© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3310 |
| Gene name | |
| Location | scaffold_262:3463..4133 |
| Strand | - |
| Gene length (bp) | 670 |
| Transcript length (bp) | 528 |
| Coding sequence length (bp) | 525 |
| Protein length (aa) | 175 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17921 | Integrase_H2C2 | Integrase zinc binding domain | 1.4E-13 | 82 | 133 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 4.00 | 0.21 | 7.79 |
| CcL | In ants, during behavior modification | 9.20 | 0.69 | 17.71 |
| CcD | In ants, recently dead | 5.64 | 0.62 | 10.66 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.090445 | no |
| SC16a | CcD | 0.490617 | no |
| CcL | CcD | 0.309918 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3310 MPQQQDMNHKLTGKAFISAIDAKSFFHQSLVHEDDEEKFTVISHRDVDLRAYLRAGLRRIGLPSGGSQQGEINSR DWSSTTQNQRRALVTKFHSQMGHKGRRVTFNYTSERYWWPKVWNDVCEATAACPVCQNLAPQRLRRCSQGDDTTW SRRDTNTNDASEGAGINLESEESRA |
| Coding | >Ophio5|3310 ATGCCACAGCAGCAGGACATGAATCACAAGCTCACCGGCAAGGCATTCATTTCCGCCATCGACGCCAAATCATTC TTCCACCAGTCCCTCGTCCACGAGGACGATGAGGAGAAATTCACCGTCATCAGCCATCGGGATGTCGACCTCCGC GCGTATTTGCGTGCCGGGCTTCGAAGAATTGGTCTGCCCTCTGGAGGAAGCCAGCAAGGGGAGATCAACAGCCGA GACTGGTCATCAACGACCCAAAACCAACGACGAGCGTTGGTGACAAAATTCCACTCTCAGATGGGCCATAAGGGA CGGCGAGTGACGTTTAACTACACCTCTGAGCGCTACTGGTGGCCAAAGGTGTGGAACGATGTCTGCGAAGCAACT GCCGCGTGCCCCGTCTGTCAGAACCTTGCGCCGCAGCGATTGAGGCGATGCTCGCAAGGAGACGATACGACATGG TCGCGCCGGGATACCAATACGAATGACGCATCAGAAGGAGCCGGCATCAATCTCGAATCTGAAGAGAGCCGTGCT |
| Transcript | >Ophio5|3310 ATGCCACAGCAGCAGGACATGAATCACAAGCTCACCGGCAAGGCATTCATTTCCGCCATCGACGCCAAATCATTC TTCCACCAGTCCCTCGTCCACGAGGACGATGAGGAGAAATTCACCGTCATCAGCCATCGGGATGTCGACCTCCGC GCGTATTTGCGTGCCGGGCTTCGAAGAATTGGTCTGCCCTCTGGAGGAAGCCAGCAAGGGGAGATCAACAGCCGA GACTGGTCATCAACGACCCAAAACCAACGACGAGCGTTGGTGACAAAATTCCACTCTCAGATGGGCCATAAGGGA CGGCGAGTGACGTTTAACTACACCTCTGAGCGCTACTGGTGGCCAAAGGTGTGGAACGATGTCTGCGAAGCAACT GCCGCGTGCCCCGTCTGTCAGAACCTTGCGCCGCAGCGATTGAGGCGATGCTCGCAAGGAGACGATACGACATGG TCGCGCCGGGATACCAATACGAATGACGCATCAGAAGGAGCCGGCATCAATCTCGAATCTGAAGAGAGCCGTGCT TGA |
| Gene | >Ophio5|3310 ATGCCACAGCAGCAGGACATGAATCACAAGCTCACCGGCAAGGCATTCATTTCCGCCATCGACGCCAAATCATTC TTCCACCAGTCCCTCGTCCACGAGGACGATGAGGAGAAATTCACCGTCATCAGCCATCGGGATGTCGACCTCCGC GCGTATTTGCGTGCCGGGCTTCGAAGAATTGGTCTGCCGTGGGTGCGACGCCTTTAACGCCTACAATATTCCAGC TTTTTTTTATTATACACGGCTTCGTGCCGATCATTTGATAGGACCCCGAAAGAGTTCAAGGCCTTTAAGAAAAAC AGCTTAAAGTACGACTTCCTAGACCAAAAGCTCTGGAGGAAGCCAGCAAGGGGAGATCAACAGCCGAGACTGGTC ATCAACGACCCAAAACCAACGACGAGCGTTGGTGACAAAATTCCACTCTCAGATGGGCCATAAGGGACGGCGAGT GACGTTTAACTACACCTCTGAGCGCTACTGGTGGCCAAAGGTGTGGAACGATGTCTGCGAAGCAACTGCCGCGTG CCCCGTCTGTCAGAACCTTGCGCCGCAGCGATTGAGGCGATGCTCGCAAGGAGACGATACGACATGGTCGCGCCG GGATACCAATACGAATGACGCATCAGAAGGAGCCGGCATCAATCTCGAATCTGAAGAGAGCCGTGCTTGA |