Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|3310
Gene name
Location	scaffold_262:3463..4133
Strand	-
Gene length (bp)	670
Transcript length (bp)	528
Coding sequence length (bp)	525
Protein length (aa)	175

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF17921	Integrase_H2C2	Integrase zinc binding domain	1.4E-13	82	133

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 23	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|3310 MPQQQDMNHKLTGKAFISAIDAKSFFHQSLVHEDDEEKFTVISHRDVDLRAYLRAGLRRIGLPSGGSQQGEINSR DWSSTTQNQRRALVTKFHSQMGHKGRRVTFNYTSERYWWPKVWNDVCEATAACPVCQNLAPQRLRRCSQGDDTTW SRRDTNTNDASEGAGINLESEESRA
Coding	>Ophio5\|3310 ATGCCACAGCAGCAGGACATGAATCACAAGCTCACCGGCAAGGCATTCATTTCCGCCATCGACGCCAAATCATTC TTCCACCAGTCCCTCGTCCACGAGGACGATGAGGAGAAATTCACCGTCATCAGCCATCGGGATGTCGACCTCCGC GCGTATTTGCGTGCCGGGCTTCGAAGAATTGGTCTGCCCTCTGGAGGAAGCCAGCAAGGGGAGATCAACAGCCGA GACTGGTCATCAACGACCCAAAACCAACGACGAGCGTTGGTGACAAAATTCCACTCTCAGATGGGCCATAAGGGA CGGCGAGTGACGTTTAACTACACCTCTGAGCGCTACTGGTGGCCAAAGGTGTGGAACGATGTCTGCGAAGCAACT GCCGCGTGCCCCGTCTGTCAGAACCTTGCGCCGCAGCGATTGAGGCGATGCTCGCAAGGAGACGATACGACATGG TCGCGCCGGGATACCAATACGAATGACGCATCAGAAGGAGCCGGCATCAATCTCGAATCTGAAGAGAGCCGTGCT
Transcript	>Ophio5\|3310 ATGCCACAGCAGCAGGACATGAATCACAAGCTCACCGGCAAGGCATTCATTTCCGCCATCGACGCCAAATCATTC TTCCACCAGTCCCTCGTCCACGAGGACGATGAGGAGAAATTCACCGTCATCAGCCATCGGGATGTCGACCTCCGC GCGTATTTGCGTGCCGGGCTTCGAAGAATTGGTCTGCCCTCTGGAGGAAGCCAGCAAGGGGAGATCAACAGCCGA GACTGGTCATCAACGACCCAAAACCAACGACGAGCGTTGGTGACAAAATTCCACTCTCAGATGGGCCATAAGGGA CGGCGAGTGACGTTTAACTACACCTCTGAGCGCTACTGGTGGCCAAAGGTGTGGAACGATGTCTGCGAAGCAACT GCCGCGTGCCCCGTCTGTCAGAACCTTGCGCCGCAGCGATTGAGGCGATGCTCGCAAGGAGACGATACGACATGG TCGCGCCGGGATACCAATACGAATGACGCATCAGAAGGAGCCGGCATCAATCTCGAATCTGAAGAGAGCCGTGCT TGA
Gene	>Ophio5\|3310 ATGCCACAGCAGCAGGACATGAATCACAAGCTCACCGGCAAGGCATTCATTTCCGCCATCGACGCCAAATCATTC TTCCACCAGTCCCTCGTCCACGAGGACGATGAGGAGAAATTCACCGTCATCAGCCATCGGGATGTCGACCTCCGC GCGTATTTGCGTGCCGGGCTTCGAAGAATTGGTCTGCCGTGGGTGCGACGCCTTTAACGCCTACAATATTCCAGC TTTTTTTTATTATACACGGCTTCGTGCCGATCATTTGATAGGACCCCGAAAGAGTTCAAGGCCTTTAAGAAAAAC AGCTTAAAGTACGACTTCCTAGACCAAAAGCTCTGGAGGAAGCCAGCAAGGGGAGATCAACAGCCGAGACTGGTC ATCAACGACCCAAAACCAACGACGAGCGTTGGTGACAAAATTCCACTCTCAGATGGGCCATAAGGGACGGCGAGT GACGTTTAACTACACCTCTGAGCGCTACTGGTGGCCAAAGGTGTGGAACGATGTCTGCGAAGCAACTGCCGCGTG CCCCGTCTGTCAGAACCTTGCGCCGCAGCGATTGAGGCGATGCTCGCAAGGAGACGATACGACATGGTCGCGCCG GGATACCAATACGAATGACGCATCAGAAGGAGCCGGCATCAATCTCGAATCTGAAGAGAGCCGTGCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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