Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3255
Gene name
Locationscaffold_26:3898..5621
Strand-
Gene length (bp)1723
Transcript length (bp)1578
Coding sequence length (bp)1575
Protein length (aa) 525

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01169 UPF0016 Uncharacterized protein family UPF0016 1.5E-20 250 323
PF01169 UPF0016 Uncharacterized protein family UPF0016 3.1E-19 442 515

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P38301|GDT1_YEAST GCR1-dependent translation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDT1 PE=1 SV=1 247 523 3.0E-59
sp|Q10320|YD68_SCHPO GDT1-like protein C17G8.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.08c PE=3 SV=1 247 523 2.0E-51
sp|Q9P7Q0|YLY5_SCHPO GDT1-like protein C186.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC186.05c PE=3 SV=1 250 523 1.0E-36
sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1 246 356 4.0E-28
sp|Q4V899|TM165_RAT Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1 246 356 2.0E-24
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Swissprot ID Swissprot Description Start End E-value
sp|P38301|GDT1_YEAST GCR1-dependent translation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDT1 PE=1 SV=1 247 523 3.0E-59
sp|Q10320|YD68_SCHPO GDT1-like protein C17G8.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.08c PE=3 SV=1 247 523 2.0E-51
sp|Q9P7Q0|YLY5_SCHPO GDT1-like protein C186.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC186.05c PE=3 SV=1 250 523 1.0E-36
sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1 246 356 4.0E-28
sp|Q4V899|TM165_RAT Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1 246 356 2.0E-24
sp|P52875|TM165_MOUSE Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=1 SV=2 246 356 3.0E-24
sp|P52876|Y615_SYNY3 GDT1-like protein sll0615 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0615 PE=3 SV=1 441 517 3.0E-20
sp|P52875|TM165_MOUSE Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=1 SV=2 435 520 9.0E-20
sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1 435 520 1.0E-19
sp|Q4V899|TM165_RAT Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1 435 520 1.0E-19
sp|Q2R4J1|GDT13_ORYSJ GDT1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0472500 PE=2 SV=1 245 335 2.0E-19
sp|A2ZE50|GDT13_ORYSI GDT1-like protein 3 OS=Oryza sativa subsp. indica GN=OsI_36063 PE=3 SV=1 245 335 2.0E-19
sp|Q6ZIB9|GDT14_ORYSJ GDT1-like protein 4 OS=Oryza sativa subsp. japonica GN=Os08g0528500 PE=2 SV=1 228 334 1.0E-18
sp|A2YXC7|GDT14_ORYSI GDT1-like protein 4 OS=Oryza sativa subsp. indica GN=OsI_29993 PE=3 SV=1 228 334 1.0E-18
sp|Q93Y38|GDT13_ARATH GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1 431 515 2.0E-17
