Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3362
Gene name
Locationscaffold_267:15837..16444
Strand-
Gene length (bp)607
Transcript length (bp)495
Coding sequence length (bp)492
Protein length (aa) 164

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 25 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 5.74 0.49 10.99
CcL In ants, during behavior modification 8.99 1.28 16.69
CcD In ants, recently dead 6.11 0.56 11.66

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.350664 no
SC16a CcD 0.914615 no
CcL CcD 0.423769 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3362
MRLSLLTAISYGLVLVSFSGSVLSQGMCKCCPGDDCWPDREEWARLNQTDGGRLVATAPVGSPAGNFDVVVSVTV
KAHSDARVAGANFQVINPSWRDRDDGNLARFDSLHTAFPALVNAGLTVVYYAHKTMFGGLTLTGYNMTLAKLRRT
LAPLEAAVKSKGFI
Coding >Ophio5|3362
ATGAGACTCTCCCTATTGACCGCCATATCGTATGGCTTGGTGCTCGTCAGCTTCAGCGGCTCCGTACTGAGCCAG
GGCATGTGCAAATGCTGCCCCGGAGACGACTGCTGGCCGGATAGGGAGGAATGGGCGCGCCTCAACCAGACAGAT
GGAGGCCGGCTCGTGGCCACGGCACCGGTGGGCTCGCCCGCAGGCAACTTTGACGTCGTCGTCTCCGTCACCGTC
AAGGCCCATTCGGACGCCCGCGTTGCTGGTGCCAATTTTCAAGTCATAAACCCATCATGGCGTGACAGAGACGAT
GGGAATCTGGCCAGATTTGACAGCCTTCACACAGCCTTTCCCGCCCTTGTTAATGCCGGCTTGACCGTCGTCTAC
TATGCACACAAGACGATGTTCGGCGGCCTCACCTTGACGGGCTACAACATGACCCTGGCCAAGCTCCGGCGCACC
CTAGCGCCGCTTGAGGCTGCCGTCAAGAGCAAGGGCTTCATC
Transcript >Ophio5|3362
ATGAGACTCTCCCTATTGACCGCCATATCGTATGGCTTGGTGCTCGTCAGCTTCAGCGGCTCCGTACTGAGCCAG
GGCATGTGCAAATGCTGCCCCGGAGACGACTGCTGGCCGGATAGGGAGGAATGGGCGCGCCTCAACCAGACAGAT
GGAGGCCGGCTCGTGGCCACGGCACCGGTGGGCTCGCCCGCAGGCAACTTTGACGTCGTCGTCTCCGTCACCGTC
AAGGCCCATTCGGACGCCCGCGTTGCTGGTGCCAATTTTCAAGTCATAAACCCATCATGGCGTGACAGAGACGAT
GGGAATCTGGCCAGATTTGACAGCCTTCACACAGCCTTTCCCGCCCTTGTTAATGCCGGCTTGACCGTCGTCTAC
TATGCACACAAGACGATGTTCGGCGGCCTCACCTTGACGGGCTACAACATGACCCTGGCCAAGCTCCGGCGCACC
CTAGCGCCGCTTGAGGCTGCCGTCAAGAGCAAGGGCTTCATCTAG
Gene >Ophio5|3362
ATGAGACTCTCCCTATTGACCGCCATATCGTATGGCTTGGTGCTCGTCAGCTTCAGCGGCTCCGTACTGAGCCAG
GGCATGTGCAAATGCTGCCCCGGAGACGACTGCTGGCCGGATAGGGAGGAATGGGCGCGCCTCAACCAGACAGAT
GGAGGCCGGCTCGTGGCCACGGCACCGGTGGGCTCGCCGTCTGGCGTTTAACACGCTGAGCTTTGATGTGGTGAC
GGCTTCGGGCCAGCTCGTGACGGCCTCGCCGTCGAACCAGCATCGCGACCTCTACTGAGCCTTGAGCGGCGGCAG
CGCAGGCAACTTTGACGTCGTCGTCTCCGTCACCGTCAAGGCCCATTCGGACGCCCGCGTTGCTGGTGCCAATTT
TCAAGTCATAAACCCATCATGGCGTGACAGAGACGATGGGAATCTGGCCAGATTTGACAGCCTTCACACAGCCTT
TCCCGCCCTTGTTAATGCCGGCTTGACCGTCGTCTACTATGCACACAAGACGATGTTCGGCGGCCTCACCTTGAC
GGGCTACAACATGACCCTGGCCAAGCTCCGGCGCACCCTAGCGCCGCTTGAGGCTGCCGTCAAGAGCAAGGGCTT
CATCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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