Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|3397
Gene name
Location	scaffold_27:32914..34038
Strand	-
Gene length (bp)	1124
Transcript length (bp)	939
Coding sequence length (bp)	936
Protein length (aa)	312

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13460	NAD_binding_10	NAD(P)H-binding	1.2E-06	14	153
PF02254	TrkA_N	TrkA-N domain	5.0E-06	8	82

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|E1U332\|ALL12_OLEEU	Isoflavone reductase-like protein OS=Olea europaea PE=1 SV=1	1	250	1.0E-08
sp\|P52578\|IFRH_SOLTU	Isoflavone reductase homolog OS=Solanum tuberosum PE=2 SV=1	1	251	2.0E-08
sp\|O65679\|PILR3_ARATH	Probable pinoresinol-lariciresinol reductase 3 OS=Arabidopsis thaliana GN=PLR3 PE=3 SV=2	6	269	2.0E-07
sp\|P52576\|IFR_PEA	Isoflavone reductase OS=Pisum sativum GN=IFR PE=2 SV=1	1	265	1.0E-06

GO

GO Term	Description	Terminal node
GO:0006813	potassium ion transport	Yes
GO:0006812	cation transport	No
GO:0006811	ion transport	No
GO:0051234	establishment of localization	No
GO:0006810	transport	No
GO:0030001	metal ion transport	No
GO:0051179	localization	No
GO:0008150	biological_process	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	1.22	0.00	2.56
CcL	In ants, during behavior modification	224.81	33.07	416.55
CcD	In ants, recently dead	66.75	35.00	98.50

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.000286	yes
CcL	CcD	0.001217	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|3397 MADTQQIIALCSVGNLGKYLCDELLADGRYKFFVISRQSNKAAFFQDRNIDVRTSDYSKESILEILNQTNASALI SFNNSDGQTFVDVHRAFLDACRLSSNCKRFIPSEFAGNIDDFPLSPSYFEESRVPFRKILEKEEEVEWTIFNNGW LMDYFLTADKSYMPSIPKEFPVDPNGWRACIRGTGEQVQSFTSGRDVAKALIMLLDAPEWERTTYVTGQWSTFNE MVKSMEVFYGRPMEKTYRSEEDIHRDTLLPPTAENYEALYLASVEEMMLTASGACPRDKTMRQREKFFRGLNFIT LEELLLQSQSKI
Coding	>Ophio5\|3397 ATGGCTGATACACAACAAATCATTGCTCTATGCTCTGTAGGAAACCTCGGCAAGTACCTCTGCGATGAATTGCTC GCCGACGGCCGCTACAAGTTTTTCGTCATCTCCCGTCAATCCAACAAAGCGGCGTTTTTTCAGGACCGCAACATA GATGTGCGCACGAGCGACTACAGCAAGGAATCGATTCTGGAGATTTTGAACCAGACTAATGCCAGTGCCCTGATA TCCTTCAACAACAGCGATGGCCAAACCTTTGTTGATGTGCACCGCGCCTTTTTGGACGCTTGTCGCTTGTCATCG AATTGCAAGCGATTCATTCCCTCCGAATTCGCCGGCAACATCGATGATTTTCCGCTTTCTCCGAGCTACTTTGAG GAATCAAGAGTACCGTTTCGGAAAATTCTTGAAAAAGAGGAGGAAGTCGAGTGGACAATCTTTAACAACGGCTGG CTGATGGATTACTTCTTGACCGCTGACAAGTCATACATGCCCTCGATCCCAAAGGAATTCCCAGTTGACCCAAAT GGCTGGAGGGCGTGTATTAGGGGAACCGGAGAACAGGTGCAATCCTTTACAAGCGGTCGAGATGTGGCCAAGGCG CTCATAATGCTGCTCGACGCGCCAGAATGGGAACGCACAACTTATGTCACAGGCCAGTGGTCTACATTCAATGAA ATGGTCAAGTCTATGGAAGTGTTTTATGGCCGACCGATGGAGAAGACATACAGGTCGGAAGAGGACATTCATCGC GATACTTTGCTGCCCCCGACGGCGGAAAACTATGAAGCTCTCTACCTCGCAAGTGTAGAGGAGATGATGCTTACA GCCTCGGGCGCATGTCCTCGGGACAAGACCATGCGGCAGAGAGAAAAATTCTTTCGTGGACTCAACTTCATCACC CTGGAGGAGCTTTTATTACAGTCGCAGTCCAAGATT
Transcript	>Ophio5\|3397 ATGGCTGATACACAACAAATCATTGCTCTATGCTCTGTAGGAAACCTCGGCAAGTACCTCTGCGATGAATTGCTC GCCGACGGCCGCTACAAGTTTTTCGTCATCTCCCGTCAATCCAACAAAGCGGCGTTTTTTCAGGACCGCAACATA GATGTGCGCACGAGCGACTACAGCAAGGAATCGATTCTGGAGATTTTGAACCAGACTAATGCCAGTGCCCTGATA TCCTTCAACAACAGCGATGGCCAAACCTTTGTTGATGTGCACCGCGCCTTTTTGGACGCTTGTCGCTTGTCATCG AATTGCAAGCGATTCATTCCCTCCGAATTCGCCGGCAACATCGATGATTTTCCGCTTTCTCCGAGCTACTTTGAG GAATCAAGAGTACCGTTTCGGAAAATTCTTGAAAAAGAGGAGGAAGTCGAGTGGACAATCTTTAACAACGGCTGG CTGATGGATTACTTCTTGACCGCTGACAAGTCATACATGCCCTCGATCCCAAAGGAATTCCCAGTTGACCCAAAT GGCTGGAGGGCGTGTATTAGGGGAACCGGAGAACAGGTGCAATCCTTTACAAGCGGTCGAGATGTGGCCAAGGCG CTCATAATGCTGCTCGACGCGCCAGAATGGGAACGCACAACTTATGTCACAGGCCAGTGGTCTACATTCAATGAA ATGGTCAAGTCTATGGAAGTGTTTTATGGCCGACCGATGGAGAAGACATACAGGTCGGAAGAGGACATTCATCGC GATACTTTGCTGCCCCCGACGGCGGAAAACTATGAAGCTCTCTACCTCGCAAGTGTAGAGGAGATGATGCTTACA GCCTCGGGCGCATGTCCTCGGGACAAGACCATGCGGCAGAGAGAAAAATTCTTTCGTGGACTCAACTTCATCACC CTGGAGGAGCTTTTATTACAGTCGCAGTCCAAGATTTAG
Gene	>Ophio5\|3397 ATGGCTGATACACAACAAATCATTGCTCTATGCTCTGTAGGAAACCTCGGCAAGTACCTCTGCGATGAATTGCTC GCCGACGGCCGCTACAAGTTTTTCGTCATCTCCCGTCAAGTGAGTCTCAGTTATCTCAGTTATAGACATATAACA GGTTTTTGGTTGACCTCTTTCTAACGTGATCAAGTCCAACAAAGCGGCGTTTTTTCAGGACCGCAACATAGATGT GCGCACGAGCGACTACAGCAAGGAATCGATTCTGGAGATTTTGAACCAGACTAATGCCAGTGCCCTGATATCCTT CAACAACAGCGATGGCCAAACCTTTGTTGATGTGCACCGCGCCTTTTTGGACGCTTGTCGCTTGTCATCGAATTG CAAGCGATTCATTCCCTCCGAATTCGCCGGCAACATCGATGATTTTCCGCTTTCTCCGAGCTACTTTGAGGAATC AAGAGTACCGTTTCGGAAAATTCTTGAAAAAGAGGAGGAAGTCGAGTGGACAATCTTTAACAACGGCTGGCTGAT GGATTACTTCTTGACCGCTGACAAGTCATACATGCCCTCGATCCCAAAGGAATTCCCAGTTGACCCAAATGGCTG GAGGGCGTGTATTAGGGGAACCGGAGAACAGGTGCAATCCTTTACAAGCGGTCGAGATGTGGCCAAGGCGCTCAT AATGCTGCTCGACGCGCCAGAATGGGTCAGTCACATACTCGAAGACGATAGTGTGTGTCTACGTCTGCTTAACGT CTACTTACCAGGAACGCACAACTTATGTCACAGGCCAGTGGTCTACATTCAATGAAATGGTCAAGTCTATGGAAG TGTTTTATGGTTTGTCTTAGACTCCCATTTCGGGAAAGACTGCTTGGCTAAGACGAGTTCTAGGCCGACCGATGG AGAAGACATACAGGTCGGAAGAGGACATTCATCGCGATACTTTGCTGCCCCCGACGGCGGAAAACTATGAAGCTC TCTACCTCGCAAGTGTAGAGGAGATGATGCTTACAGCCTCGGGCGCATGTCCTCGGGACAAGACCATGCGGCAGA GAGAAAAATTCTTTCGTGGACTCAACTTCATCACCCTGGAGGAGCTTTTATTACAGTCGCAGTCCAAGATTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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