sp|Q9C6M1|GDT14_ARATH GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1 246 332 6.0E-17
sp|Q93Y38|GDT13_ARATH GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1 245 327 2.0E-16
sp|Q9SX28|GDT15_ARATH GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=1 SV=1 246 332 5.0E-16
sp|B9G125|GDT15_ORYSJ GDT1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os08g0433100 PE=2 SV=1 435 514 9.0E-16
sp|Q6ZIB9|GDT14_ORYSJ GDT1-like protein 4 OS=Oryza sativa subsp. japonica GN=Os08g0528500 PE=2 SV=1 431 515 1.0E-15
sp|A2ZE50|GDT13_ORYSI GDT1-like protein 3 OS=Oryza sativa subsp. indica GN=OsI_36063 PE=3 SV=1 429 515 1.0E-15
sp|Q2R4J1|GDT13_ORYSJ GDT1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0472500 PE=2 SV=1 429 515 1.0E-15
sp|A2YXC7|GDT14_ORYSI GDT1-like protein 4 OS=Oryza sativa subsp. indica GN=OsI_29993 PE=3 SV=1 431 515 1.0E-15
sp|B9G125|GDT15_ORYSJ GDT1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os08g0433100 PE=2 SV=1 248 336 2.0E-15
sp|Q9C6M1|GDT14_ARATH GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1 435 514 8.0E-15
sp|Q9SX28|GDT15_ARATH GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=1 SV=1 435 514 2.0E-14
sp|P52876|Y615_SYNY3 GDT1-like protein sll0615 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0615 PE=3 SV=1 247 356 2.0E-13
sp|Q2R2Z4|GDT12_ORYSJ GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0544500 PE=2 SV=1 440 515 1.0E-11
sp|Q9T0H9|GDT12_ARATH GDT1-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=At4g13590 PE=1 SV=2 440 515 3.0E-11
sp|Q9T0H9|GDT12_ARATH GDT1-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=At4g13590 PE=1 SV=2 248 354 6.0E-11
sp|Q5NAY7|GDT11_ORYSJ GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0221700 PE=3 SV=2 442 524 2.0E-10
sp|B8AAM2|GDT11_ORYSI GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_00941 PE=3 SV=2 442 524 2.0E-10
sp|Q2R2Z4|GDT12_ORYSJ GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0544500 PE=2 SV=1 248 354 7.0E-10
sp|Q94AX5|GDT11_ARATH GDT1-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64150 PE=2 SV=2 248 354 4.0E-09
sp|Q5NAY7|GDT11_ORYSJ GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0221700 PE=3 SV=2 248 334 5.0E-07
sp|B8AAM2|GDT11_ORYSI GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_00941 PE=3 SV=2 248 334 7.0E-07
sp|Q94AX5|GDT11_ARATH GDT1-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64150 PE=2 SV=2 441 521 2.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 27 0.45

Transmembrane Domains

Domain # Start End Length
1 278 300 22
2 310 327 17
3 427 449 22
4 469 491 22
5 498 520 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3255
MKLHACRRSALPLLLLPLLVPSLAASLRPDLSTGVHVRVKPRHDMPTRAAPVDGKDGKPHSGPFVEKADSDRKGL
PPLRGRPVDVTVVDGIRIPKSNDGVMFDRNREHAQEGTTGTEGGVSEKDKARKAKEGETGERAVGQPLSPKEQPP
