Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|327
Gene name
Location	scaffold_1072:105..1204
Strand	-
Gene length (bp)	1099
Transcript length (bp)	828
Coding sequence length (bp)	825
Protein length (aa)	275

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 34	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	19	41	22
2	65	87	22
3	100	122	22
4	132	154	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	0.00	0.0	0.00
CcL	In ants, during behavior modification	0.08	0.0	0.44
CcD	In ants, recently dead	0.07	0.0	0.44

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	1.0	no
SC16a	CcD	1.0	no
CcL	CcD	1.0	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|327 MVNARARFDGAKWSPDVLLPLWALQLMLSMSMAGMFSWRIADTTAAASRHEGGGGGGVETAELELAWQIVNIVMA TAIAGCTFFEMAKFVGEALTPWTMVLTHLIKLVCAVVVLVVDIAVYVLGQDARYSLVGIGLDLSLIVCVLALGLY AALIHRRTCAYDGYTRPFNVKSYGFSDELQSSTSFVPSIRSRRFSLRAGSVSYDKRASSSSLASTRQLLPSSGLF EIDSTPPVGQTSYSHRRDTQFDERARHASCGSHDDDDHVSPRRKHGPCRC
Coding	>Ophio5\|327 ATGGTAAACGCCCGAGCGCGCTTCGATGGCGCAAAATGGAGTCCCGACGTGCTCCTCCCGCTGTGGGCGCTGCAG CTGATGCTATCCATGTCCATGGCCGGCATGTTTTCGTGGAGGATAGCGGATACGACGGCGGCTGCGTCTCGTCAT GAAGGAGGAGGAGGCGGCGGCGTCGAGACGGCTGAGCTGGAACTTGCCTGGCAGATCGTCAACATCGTCATGGCC ACCGCCATAGCCGGATGCACCTTTTTCGAAATGGCAAAGTTTGTCGGTGAGGCTTTGACGCCTTGGACCATGGTG TTGACGCACCTGATCAAGCTGGTGTGCGCAGTCGTCGTCTTGGTTGTCGACATAGCCGTCTATGTGCTTGGACAA GACGCTCGATATTCTCTCGTCGGGATCGGGCTCGACCTTTCGTTGATAGTCTGTGTCCTGGCATTGGGCCTCTAC GCTGCTCTCATCCATCGACGGACTTGTGCTTATGACGGGTACACTCGTCCCTTTAACGTCAAGAGCTACGGCTTC AGCGACGAGCTCCAGAGCAGCACCTCTTTTGTGCCCTCCATCCGCTCGCGTCGTTTCAGTCTTCGCGCCGGCTCC GTGTCCTACGACAAGCGGGCGTCCAGCTCGTCCTTGGCATCTACACGACAACTTCTCCCCTCCTCTGGTCTCTTC GAGATCGATTCTACCCCGCCAGTCGGCCAGACTAGCTACAGCCATCGTCGCGATACCCAATTCGACGAACGAGCT CGACATGCCTCCTGCGGCAGCCACGACGACGACGACCATGTTAGCCCGCGGCGCAAGCATGGTCCGTGTCGGTGT
Transcript	>Ophio5\|327 ATGGTAAACGCCCGAGCGCGCTTCGATGGCGCAAAATGGAGTCCCGACGTGCTCCTCCCGCTGTGGGCGCTGCAG CTGATGCTATCCATGTCCATGGCCGGCATGTTTTCGTGGAGGATAGCGGATACGACGGCGGCTGCGTCTCGTCAT GAAGGAGGAGGAGGCGGCGGCGTCGAGACGGCTGAGCTGGAACTTGCCTGGCAGATCGTCAACATCGTCATGGCC ACCGCCATAGCCGGATGCACCTTTTTCGAAATGGCAAAGTTTGTCGGTGAGGCTTTGACGCCTTGGACCATGGTG TTGACGCACCTGATCAAGCTGGTGTGCGCAGTCGTCGTCTTGGTTGTCGACATAGCCGTCTATGTGCTTGGACAA GACGCTCGATATTCTCTCGTCGGGATCGGGCTCGACCTTTCGTTGATAGTCTGTGTCCTGGCATTGGGCCTCTAC GCTGCTCTCATCCATCGACGGACTTGTGCTTATGACGGGTACACTCGTCCCTTTAACGTCAAGAGCTACGGCTTC AGCGACGAGCTCCAGAGCAGCACCTCTTTTGTGCCCTCCATCCGCTCGCGTCGTTTCAGTCTTCGCGCCGGCTCC GTGTCCTACGACAAGCGGGCGTCCAGCTCGTCCTTGGCATCTACACGACAACTTCTCCCCTCCTCTGGTCTCTTC GAGATCGATTCTACCCCGCCAGTCGGCCAGACTAGCTACAGCCATCGTCGCGATACCCAATTCGACGAACGAGCT CGACATGCCTCCTGCGGCAGCCACGACGACGACGACCATGTTAGCCCGCGGCGCAAGCATGGTCCGTGTCGGTGT TGA
Gene	>Ophio5\|327 ATGGTAAACGCCCGAGCGCGCTTCGATGGCGCAAAATGGAGTCCCGACGTGCTCCTCCCGCTGTGGGCGCTGCAG CTGATGCTATCCATGTCCATGGCCGGCATGTTTTCGTGGAGGATAGCGGATACGACGGCGGCTGCGTCTCGTCAT GAAGGAGGAGGAGGCGGCGGCGTCGAGACGGCTGAGCTGGAACTTGCGTACGTTCTTTTGTGCTTGCTTCTCTCC GCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGGTGGTGGTGTTGATGTTCTTTTCGCTTCGGACTGAC GATGGGGGGTCACAGCTGGCAGATCGTCAACATCGTCATGGCCACCGCCATAGCCGGATGCACCTTTTTCGAAAT GGCAAAGTTTGTCGGTGAGGCTTTGACGCCTTGGACCATGGTGTTGACGCACCTGATCAAGCTGGTGTGCGCAGT CGTCGTCTTGGTTGTCGACATAGCCGTCTATGTGCTTGGACAAGACGCTCGATATTCTCTCGTCGGGATCGGGCT CGACCTTTCGTTGATGTTGGTCTCCCATCTTTTCCCTCTCTCTTCAATCCTCTGTTTTCTTTTTTTTCTTTTTTT TTTTTCTCATGCTGACGACATGGGCATAAAAAAGAGTCTGTGTCCTGGCATTGGGCCTCTACGCTGCTCTCATCC ATCGACGGACTTGTGCTTATGACGGGTACACTCGTCCCTTTAACGTCAAGAGCTACGGCTTCAGCGACGAGCTCC AGAGCAGCACCTCTTTTGTGCCCTCCATCCGCTCGCGTCGTTTCAGTCTTCGCGCCGGCTCCGTGTCCTACGACA AGCGGGCGTCCAGCTCGTCCTTGGCATCTACACGACAACTTCTCCCCTCCTCTGGTCTCTTCGAGATCGATTCTA CCCCGCCAGTCGGCCAGACTAGCTACAGCCATCGTCGCGATACCCAATTCGACGAGTACGTCGCCCGACGCGGCT CACTCCTACCTTTGTCCATGACGACCACCTTTCCACTAGACGAGCTCGACATGCCTCCTGCGGCAGCCACGACGA CGACGACCATGTTAGCCCGCGGCGCAAGCATGGTCCGTGTCGGTGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail