Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3341
Gene name
Locationscaffold_265:8891..9494
Strand-
Gene length (bp)603
Transcript length (bp)603
Coding sequence length (bp)600
Protein length (aa) 200

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 9.04 1.98 16.10
CcL In ants, during behavior modification 62.87 18.94 106.80
CcD In ants, recently dead 22.90 7.68 38.12

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.010908 yes
CcL CcD 0.000997 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3341
MKWLAVLSVALSGAGLLEASPVVDKLDREAMRQAHQRDNTATRAKTGVRIATADGRLCLSVDRLSGDSRANMTPV
QLESCRKTRRRQRWDVITSGIHNNQPGQALIVSAATQACLNVDRREPMDQRVFLYSCGGRADGSGTVTDSQLFAY
QDGVGPRKFRPQNSVGWCLTAGAETLGIQPCNKNGTATQEARQRFIFLHE
Coding >Ophio5|3341
ATGAAGTGGCTCGCCGTCCTCTCCGTCGCCCTCAGCGGTGCAGGTCTCCTCGAAGCCTCTCCCGTTGTCGACAAG
CTCGACCGCGAAGCCATGAGGCAAGCTCATCAGCGCGACAACACGGCAACCCGGGCCAAAACCGGCGTACGCATT
GCCACGGCCGATGGCAGGCTCTGCCTCTCGGTAGATCGACTCTCGGGCGACTCGCGCGCCAACATGACTCCAGTG
CAGCTCGAGTCCTGCCGCAAGACTCGGCGTCGTCAGCGTTGGGATGTCATCACTTCCGGCATACACAATAACCAG
CCGGGCCAGGCGCTCATCGTCAGCGCAGCCACGCAGGCTTGTCTCAACGTTGATCGTCGCGAGCCGATGGACCAA
CGCGTCTTTCTCTATTCGTGCGGTGGACGCGCTGATGGTTCTGGCACCGTTACCGACTCGCAACTGTTTGCATAT
CAAGATGGTGTCGGCCCTCGGAAATTCCGGCCCCAGAACAGTGTCGGTTGGTGCTTGACTGCTGGTGCTGAGACG
CTTGGTATTCAGCCCTGCAATAAAAATGGCACGGCGACTCAAGAGGCGCGGCAAAGGTTCATCTTCCTACATGAG
Transcript >Ophio5|3341
ATGAAGTGGCTCGCCGTCCTCTCCGTCGCCCTCAGCGGTGCAGGTCTCCTCGAAGCCTCTCCCGTTGTCGACAAG
CTCGACCGCGAAGCCATGAGGCAAGCTCATCAGCGCGACAACACGGCAACCCGGGCCAAAACCGGCGTACGCATT
GCCACGGCCGATGGCAGGCTCTGCCTCTCGGTAGATCGACTCTCGGGCGACTCGCGCGCCAACATGACTCCAGTG
CAGCTCGAGTCCTGCCGCAAGACTCGGCGTCGTCAGCGTTGGGATGTCATCACTTCCGGCATACACAATAACCAG
CCGGGCCAGGCGCTCATCGTCAGCGCAGCCACGCAGGCTTGTCTCAACGTTGATCGTCGCGAGCCGATGGACCAA
CGCGTCTTTCTCTATTCGTGCGGTGGACGCGCTGATGGTTCTGGCACCGTTACCGACTCGCAACTGTTTGCATAT
CAAGATGGTGTCGGCCCTCGGAAATTCCGGCCCCAGAACAGTGTCGGTTGGTGCTTGACTGCTGGTGCTGAGACG
CTTGGTATTCAGCCCTGCAATAAAAATGGCACGGCGACTCAAGAGGCGCGGCAAAGGTTCATCTTCCTACATGAG
TGA
Gene >Ophio5|3341
ATGAAGTGGCTCGCCGTCCTCTCCGTCGCCCTCAGCGGTGCAGGTCTCCTCGAAGCCTCTCCCGTTGTCGACAAG
CTCGACCGCGAAGCCATGAGGCAAGCTCATCAGCGCGACAACACGGCAACCCGGGCCAAAACCGGCGTACGCATT
GCCACGGCCGATGGCAGGCTCTGCCTCTCGGTAGATCGACTCTCGGGCGACTCGCGCGCCAACATGACTCCAGTG
CAGCTCGAGTCCTGCCGCAAGACTCGGCGTCGTCAGCGTTGGGATGTCATCACTTCCGGCATACACAATAACCAG
CCGGGCCAGGCGCTCATCGTCAGCGCAGCCACGCAGGCTTGTCTCAACGTTGATCGTCGCGAGCCGATGGACCAA
CGCGTCTTTCTCTATTCGTGCGGTGGACGCGCTGATGGTTCTGGCACCGTTACCGACTCGCAACTGTTTGCATAT
CAAGATGGTGTCGGCCCTCGGAAATTCCGGCCCCAGAACAGTGTCGGTTGGTGCTTGACTGCTGGTGCTGAGACG
CTTGGTATTCAGCCCTGCAATAAAAATGGCACGGCGACTCAAGAGGCGCGGCAAAGGTTCATCTTCCTACATGAG
TGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail