Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|3284
Gene name
Location	scaffold_26:58828..60253
Strand	-
Gene length (bp)	1425
Transcript length (bp)	1425
Coding sequence length (bp)	1422
Protein length (aa)	474

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 20	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	11833.50	0.00	24880.50
CcL	In ants, during behavior modification	3.88	0.90	6.86
CcD	In ants, recently dead	3.33	0.69	5.97

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.000286	yes
CcL	CcD	0.734878	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|3284 MYRISMAAGALVALQGAWAQQPSQTDVYPAEHTEEVKGYEGQYVDACSPVGTVRFNSTFPPCLSASRIEPSCALP WKEGLSDEQRQGDWKAERKCLCDGSFFDDAGDGCLKCKGAYRIDSEENLAVWKGIWDKVRGSYCQDETLTGNFSS YFKAASDQSSFQPVKDLGTKPAAGSIPIEAYYKNDKQGPGPLPGSTSSNSTAQDEAGPMEGVAQLTPDCRTMIGA IDTLPGGNSAKFSNSSSGAILVSVQATFNRICIINGDQREVKAERKEEPVVTPISQEVVPKEKAAEKADFDMTGC SCAQKVVPEGKQVVQSKESVEAWAMVSVMTGFAMVGGQLPQGCEGAQCGAQGGADAGASAGSEASSSASGNVYSV DSVMGTFGGSAGGSAPASGGKSAVKAPAFVVKPGVQVSAKAQCGADGSCGQSKGSYGQKTEGASDGKPQCADGSC GQPQGSAEGQTAPKSGNEDEIDYC
Coding	>Ophio5\|3284 ATGTATAGAATTTCGATGGCAGCCGGCGCCCTCGTGGCACTGCAGGGAGCCTGGGCCCAGCAGCCCTCTCAGACC GATGTCTATCCTGCCGAGCACACGGAAGAGGTCAAGGGTTACGAGGGACAATATGTGGATGCCTGCTCGCCGGTT GGCACCGTTCGATTCAACTCGACTTTCCCGCCTTGCCTGAGCGCTAGCAGGATCGAGCCCAGCTGTGCTCTTCCT TGGAAGGAGGGTCTGTCGGATGAGCAGCGTCAGGGAGATTGGAAGGCGGAGAGGAAGTGTCTCTGCGACGGTAGC TTCTTTGATGATGCTGGTGATGGGTGCCTCAAGTGCAAGGGGGCTTACCGTATCGACAGCGAGGAGAACCTTGCA GTCTGGAAGGGCATTTGGGACAAGGTCCGTGGCAGCTACTGCCAGGATGAGACCCTGACGGGTAACTTCTCGTCG TACTTCAAAGCAGCCTCAGACCAGTCTTCGTTCCAACCGGTCAAGGACCTTGGCACGAAGCCCGCAGCCGGAAGC ATCCCGATCGAGGCCTACTACAAGAACGACAAGCAGGGCCCGGGCCCTCTCCCCGGCTCTACGTCCTCCAACTCG ACCGCCCAGGACGAAGCCGGACCAATGGAGGGCGTCGCGCAGCTCACGCCCGACTGCCGCACCATGATTGGCGCC ATCGATACGCTTCCGGGCGGCAACAGTGCCAAGTTTTCCAACTCGAGCTCGGGGGCCATTCTCGTCTCTGTGCAG GCGACTTTCAACCGCATCTGCATCATCAACGGTGACCAGCGTGAAGTCAAGGCTGAGCGCAAGGAAGAGCCCGTT GTTACGCCCATTTCGCAGGAGGTCGTGCCCAAGGAAAAGGCTGCGGAGAAGGCTGATTTCGATATGACGGGTTGC TCGTGCGCTCAGAAGGTTGTTCCTGAGGGTAAGCAGGTTGTCCAGTCGAAGGAGTCCGTCGAGGCTTGGGCTATG GTCTCTGTCATGACTGGATTCGCCATGGTTGGTGGACAGCTGCCGCAGGGCTGTGAGGGTGCTCAGTGCGGCGCT CAGGGCGGTGCTGATGCCGGTGCTTCTGCTGGCAGTGAGGCATCATCTTCTGCCTCCGGCAACGTCTACTCCGTC GACTCCGTCATGGGCACCTTCGGCGGATCGGCTGGTGGTTCGGCCCCTGCCTCTGGCGGCAAGTCTGCCGTCAAG GCTCCGGCCTTTGTTGTGAAGCCTGGCGTCCAGGTCTCTGCCAAAGCCCAGTGTGGCGCTGACGGCTCTTGCGGA CAGTCAAAGGGCTCCTATGGCCAAAAGACTGAGGGCGCCTCTGACGGAAAGCCCCAGTGCGCCGACGGCTCTTGC GGACAGCCTCAGGGTTCTGCTGAGGGCCAGACGGCGCCGAAGTCGGGCAACGAGGATGAGATCGACTACTGC
Transcript	>Ophio5\|3284 ATGTATAGAATTTCGATGGCAGCCGGCGCCCTCGTGGCACTGCAGGGAGCCTGGGCCCAGCAGCCCTCTCAGACC GATGTCTATCCTGCCGAGCACACGGAAGAGGTCAAGGGTTACGAGGGACAATATGTGGATGCCTGCTCGCCGGTT GGCACCGTTCGATTCAACTCGACTTTCCCGCCTTGCCTGAGCGCTAGCAGGATCGAGCCCAGCTGTGCTCTTCCT TGGAAGGAGGGTCTGTCGGATGAGCAGCGTCAGGGAGATTGGAAGGCGGAGAGGAAGTGTCTCTGCGACGGTAGC TTCTTTGATGATGCTGGTGATGGGTGCCTCAAGTGCAAGGGGGCTTACCGTATCGACAGCGAGGAGAACCTTGCA GTCTGGAAGGGCATTTGGGACAAGGTCCGTGGCAGCTACTGCCAGGATGAGACCCTGACGGGTAACTTCTCGTCG TACTTCAAAGCAGCCTCAGACCAGTCTTCGTTCCAACCGGTCAAGGACCTTGGCACGAAGCCCGCAGCCGGAAGC ATCCCGATCGAGGCCTACTACAAGAACGACAAGCAGGGCCCGGGCCCTCTCCCCGGCTCTACGTCCTCCAACTCG ACCGCCCAGGACGAAGCCGGACCAATGGAGGGCGTCGCGCAGCTCACGCCCGACTGCCGCACCATGATTGGCGCC ATCGATACGCTTCCGGGCGGCAACAGTGCCAAGTTTTCCAACTCGAGCTCGGGGGCCATTCTCGTCTCTGTGCAG GCGACTTTCAACCGCATCTGCATCATCAACGGTGACCAGCGTGAAGTCAAGGCTGAGCGCAAGGAAGAGCCCGTT GTTACGCCCATTTCGCAGGAGGTCGTGCCCAAGGAAAAGGCTGCGGAGAAGGCTGATTTCGATATGACGGGTTGC TCGTGCGCTCAGAAGGTTGTTCCTGAGGGTAAGCAGGTTGTCCAGTCGAAGGAGTCCGTCGAGGCTTGGGCTATG GTCTCTGTCATGACTGGATTCGCCATGGTTGGTGGACAGCTGCCGCAGGGCTGTGAGGGTGCTCAGTGCGGCGCT CAGGGCGGTGCTGATGCCGGTGCTTCTGCTGGCAGTGAGGCATCATCTTCTGCCTCCGGCAACGTCTACTCCGTC