Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|3341
Gene name
Location	scaffold_265:8891..9494
Strand	-
Gene length (bp)	603
Transcript length (bp)	603
Coding sequence length (bp)	600
Protein length (aa)	200

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 20	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	9.04	1.98	16.10
CcL	In ants, during behavior modification	62.87	18.94	106.80
CcD	In ants, recently dead	22.90	7.68	38.12

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.010908	yes
CcL	CcD	0.000997	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|3341 MKWLAVLSVALSGAGLLEASPVVDKLDREAMRQAHQRDNTATRAKTGVRIATADGRLCLSVDRLSGDSRANMTPV QLESCRKTRRRQRWDVITSGIHNNQPGQALIVSAATQACLNVDRREPMDQRVFLYSCGGRADGSGTVTDSQLFAY QDGVGPRKFRPQNSVGWCLTAGAETLGIQPCNKNGTATQEARQRFIFLHE
Coding	>Ophio5\|3341 ATGAAGTGGCTCGCCGTCCTCTCCGTCGCCCTCAGCGGTGCAGGTCTCCTCGAAGCCTCTCCCGTTGTCGACAAG CTCGACCGCGAAGCCATGAGGCAAGCTCATCAGCGCGACAACACGGCAACCCGGGCCAAAACCGGCGTACGCATT GCCACGGCCGATGGCAGGCTCTGCCTCTCGGTAGATCGACTCTCGGGCGACTCGCGCGCCAACATGACTCCAGTG CAGCTCGAGTCCTGCCGCAAGACTCGGCGTCGTCAGCGTTGGGATGTCATCACTTCCGGCATACACAATAACCAG CCGGGCCAGGCGCTCATCGTCAGCGCAGCCACGCAGGCTTGTCTCAACGTTGATCGTCGCGAGCCGATGGACCAA CGCGTCTTTCTCTATTCGTGCGGTGGACGCGCTGATGGTTCTGGCACCGTTACCGACTCGCAACTGTTTGCATAT CAAGATGGTGTCGGCCCTCGGAAATTCCGGCCCCAGAACAGTGTCGGTTGGTGCTTGACTGCTGGTGCTGAGACG CTTGGTATTCAGCCCTGCAATAAAAATGGCACGGCGACTCAAGAGGCGCGGCAAAGGTTCATCTTCCTACATGAG
Transcript	>Ophio5\|3341 ATGAAGTGGCTCGCCGTCCTCTCCGTCGCCCTCAGCGGTGCAGGTCTCCTCGAAGCCTCTCCCGTTGTCGACAAG CTCGACCGCGAAGCCATGAGGCAAGCTCATCAGCGCGACAACACGGCAACCCGGGCCAAAACCGGCGTACGCATT GCCACGGCCGATGGCAGGCTCTGCCTCTCGGTAGATCGACTCTCGGGCGACTCGCGCGCCAACATGACTCCAGTG CAGCTCGAGTCCTGCCGCAAGACTCGGCGTCGTCAGCGTTGGGATGTCATCACTTCCGGCATACACAATAACCAG CCGGGCCAGGCGCTCATCGTCAGCGCAGCCACGCAGGCTTGTCTCAACGTTGATCGTCGCGAGCCGATGGACCAA CGCGTCTTTCTCTATTCGTGCGGTGGACGCGCTGATGGTTCTGGCACCGTTACCGACTCGCAACTGTTTGCATAT CAAGATGGTGTCGGCCCTCGGAAATTCCGGCCCCAGAACAGTGTCGGTTGGTGCTTGACTGCTGGTGCTGAGACG CTTGGTATTCAGCCCTGCAATAAAAATGGCACGGCGACTCAAGAGGCGCGGCAAAGGTTCATCTTCCTACATGAG TGA
Gene	>Ophio5\|3341 ATGAAGTGGCTCGCCGTCCTCTCCGTCGCCCTCAGCGGTGCAGGTCTCCTCGAAGCCTCTCCCGTTGTCGACAAG CTCGACCGCGAAGCCATGAGGCAAGCTCATCAGCGCGACAACACGGCAACCCGGGCCAAAACCGGCGTACGCATT GCCACGGCCGATGGCAGGCTCTGCCTCTCGGTAGATCGACTCTCGGGCGACTCGCGCGCCAACATGACTCCAGTG CAGCTCGAGTCCTGCCGCAAGACTCGGCGTCGTCAGCGTTGGGATGTCATCACTTCCGGCATACACAATAACCAG CCGGGCCAGGCGCTCATCGTCAGCGCAGCCACGCAGGCTTGTCTCAACGTTGATCGTCGCGAGCCGATGGACCAA CGCGTCTTTCTCTATTCGTGCGGTGGACGCGCTGATGGTTCTGGCACCGTTACCGACTCGCAACTGTTTGCATAT CAAGATGGTGTCGGCCCTCGGAAATTCCGGCCCCAGAACAGTGTCGGTTGGTGCTTGACTGCTGGTGCTGAGACG CTTGGTATTCAGCCCTGCAATAAAAATGGCACGGCGACTCAAGAGGCGCGGCAAAGGTTCATCTTCCTACATGAG TGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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