© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3341 |
| Gene name | |
| Location | scaffold_265:8891..9494 |
| Strand | - |
| Gene length (bp) | 603 |
| Transcript length (bp) | 603 |
| Coding sequence length (bp) | 600 |
| Protein length (aa) | 200 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1436 | 0.1049 | 0.9465 | 0.0752 | 0.2466 | 0.0239 | 0.117 | 0.1367 | 0.1694 | 0.0082 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 19 | 0.999475 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 9.04 | 1.98 | 16.10 |
| CcL | In ants, during behavior modification | 62.87 | 18.94 | 106.80 |
| CcD | In ants, recently dead | 22.90 | 7.68 | 38.12 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.010908 | yes |
| CcL | CcD | 0.000997 | yes |
| Orthofinder run ID | 4 |
| Orthogroup | 15801 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps kimflemingae | Ophio5|3341 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3341 MKWLAVLSVALSGAGLLEASPVVDKLDREAMRQAHQRDNTATRAKTGVRIATADGRLCLSVDRLSGDSRANMTPV QLESCRKTRRRQRWDVITSGIHNNQPGQALIVSAATQACLNVDRREPMDQRVFLYSCGGRADGSGTVTDSQLFAY QDGVGPRKFRPQNSVGWCLTAGAETLGIQPCNKNGTATQEARQRFIFLHE |
| Coding | >Ophio5|3341 ATGAAGTGGCTCGCCGTCCTCTCCGTCGCCCTCAGCGGTGCAGGTCTCCTCGAAGCCTCTCCCGTTGTCGACAAG CTCGACCGCGAAGCCATGAGGCAAGCTCATCAGCGCGACAACACGGCAACCCGGGCCAAAACCGGCGTACGCATT GCCACGGCCGATGGCAGGCTCTGCCTCTCGGTAGATCGACTCTCGGGCGACTCGCGCGCCAACATGACTCCAGTG CAGCTCGAGTCCTGCCGCAAGACTCGGCGTCGTCAGCGTTGGGATGTCATCACTTCCGGCATACACAATAACCAG CCGGGCCAGGCGCTCATCGTCAGCGCAGCCACGCAGGCTTGTCTCAACGTTGATCGTCGCGAGCCGATGGACCAA CGCGTCTTTCTCTATTCGTGCGGTGGACGCGCTGATGGTTCTGGCACCGTTACCGACTCGCAACTGTTTGCATAT CAAGATGGTGTCGGCCCTCGGAAATTCCGGCCCCAGAACAGTGTCGGTTGGTGCTTGACTGCTGGTGCTGAGACG CTTGGTATTCAGCCCTGCAATAAAAATGGCACGGCGACTCAAGAGGCGCGGCAAAGGTTCATCTTCCTACATGAG |
| Transcript | >Ophio5|3341 ATGAAGTGGCTCGCCGTCCTCTCCGTCGCCCTCAGCGGTGCAGGTCTCCTCGAAGCCTCTCCCGTTGTCGACAAG CTCGACCGCGAAGCCATGAGGCAAGCTCATCAGCGCGACAACACGGCAACCCGGGCCAAAACCGGCGTACGCATT GCCACGGCCGATGGCAGGCTCTGCCTCTCGGTAGATCGACTCTCGGGCGACTCGCGCGCCAACATGACTCCAGTG CAGCTCGAGTCCTGCCGCAAGACTCGGCGTCGTCAGCGTTGGGATGTCATCACTTCCGGCATACACAATAACCAG CCGGGCCAGGCGCTCATCGTCAGCGCAGCCACGCAGGCTTGTCTCAACGTTGATCGTCGCGAGCCGATGGACCAA CGCGTCTTTCTCTATTCGTGCGGTGGACGCGCTGATGGTTCTGGCACCGTTACCGACTCGCAACTGTTTGCATAT CAAGATGGTGTCGGCCCTCGGAAATTCCGGCCCCAGAACAGTGTCGGTTGGTGCTTGACTGCTGGTGCTGAGACG CTTGGTATTCAGCCCTGCAATAAAAATGGCACGGCGACTCAAGAGGCGCGGCAAAGGTTCATCTTCCTACATGAG TGA |
| Gene | >Ophio5|3341 ATGAAGTGGCTCGCCGTCCTCTCCGTCGCCCTCAGCGGTGCAGGTCTCCTCGAAGCCTCTCCCGTTGTCGACAAG CTCGACCGCGAAGCCATGAGGCAAGCTCATCAGCGCGACAACACGGCAACCCGGGCCAAAACCGGCGTACGCATT GCCACGGCCGATGGCAGGCTCTGCCTCTCGGTAGATCGACTCTCGGGCGACTCGCGCGCCAACATGACTCCAGTG CAGCTCGAGTCCTGCCGCAAGACTCGGCGTCGTCAGCGTTGGGATGTCATCACTTCCGGCATACACAATAACCAG CCGGGCCAGGCGCTCATCGTCAGCGCAGCCACGCAGGCTTGTCTCAACGTTGATCGTCGCGAGCCGATGGACCAA CGCGTCTTTCTCTATTCGTGCGGTGGACGCGCTGATGGTTCTGGCACCGTTACCGACTCGCAACTGTTTGCATAT CAAGATGGTGTCGGCCCTCGGAAATTCCGGCCCCAGAACAGTGTCGGTTGGTGCTTGACTGCTGGTGCTGAGACG CTTGGTATTCAGCCCTGCAATAAAAATGGCACGGCGACTCAAGAGGCGCGGCAAAGGTTCATCTTCCTACATGAG TGA |