Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|327
Gene name
Locationscaffold_1072:105..1204
Strand-
Gene length (bp)1099
Transcript length (bp)828
Coding sequence length (bp)825
Protein length (aa) 275

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 34 0.5

Transmembrane Domains

Domain # Start End Length
1 19 41 22
2 65 87 22
3 100 122 22
4 132 154 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.00 0.0 0.00
CcL In ants, during behavior modification 0.08 0.0 0.44
CcD In ants, recently dead 0.07 0.0 0.44

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|327
MVNARARFDGAKWSPDVLLPLWALQLMLSMSMAGMFSWRIADTTAAASRHEGGGGGGVETAELELAWQIVNIVMA
TAIAGCTFFEMAKFVGEALTPWTMVLTHLIKLVCAVVVLVVDIAVYVLGQDARYSLVGIGLDLSLIVCVLALGLY
AALIHRRTCAYDGYTRPFNVKSYGFSDELQSSTSFVPSIRSRRFSLRAGSVSYDKRASSSSLASTRQLLPSSGLF
EIDSTPPVGQTSYSHRRDTQFDERARHASCGSHDDDDHVSPRRKHGPCRC
Coding >Ophio5|327
ATGGTAAACGCCCGAGCGCGCTTCGATGGCGCAAAATGGAGTCCCGACGTGCTCCTCCCGCTGTGGGCGCTGCAG
CTGATGCTATCCATGTCCATGGCCGGCATGTTTTCGTGGAGGATAGCGGATACGACGGCGGCTGCGTCTCGTCAT
GAAGGAGGAGGAGGCGGCGGCGTCGAGACGGCTGAGCTGGAACTTGCCTGGCAGATCGTCAACATCGTCATGGCC
ACCGCCATAGCCGGATGCACCTTTTTCGAAATGGCAAAGTTTGTCGGTGAGGCTTTGACGCCTTGGACCATGGTG
TTGACGCACCTGATCAAGCTGGTGTGCGCAGTCGTCGTCTTGGTTGTCGACATAGCCGTCTATGTGCTTGGACAA
GACGCTCGATATTCTCTCGTCGGGATCGGGCTCGACCTTTCGTTGATAGTCTGTGTCCTGGCATTGGGCCTCTAC
GCTGCTCTCATCCATCGACGGACTTGTGCTTATGACGGGTACACTCGTCCCTTTAACGTCAAGAGCTACGGCTTC
AGCGACGAGCTCCAGAGCAGCACCTCTTTTGTGCCCTCCATCCGCTCGCGTCGTTTCAGTCTTCGCGCCGGCTCC
GTGTCCTACGACAAGCGGGCGTCCAGCTCGTCCTTGGCATCTACACGACAACTTCTCCCCTCCTCTGGTCTCTTC
GAGATCGATTCTACCCCGCCAGTCGGCCAGACTAGCTACAGCCATCGTCGCGATACCCAATTCGACGAACGAGCT
CGACATGCCTCCTGCGGCAGCCACGACGACGACGACCATGTTAGCCCGCGGCGCAAGCATGGTCCGTGTCGGTGT
Transcript >Ophio5|327
ATGGTAAACGCCCGAGCGCGCTTCGATGGCGCAAAATGGAGTCCCGACGTGCTCCTCCCGCTGTGGGCGCTGCAG
CTGATGCTATCCATGTCCATGGCCGGCATGTTTTCGTGGAGGATAGCGGATACGACGGCGGCTGCGTCTCGTCAT
GAAGGAGGAGGAGGCGGCGGCGTCGAGACGGCTGAGCTGGAACTTGCCTGGCAGATCGTCAACATCGTCATGGCC
ACCGCCATAGCCGGATGCACCTTTTTCGAAATGGCAAAGTTTGTCGGTGAGGCTTTGACGCCTTGGACCATGGTG
TTGACGCACCTGATCAAGCTGGTGTGCGCAGTCGTCGTCTTGGTTGTCGACATAGCCGTCTATGTGCTTGGACAA
GACGCTCGATATTCTCTCGTCGGGATCGGGCTCGACCTTTCGTTGATAGTCTGTGTCCTGGCATTGGGCCTCTAC
GCTGCTCTCATCCATCGACGGACTTGTGCTTATGACGGGTACACTCGTCCCTTTAACGTCAAGAGCTACGGCTTC
AGCGACGAGCTCCAGAGCAGCACCTCTTTTGTGCCCTCCATCCGCTCGCGTCGTTTCAGTCTTCGCGCCGGCTCC
GTGTCCTACGACAAGCGGGCGTCCAGCTCGTCCTTGGCATCTACACGACAACTTCTCCCCTCCTCTGGTCTCTTC
GAGATCGATTCTACCCCGCCAGTCGGCCAGACTAGCTACAGCCATCGTCGCGATACCCAATTCGACGAACGAGCT
CGACATGCCTCCTGCGGCAGCCACGACGACGACGACCATGTTAGCCCGCGGCGCAAGCATGGTCCGTGTCGGTGT
TGA
Gene >Ophio5|327
ATGGTAAACGCCCGAGCGCGCTTCGATGGCGCAAAATGGAGTCCCGACGTGCTCCTCCCGCTGTGGGCGCTGCAG
CTGATGCTATCCATGTCCATGGCCGGCATGTTTTCGTGGAGGATAGCGGATACGACGGCGGCTGCGTCTCGTCAT
GAAGGAGGAGGAGGCGGCGGCGTCGAGACGGCTGAGCTGGAACTTGCGTACGTTCTTTTGTGCTTGCTTCTCTCC
GCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGGTGGTGGTGTTGATGTTCTTTTCGCTTCGGACTGAC
GATGGGGGGTCACAGCTGGCAGATCGTCAACATCGTCATGGCCACCGCCATAGCCGGATGCACCTTTTTCGAAAT
GGCAAAGTTTGTCGGTGAGGCTTTGACGCCTTGGACCATGGTGTTGACGCACCTGATCAAGCTGGTGTGCGCAGT
CGTCGTCTTGGTTGTCGACATAGCCGTCTATGTGCTTGGACAAGACGCTCGATATTCTCTCGTCGGGATCGGGCT
CGACCTTTCGTTGATGTTGGTCTCCCATCTTTTCCCTCTCTCTTCAATCCTCTGTTTTCTTTTTTTTCTTTTTTT
TTTTTCTCATGCTGACGACATGGGCATAAAAAAGAGTCTGTGTCCTGGCATTGGGCCTCTACGCTGCTCTCATCC
ATCGACGGACTTGTGCTTATGACGGGTACACTCGTCCCTTTAACGTCAAGAGCTACGGCTTCAGCGACGAGCTCC
AGAGCAGCACCTCTTTTGTGCCCTCCATCCGCTCGCGTCGTTTCAGTCTTCGCGCCGGCTCCGTGTCCTACGACA
AGCGGGCGTCCAGCTCGTCCTTGGCATCTACACGACAACTTCTCCCCTCCTCTGGTCTCTTCGAGATCGATTCTA
CCCCGCCAGTCGGCCAGACTAGCTACAGCCATCGTCGCGATACCCAATTCGACGAGTACGTCGCCCGACGCGGCT
CACTCCTACCTTTGTCCATGACGACCACCTTTCCACTAGACGAGCTCGACATGCCTCCTGCGGCAGCCACGACGA
CGACGACCATGTTAGCCCGCGGCGCAAGCATGGTCCGTGTCGGTGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail