Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|3280
Gene name
Location	scaffold_26:51158..52646
Strand	-
Gene length (bp)	1488
Transcript length (bp)	1428
Coding sequence length (bp)	1425
Protein length (aa)	475

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF08618	Opi1	Transcription factor Opi1	9.5E-27	234	392
PF08618	Opi1	Transcription factor Opi1	1.2E-07	403	444

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q01306\|CCG8_NEUCR	Clock-controlled protein 8 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ccg-8 PE=2 SV=3	57	445	4.0E-68

GO

GO Term	Description	Terminal node
GO:0003714	transcription corepressor activity	Yes
GO:0003712	transcription coregulator activity	No
GO:0140110	transcription regulator activity	No
GO:0003674	molecular_function	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 35	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	36.12	18.57	53.67
CcL	In ants, during behavior modification	166.91	82.46	251.35
CcD	In ants, recently dead	69.70	37.31	102.08

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.003935	yes
CcL	CcD	0.000286	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|3280 MPVSSPHDLDSPSPPPFKRHEPVIMPDPWNGSLAYRPPLAPVHAPSKGIDADVDRQLSLDDPDVRLAAEALGDLR ADFVSTPPEPCSSPDRTSQSPRPEPLLSLLTTSHPLVASTIGGASSAYGGAKNLSPRFKSGAEYVEGYLTPIANT VNSVGRVTGVEGGVRWFLGASRRHAAPDPEVGGYSHKRRKVCDGDVDLPGASLNLWSADPHRFDHRSPRRLSSTS TVDTLPAYDELRSPAYTETTGSQAAPRPGPWQSRLMLSTSGLSVSMSAESLRSLKYCLRWLRWTNDHMGRVIGTL KATIEEYEKTRPQASPTPPEADAPATSPEPGPEPSRLELINRINTLKSDILKTLQNTIETVSKYAGGALPENARV LVRRHLTSLPQRFRIATMSTDGGEGRDAESAISEGAQKVLLLAKEGLDMVTQVSGVVDGTIMSAEEWCERMDGTR QSPTDEEDQSGASQQEPGSGGVKMA
Coding	>Ophio5\|3280 ATGCCCGTCTCCTCCCCCCACGACCTCGACTCGCCGTCTCCGCCCCCGTTCAAGCGTCATGAGCCCGTGATCATG CCCGATCCGTGGAACGGCTCGCTGGCCTATCGCCCTCCGCTGGCGCCCGTCCACGCTCCGTCCAAAGGCATTGAT GCTGACGTCGATCGTCAACTATCCCTCGACGATCCCGATGTGCGCCTGGCCGCTGAGGCCTTGGGCGACCTGAGA GCCGACTTCGTCTCGACGCCGCCGGAACCGTGCTCCTCGCCAGACCGGACCTCTCAGTCGCCCCGGCCAGAGCCG CTACTGTCCCTTCTCACCACGTCACATCCTCTGGTTGCGAGCACCATCGGAGGCGCCAGCTCGGCCTATGGGGGA GCTAAGAACTTGTCGCCGCGCTTCAAATCCGGTGCCGAATATGTCGAGGGCTATCTGACCCCCATCGCTAACACT GTCAACTCGGTCGGCCGCGTCACCGGAGTCGAGGGCGGCGTCCGCTGGTTCCTCGGTGCCAGCCGCCGCCACGCC GCCCCTGATCCTGAAGTTGGCGGTTACTCGCACAAGCGGCGTAAGGTCTGCGACGGCGATGTCGACCTCCCCGGC GCTTCCCTCAACCTGTGGTCCGCCGACCCGCACCGCTTCGATCACCGAAGCCCTCGCCGCCTGTCTTCGACGAGC ACCGTCGACACTCTACCAGCTTACGACGAGTTGCGGTCCCCCGCCTACACAGAGACGACGGGCTCACAAGCTGCG CCGCGACCCGGCCCGTGGCAGTCGCGCCTGATGCTGTCCACTTCGGGTCTCAGCGTTTCCATGAGCGCCGAGAGC TTGCGTAGTCTCAAGTACTGCCTGCGCTGGCTGCGCTGGACCAATGACCACATGGGTCGCGTCATCGGCACCCTC AAGGCCACCATCGAAGAATACGAAAAGACACGGCCGCAGGCATCTCCGACTCCTCCAGAGGCCGACGCCCCTGCC ACTAGTCCCGAGCCGGGCCCGGAGCCGTCGCGGCTCGAGCTCATCAACCGCATCAACACGCTCAAGTCGGACATA CTCAAGACGCTTCAGAACACCATCGAGACGGTGTCCAAGTACGCCGGCGGCGCCCTGCCTGAGAACGCGCGTGTG CTCGTCCGCCGCCACCTCACCAGCCTGCCTCAGCGCTTCCGCATTGCCACCATGTCGACTGACGGCGGCGAAGGC AGGGACGCCGAGTCAGCCATCAGCGAGGGCGCACAGAAGGTGCTCCTCCTGGCCAAGGAGGGGCTCGACATGGTG ACTCAAGTCAGCGGCGTCGTTGACGGCACCATCATGAGCGCCGAGGAGTGGTGCGAGCGCATGGACGGGACGAGG CAGTCTCCGACGGACGAAGAGGACCAGTCTGGTGCGTCGCAACAGGAGCCCGGCAGTGGTGGTGTCAAGATGGCC
Transcript	>Ophio5\|3280 ATGCCCGTCTCCTCCCCCCACGACCTCGACTCGCCGTCTCCGCCCCCGTTCAAGCGTCATGAGCCCGTGATCATG CCCGATCCGTGGAACGGCTCGCTGGCCTATCGCCCTCCGCTGGCGCCCGTCCACGCTCCGTCCAAAGGCATTGAT GCTGACGTCGATCGTCAACTATCCCTCGACGATCCCGATGTGCGCCTGGCCGCTGAGGCCTTGGGCGACCTGAGA GCCGACTTCGTCTCGACGCCGCCGGAACCGTGCTCCTCGCCAGACCGGACCTCTCAGTCGCCCCGGCCAGAGCCG CTACTGTCCCTTCTCACCACGTCACATCCTCTGGTTGCGAGCACCATCGGAGGCGCCAGCTCGGCCTATGGGGGA GCTAAGAACTTGTCGCCGCGCTTCAAATCCGGTGCCGAATATGTCGAGGGCTATCTGACCCCCATCGCTAACACT GTCAACTCGGTCGGCCGCGTCACCGGAGTCGAGGGCGGCGTCCGCTGGTTCCTCGGTGCCAGCCGCCGCCACGCC GCCCCTGATCCTGAAGTTGGCGGTTACTCGCACAAGCGGCGTAAGGTCTGCGACGGCGATGTCGACCTCCCCGGC GCTTCCCTCAACCTGTGGTCCGCCGACCCGCACCGCTTCGATCACCGAAGCCCTCGCCGCCTGTCTTCGACGAGC ACCGTCGACACTCTACCAGCTTACGACGAGTTGCGGTCCCCCGCCTACACAGAGACGACGGGCTCACAAGCTGCG CCGCGACCCGGCCCGTGGCAGTCGCGCCTGATGCTGTCCACTTCGGGTCTCAGCGTTTCCATGAGCGCCGAGAGC TTGCGTAGTCTCAAGTACTGCCTGCGCTGGCTGCGCTGGACCAATGACCACATGGGTCGCGTCATCGGCACCCTC AAGGCCACCATCGAAGAATACGAAAAGACACGGCCGCAGGCATCTCCGACTCCTCCAGAGGCCGACGCCCCTGCC ACTAGTCCCGAGCCGGGCCCGGAGCCGTCGCGGCTCGAGCTCATCAACCGCATCAACACGCTCAAGTCGGACATA CTCAAGACGCTTCAGAACACCATCGAGACGGTGTCCAAGTACGCCGGCGGCGCCCTGCCTGAGAACGCGCGTGTG CTCGTCCGCCGCCACCTCACCAGCCTGCCTCAGCGCTTCCGCATTGCCACCATGTCGACTGACGGCGGCGAAGGC AGGGACGCCGAGTCAGCCATCAGCGAGGGCGCACAGAAGGTGCTCCTCCTGGCCAAGGAGGGGCTCGACATGGTG ACTCAAGTCAGCGGCGTCGTTGACGGCACCATCATGAGCGCCGAGGAGTGGTGCGAGCGCATGGACGGGACGAGG CAGTCTCCGACGGACGAAGAGGACCAGTCTGGTGCGTCGCAACAGGAGCCCGGCAGTGGTGGTGTCAAGATGGCC TAG
Gene	>Ophio5\|3280 ATGCCCGTCTCCTCCCCCCACGACCTCGACTCGCCGTCTCCGCCCCCGTTCAAGCGTCATGAGCCCGTGATCATG CCCGATCCGTGGAACGGCTCGCTGGCCTATCGCCCTCCGCTGGCGCCCGTCCACGCTCCGTCCAAAGGCATTGAT GCTGACGTCGATCGTCAACTATCCCTCGACGATCCCGATGTGCGCCTGGCCGCTGAGGCCTTGGGCGACCTGAGA GCCGGTCAGCCCCTCACCCCTGACTGGTCTTGTCTCCTCTGCCGCTGACCCGCTTCGCCTCCAGACTTCGTCTCG ACGCCGCCGGAACCGTGCTCCTCGCCAGACCGGACCTCTCAGTCGCCCCGGCCAGAGCCGCTACTGTCCCTTCTC ACCACGTCACATCCTCTGGTTGCGAGCACCATCGGAGGCGCCAGCTCGGCCTATGGGGGAGCTAAGAACTTGTCG CCGCGCTTCAAATCCGGTGCCGAATATGTCGAGGGCTATCTGACCCCCATCGCTAACACTGTCAACTCGGTCGGC CGCGTCACCGGAGTCGAGGGCGGCGTCCGCTGGTTCCTCGGTGCCAGCCGCCGCCACGCCGCCCCTGATCCTGAA GTTGGCGGTTACTCGCACAAGCGGCGTAAGGTCTGCGACGGCGATGTCGACCTCCCCGGCGCTTCCCTCAACCTG TGGTCCGCCGACCCGCACCGCTTCGATCACCGAAGCCCTCGCCGCCTGTCTTCGACGAGCACCGTCGACACTCTA CCAGCTTACGACGAGTTGCGGTCCCCCGCCTACACAGAGACGACGGGCTCACAAGCTGCGCCGCGACCCGGCCCG TGGCAGTCGCGCCTGATGCTGTCCACTTCGGGTCTCAGCGTTTCCATGAGCGCCGAGAGCTTGCGTAGTCTCAAG TACTGCCTGCGCTGGCTGCGCTGGACCAATGACCACATGGGTCGCGTCATCGGCACCCTCAAGGCCACCATCGAA GAATACGAAAAGACACGGCCGCAGGCATCTCCGACTCCTCCAGAGGCCGACGCCCCTGCCACTAGTCCCGAGCCG GGCCCGGAGCCGTCGCGGCTCGAGCTCATCAACCGCATCAACACGCTCAAGTCGGACATACTCAAGACGCTTCAG AACACCATCGAGACGGTGTCCAAGTACGCCGGCGGCGCCCTGCCTGAGAACGCGCGTGTGCTCGTCCGCCGCCAC CTCACCAGCCTGCCTCAGCGCTTCCGCATTGCCACCATGTCGACTGACGGCGGCGAAGGCAGGGACGCCGAGTCA GCCATCAGCGAGGGCGCACAGAAGGTGCTCCTCCTGGCCAAGGAGGGGCTCGACATGGTGACTCAAGTCAGCGGC GTCGTTGACGGCACCATCATGAGCGCCGAGGAGTGGTGCGAGCGCATGGACGGGACGAGGCAGTCTCCGACGGAC GAAGAGGACCAGTCTGGTGCGTCGCAACAGGAGCCCGGCAGTGGTGGTGTCAAGATGGCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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