LPDSEEKKLQTSDEKYRDMSKARPSAQEDDSSDYTGLGKPVYLPDVPREDSNPSPKSKAKDGVDLENPTTGSPRK
TGEASRDGDKRDEDGIIRPFHSFILSLTMILVSEVGDKTFLVAALMAMKHDRLLVFSAAFGALLVMTVLSALLGH
AVPTLIPKRLTSLLAAVLFFVFGLKLLREGLKMDPDEGVSAEMEEVEQELADKEKEQHHGNQYRHGRRSHHRHSV
SPHALEMGLGSKPVRGSRSKGRFPSPPRSPSQSPSRPSSPRGGRSVDDLVHGVGNLCSLLLSPAWVQTFAMTFVG
EWGDRSQIATIAMAAGQDYWWVTLGAMCGHAVCTSVAVVGGRAIAGRVSLKVVTVGGALAFLIFAFVYLIEALHG
Coding >Ophio5|3255
ATGAAGCTCCACGCCTGTAGGCGCTCGGCGCTTCCGCTACTGCTTCTACCGCTGCTGGTCCCCTCGCTGGCGGCC
AGCCTCAGGCCTGACCTGTCCACAGGCGTCCATGTTCGCGTTAAGCCGCGCCATGACATGCCGACCCGGGCGGCG
CCCGTCGACGGCAAGGATGGGAAGCCCCATTCCGGTCCCTTTGTCGAAAAGGCCGACTCGGATCGCAAAGGTCTG
CCTCCCCTTCGGGGCAGGCCTGTGGATGTCACCGTCGTCGATGGCATCAGGATTCCCAAGTCAAACGATGGTGTC
ATGTTCGATAGGAACCGCGAGCACGCGCAGGAGGGCACGACCGGCACCGAAGGCGGCGTTTCGGAAAAGGACAAG
GCGCGTAAGGCAAAGGAGGGCGAGACTGGAGAGCGCGCCGTTGGTCAGCCCCTGTCGCCAAAGGAGCAGCCCCCC
TTACCGGACAGCGAAGAGAAGAAGCTGCAGACGAGCGACGAAAAGTACAGGGATATGAGCAAGGCGAGGCCTTCT
GCCCAGGAAGACGACTCGTCTGATTATACAGGGCTCGGCAAGCCCGTTTACCTCCCCGATGTACCGCGCGAAGAT
TCGAATCCGTCGCCCAAGTCCAAGGCGAAAGATGGCGTCGACTTGGAAAATCCCACGACCGGCTCGCCGCGGAAG
ACGGGAGAAGCGAGTCGCGACGGAGACAAACGTGACGAGGACGGCATCATCCGGCCCTTTCACTCCTTCATCCTC
TCCCTGACCATGATACTCGTCTCCGAGGTGGGCGACAAGACATTCCTGGTAGCAGCACTGATGGCGATGAAGCAC
GACCGGCTCCTCGTCTTCTCAGCCGCCTTTGGCGCCCTCCTCGTCATGACGGTGCTATCAGCCCTGCTCGGCCAC
GCCGTACCGACATTGATCCCGAAACGGCTCACCAGCCTCCTCGCCGCCGTCCTCTTCTTCGTCTTCGGGCTCAAA
CTCCTACGCGAGGGTCTCAAGATGGACCCGGACGAGGGCGTGTCGGCCGAAATGGAAGAAGTAGAACAGGAACTG
GCCGACAAGGAAAAAGAACAACACCACGGAAATCAATACCGCCACGGCCGTCGTTCCCATCACCGTCACTCCGTC
TCCCCCCACGCCCTCGAGATGGGCCTCGGCAGCAAGCCGGTCCGCGGCTCCCGCTCCAAAGGCCGCTTCCCCTCC
CCGCCACGATCCCCCTCGCAATCGCCCTCCCGGCCTTCATCCCCTCGAGGCGGCCGATCGGTCGACGACTTGGTC
CACGGAGTCGGAAATCTTTGCTCGCTCCTGCTCAGCCCGGCTTGGGTGCAGACGTTCGCCATGACCTTTGTGGGC
GAGTGGGGTGATCGAAGTCAGATTGCGACTATAGCCATGGCGGCTGGACAGGATTATTGGTGGGTTACCCTCGGT
GCCATGTGCGGTCATGCTGTCTGTACCAGCGTTGCTGTTGTCGGTGGCCGTGCTATTGCTGGTCGTGTGAGCCTC
AAAGTCGTCACCGTCGGAGGCGCCCTCGCCTTTCTCATCTTCGCCTTCGTATATCTCATCGAAGCTCTACACGGA
Transcript >Ophio5|3255
ATGAAGCTCCACGCCTGTAGGCGCTCGGCGCTTCCGCTACTGCTTCTACCGCTGCTGGTCCCCTCGCTGGCGGCC
AGCCTCAGGCCTGACCTGTCCACAGGCGTCCATGTTCGCGTTAAGCCGCGCCATGACATGCCGACCCGGGCGGCG
CCCGTCGACGGCAAGGATGGGAAGCCCCATTCCGGTCCCTTTGTCGAAAAGGCCGACTCGGATCGCAAAGGTCTG
CCTCCCCTTCGGGGCAGGCCTGTGGATGTCACCGTCGTCGATGGCATCAGGATTCCCAAGTCAAACGATGGTGTC
ATGTTCGATAGGAACCGCGAGCACGCGCAGGAGGGCACGACCGGCACCGAAGGCGGCGTTTCGGAAAAGGACAAG
GCGCGTAAGGCAAAGGAGGGCGAGACTGGAGAGCGCGCCGTTGGTCAGCCCCTGTCGCCAAAGGAGCAGCCCCCC
TTACCGGACAGCGAAGAGAAGAAGCTGCAGACGAGCGACGAAAAGTACAGGGATATGAGCAAGGCGAGGCCTTCT
GCCCAGGAAGACGACTCGTCTGATTATACAGGGCTCGGCAAGCCCGTTTACCTCCCCGATGTACCGCGCGAAGAT
TCGAATCCGTCGCCCAAGTCCAAGGCGAAAGATGGCGTCGACTTGGAAAATCCCACGACCGGCTCGCCGCGGAAG
ACGGGAGAAGCGAGTCGCGACGGAGACAAACGTGACGAGGACGGCATCATCCGGCCCTTTCACTCCTTCATCCTC
TCCCTGACCATGATACTCGTCTCCGAGGTGGGCGACAAGACATTCCTGGTAGCAGCACTGATGGCGATGAAGCAC
GACCGGCTCCTCGTCTTCTCAGCCGCCTTTGGCGCCCTCCTCGTCATGACGGTGCTATCAGCCCTGCTCGGCCAC
GCCGTACCGACATTGATCCCGAAACGGCTCACCAGCCTCCTCGCCGCCGTCCTCTTCTTCGTCTTCGGGCTCAAA
CTCCTACGCGAGGGTCTCAAGATGGACCCGGACGAGGGCGTGTCGGCCGAAATGGAAGAAGTAGAACAGGAACTG
GCCGACAAGGAAAAAGAACAACACCACGGAAATCAATACCGCCACGGCCGTCGTTCCCATCACCGTCACTCCGTC
TCCCCCCACGCCCTCGAGATGGGCCTCGGCAGCAAGCCGGTCCGCGGCTCCCGCTCCAAAGGCCGCTTCCCCTCC
CCGCCACGATCCCCCTCGCAATCGCCCTCCCGGCCTTCATCCCCTCGAGGCGGCCGATCGGTCGACGACTTGGTC
CACGGAGTCGGAAATCTTTGCTCGCTCCTGCTCAGCCCGGCTTGGGTGCAGACGTTCGCCATGACCTTTGTGGGC
GAGTGGGGTGATCGAAGTCAGATTGCGACTATAGCCATGGCGGCTGGACAGGATTATTGGTGGGTTACCCTCGGT
GCCATGTGCGGTCATGCTGTCTGTACCAGCGTTGCTGTTGTCGGTGGCCGTGCTATTGCTGGTCGTGTGAGCCTC
AAAGTCGTCACCGTCGGAGGCGCCCTCGCCTTTCTCATCTTCGCCTTCGTATATCTCATCGAAGCTCTACACGGA
TGA
Gene >Ophio5|3255
ATGAAGCTCCACGCCTGTAGGCGCTCGGCGCTTCCGCTACTGCTTCTACCGCTGCTGGTCCCCTCGCTGGCGGCC
AGCCTCAGGCCTGACCTGTCCACAGGCGTCCATGTTCGCGTTAAGCCGCGCCATGACATGCCGACCCGGGCGGCG
CCCGTCGACGGCAAGGATGGGAAGCCCCATTCCGGTCCCTTTGTCGAAAAGGCCGACTCGGATCGCAAAGGTCTG
CCTCCCCTTCGGGGCAGGCCTGTGGATGTCACCGTCGTCGATGGCATCAGGATTCCCAAGTCAAACGATGGTGTC
ATGTTCGATAGGAACCGCGAGCACGCGCAGGAGGGCACGACCGGCACCGAAGGCGGCGTTTCGGAAAAGGACAAG
GCGCGTAAGGCAAAGGAGGGCGAGACTGGAGAGCGCGCCGTTGGTCAGCCCCTGTCGCCAAAGGAGCAGCCCCCC
TTACCGGACAGCGAAGAGAAGAAGCTGCAGACGAGCGACGAAAAGTACAGGGATATGAGCAAGGCGAGGCCTTCT
GCCCAGGAAGACGACTCGTCTGATTATACAGGGCTCGGCGTATGTCTCAGTCGTCTTTTGCCATGTCGGCCCTGA
CCGTGCCGCTGACGGATTGGATAGAAGCCCGTTTACCTCCCCGATGTACCGCGCGAAGATTCGAATCCGTCGCCC
AAGTCCAAGGCGAAAGATGGCGTCGACTTGGAAAATCCCACGACCGGCTCGCCGCGGAAGACGGGAGAAGCGAGT
CGCGACGGAGACAAACGTGACGAGGACGGCATCATCCGGCCCTTTCACTCCTTCATCCTCTCCCTGACCATGATA
CTCGTCTCCGAGGTGGGCGACAAGACATTCCTGGTAGCAGCACTGATGGCGATGAAGCACGACCGGCTCCTCGTC
TTCTCAGCCGCCTTTGGCGCCCTCCTCGTCATGACGGTGCTATCAGCCCTGCTCGGCCACGCCGTACCGACATTG
ATCCCGAAACGGCTCACCAGCCTCCTCGCCGCCGTCCTCTTCTTCGTCTTCGGGCTCAAACTCCTACGCGAGGGT
CTCAAGATGGACCCGGACGAGGGCGTGTCGGCCGAAATGGAAGAAGTAGAACAGGAACTGGCCGACAAGGAAAAA
GAACAACACCACGGAAATCAATACCGCCACGGCCGTCGTTCCCATCACCGTCACTCCGTCTCCCCCCACGCCCTC
GAGATGGGCCTCGGCAGCAAGCCGGTCCGCGGCTCCCGCTCCAAAGGCCGCTTCCCCTCCCCGCCACGATCCCCC
TCGCAATCGCCCTCCCGGCCTTCATCCCCTCGAGGCGGCCGATCGGTCGACGACTTGGTCCACGGAGTCGGAAAT
CTTTGCTCGCTCCTGCTCAGCCCGGCTTGGGTGCAGACGTTCGCCATGACCTTTGTGGGCGAGTGGGGTGATCGA
AGTCAGATTGCGACTATAGCCATGGCGGCTGGACAGGATTATTGGTGGGTTACCCTCGGTGCCATGTGCGGTCAT
GCTGTCTGTACCAGCGTTGCTGTTGTCGGTGGCCGTGCTATTGCTGGTCGTGTGAGCCTCAAAGTCGGTGAGTAT
TTCTTCCCCCCCCTTCTCCCCCCCTTTTATCAACTACCTCATGTGCCTTGCAGGATGGGCTGACGCAGGTTATAA
AGTCACCGTCGGAGGCGCCCTCGCCTTTCTCATCTTCGCCTTCGTATATCTCATCGAAGCTCTACACGGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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