGGAAAACGGGCGACATTGGCTTCGAGATTGCGTTTGTGCTTAGCGCCCTGCTGCGTTCTATACAA TTGTCCGATATTATCCAAAGCATAGCCCGAGCGTAA |
| Gene | >Ophio5|3408 ATGGCTGACGATGGCTTGCGCGGCGATGAGACGGTCGAGGGAAAGCCGGCTCCAAGGCAGGTGGTAGGCAGCGGC AGCCTCACCGGCGGCGGCGTCGATGAAGCCGCGAACCCCTCGTCAGCCTCGTCGATGCAGCGGCTGGCCAAGATG CTACGTGCCAGCCGCGTGGAGGAGAACGGCGTCCGGCCGCTGCGCGTCGATGAGCGCGACAATACGCGCTTCGTC AGCATCTTGACCGTCTGGGTCTCCATCAACTCTAACATCCTCGGGTGAGGCTGACACCCTCTCGTCTGCCCACGC TGCATTGCTGAGGGGGGGGGAAGCATCACGTTTGGCATGCTCGGACCCTCCGTCTACGGCCTCGGCCTCGGCCAC TCAGCCCTCGTCATCCTCTTCTTCGGCCTGCTGTCCACCCTTGCGCCCGCTTACCTGGCCGTCTTCGGGCCCAAG ACGGGCATGAGGCAGATGATCCAGGCGCGCTACAGCTTCGGGTGTGCCAATCTCCCTATGAACCCTGTGCCAGGT CTGTGCCCCAGATCTGTGCCGGATAGGGTGACGCCGGCTGACCGTCTCTCGCCCTCTGGACGCCCAGCCGCTATC TCGTCTCCGTCCCTGTGCTGCTCAATCTGGCCACCCTGACCGGCTTCACCGTCGTCATCTGCGTCGTCGGCGGTC AATGCCTCGCAGCCGTGTCCGACGGTGGGCTGACGCCCAACGTGGGCATCGTCGTCATTGCCCTGCTGTCTCTGC TCGTCTCCTTTGCCGGCTTCGCCGTGCTGCACCTCTTCGAGTCGTATGCCTTCCTGTTTGCCCTCGTCAGCATCG CCGTTACCGCCGGCGTCGGCGGTCACGGCCTCAGCCGCCAGTCTCAGCCCGAACACCCCCCTTCGGCCCGTCAGT TGCTCAACTTTGGCATGATCGTGGCCGGCTACCAGGTCCCCTGGGCGGCCATAGCCAGCGATCTGACGACGTACT TTGACCCCCGCGTTCCGTCGTCAGTCTTTTCTCCTTTCCTCCTCCCCTGTGGCTCTCCCGTGGCCTTCCCGTGGC CGTCCCGTGGCCTTCCCGTGGCCTTCCCGTGGCCTTCCCGTGGTCCTCCCGTCGCGACGTGGACTGAACTGACGA CCTCCCCAAGCTGGCGCGTCTTTCACTATACCTACTGGGGGCTCCTGACGCCGACGGTGCTGCTTATGGGGCTCG GCGCCGCCGTTGCCGGAGCCGTTCCCAACAACCCGGACTGGCAGGATAGGTACAGCAAGAACCTCGTGGGCGGCG CCCTGGCCGGCATGTTGTCCGGGGCTGGCGGCTTCGGCAAGTTCGTCCTCGTCGTCCTATCGCTGACGCTGCTTG GAAACACGTGCGGCACCTGCTACGCCATCACGCTGAACTTCCAGACGCTGGTGCCGTGGCTGACCGCGGTGCCGC GTCCCATCTTCTCAGTTGTCATCACCGCCATCGTGATTCCCGTGTCCATGGCTGCGGCCACCAGCTTCTTGACTA GCCTTGAGAATCTCGTGGCCCTTATTGGCTACTGGTCCGCCGCCTTCGTGGGCATCATCCTCGCTGAGCATCTCG TCTTCCGCCGCGGCCGCTTCGACGCCTACGACACCGCTGTGTGGGACTCGGCCGCGAGGTTGCCCCCTGGCGTTG CCGCCCTGGCCGCCGGTGTCCTTGCCCTCGGCCTCGTCGTTCCCTGCATGGACCAGGCTTGGTGGACGGGGTCCA TCGCCAGGAAAACGGGCGACATTGGCTTCGAGATTGCGTTTGTGCTTAGCGCCCTGCTGTACGTGCCCTTTCGCC ACCTCGAGAGGCGTCTAGCCGGCCGGTGACGAGGAGGCGTTCTATACAATTGTGAGAAAGCCAAAGTCTGTGCAA ACACACGTCGTCATCGTCGGCTTACATCTCACAAGGTCCGATATTATCCAAAGCATAGCCCGAGCGTAA |