GACTCCGTCATGGGCACCTTCGGCGGATCGGCTGGTGGTTCGGCCCCTGCCTCTGGCGGCAAGTCTGCCGTCAAG GCTCCGGCCTTTGTTGTGAAGCCTGGCGTCCAGGTCTCTGCCAAAGCCCAGTGTGGCGCTGACGGCTCTTGCGGA CAGTCAAAGGGCTCCTATGGCCAAAAGACTGAGGGCGCCTCTGACGGAAAGCCCCAGTGCGCCGACGGCTCTTGC GGACAGCCTCAGGGTTCTGCTGAGGGCCAGACGGCGCCGAAGTCGGGCAACGAGGATGAGATCGACTACTGCTAG
Gene	>Ophio5\|3284 ATGTATAGAATTTCGATGGCAGCCGGCGCCCTCGTGGCACTGCAGGGAGCCTGGGCCCAGCAGCCCTCTCAGACC GATGTCTATCCTGCCGAGCACACGGAAGAGGTCAAGGGTTACGAGGGACAATATGTGGATGCCTGCTCGCCGGTT GGCACCGTTCGATTCAACTCGACTTTCCCGCCTTGCCTGAGCGCTAGCAGGATCGAGCCCAGCTGTGCTCTTCCT TGGAAGGAGGGTCTGTCGGATGAGCAGCGTCAGGGAGATTGGAAGGCGGAGAGGAAGTGTCTCTGCGACGGTAGC TTCTTTGATGATGCTGGTGATGGGTGCCTCAAGTGCAAGGGGGCTTACCGTATCGACAGCGAGGAGAACCTTGCA GTCTGGAAGGGCATTTGGGACAAGGTCCGTGGCAGCTACTGCCAGGATGAGACCCTGACGGGTAACTTCTCGTCG TACTTCAAAGCAGCCTCAGACCAGTCTTCGTTCCAACCGGTCAAGGACCTTGGCACGAAGCCCGCAGCCGGAAGC ATCCCGATCGAGGCCTACTACAAGAACGACAAGCAGGGCCCGGGCCCTCTCCCCGGCTCTACGTCCTCCAACTCG ACCGCCCAGGACGAAGCCGGACCAATGGAGGGCGTCGCGCAGCTCACGCCCGACTGCCGCACCATGATTGGCGCC ATCGATACGCTTCCGGGCGGCAACAGTGCCAAGTTTTCCAACTCGAGCTCGGGGGCCATTCTCGTCTCTGTGCAG GCGACTTTCAACCGCATCTGCATCATCAACGGTGACCAGCGTGAAGTCAAGGCTGAGCGCAAGGAAGAGCCCGTT GTTACGCCCATTTCGCAGGAGGTCGTGCCCAAGGAAAAGGCTGCGGAGAAGGCTGATTTCGATATGACGGGTTGC TCGTGCGCTCAGAAGGTTGTTCCTGAGGGTAAGCAGGTTGTCCAGTCGAAGGAGTCCGTCGAGGCTTGGGCTATG GTCTCTGTCATGACTGGATTCGCCATGGTTGGTGGACAGCTGCCGCAGGGCTGTGAGGGTGCTCAGTGCGGCGCT CAGGGCGGTGCTGATGCCGGTGCTTCTGCTGGCAGTGAGGCATCATCTTCTGCCTCCGGCAACGTCTACTCCGTC GACTCCGTCATGGGCACCTTCGGCGGATCGGCTGGTGGTTCGGCCCCTGCCTCTGGCGGCAAGTCTGCCGTCAAG GCTCCGGCCTTTGTTGTGAAGCCTGGCGTCCAGGTCTCTGCCAAAGCCCAGTGTGGCGCTGACGGCTCTTGCGGA CAGTCAAAGGGCTCCTATGGCCAAAAGACTGAGGGCGCCTCTGACGGAAAGCCCCAGTGCGCCGACGGCTCTTGC GGACAGCCTCAGGGTTCTGCTGAGGGCCAGACGGCGCCGAAGTCGGGCAACGAGGATGAGATCGACTACTGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail