© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3253 |
| Gene name | |
| Location | scaffold_258:25777..26260 |
| Strand | - |
| Gene length (bp) | 483 |
| Transcript length (bp) | 483 |
| Coding sequence length (bp) | 480 |
| Protein length (aa) | 160 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide | 0.1087 | 0.2062 | 0.0556 | 0.0559 | 0.3463 | 0.0095 | 0.8981 | 0.3508 | 0.1412 | 0.1711 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 61 | 83 | 22 |
| 3 | 95 | 117 | 22 |
| 4 | 132 | 151 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 3507 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3253 MALQRVILRLPLAYRAFFLFIEPVSALAGAYYCHFRQDQYLELLLHGASTSSTSSPVPTTVSVALSQLANMYFFF ALIESLVLRCTWDLRVWRTVLLVLLIADFGHLYSLLELGSAVYYDGAGWNVSLFFNIPWVYAGATMRMCFLAGVG LQHSKRQKQQ |
| Coding | >Ophio5|3253 ATGGCTCTCCAACGCGTCATTCTCCGCCTCCCGCTCGCCTACCGCGCCTTCTTCCTCTTCATCGAGCCTGTTTCC GCTCTGGCCGGCGCATATTACTGTCACTTTCGCCAGGACCAGTATCTCGAGCTGCTGCTCCATGGCGCCTCTACT TCTTCTACCTCTTCACCCGTGCCGACGACGGTATCCGTCGCGTTGTCGCAACTAGCCAACATGTATTTCTTCTTC GCCCTTATCGAGTCGCTCGTTCTGCGCTGTACATGGGATCTGCGCGTCTGGCGTACCGTCTTGCTGGTGCTACTG ATCGCCGACTTTGGTCATCTCTATTCACTCTTGGAACTCGGTTCTGCCGTCTATTACGACGGTGCTGGCTGGAAT GTTAGCCTTTTCTTTAATATCCCTTGGGTTTATGCCGGGGCTACCATGAGGATGTGCTTCCTCGCTGGCGTCGGC CTGCAGCATTCTAAGCGGCAGAAGCAGCAA |
| Transcript | >Ophio5|3253 ATGGCTCTCCAACGCGTCATTCTCCGCCTCCCGCTCGCCTACCGCGCCTTCTTCCTCTTCATCGAGCCTGTTTCC GCTCTGGCCGGCGCATATTACTGTCACTTTCGCCAGGACCAGTATCTCGAGCTGCTGCTCCATGGCGCCTCTACT TCTTCTACCTCTTCACCCGTGCCGACGACGGTATCCGTCGCGTTGTCGCAACTAGCCAACATGTATTTCTTCTTC GCCCTTATCGAGTCGCTCGTTCTGCGCTGTACATGGGATCTGCGCGTCTGGCGTACCGTCTTGCTGGTGCTACTG ATCGCCGACTTTGGTCATCTCTATTCACTCTTGGAACTCGGTTCTGCCGTCTATTACGACGGTGCTGGCTGGAAT GTTAGCCTTTTCTTTAATATCCCTTGGGTTTATGCCGGGGCTACCATGAGGATGTGCTTCCTCGCTGGCGTCGGC CTGCAGCATTCTAAGCGGCAGAAGCAGCAATGA |
| Gene | >Ophio5|3253 ATGGCTCTCCAACGCGTCATTCTCCGCCTCCCGCTCGCCTACCGCGCCTTCTTCCTCTTCATCGAGCCTGTTTCC GCTCTGGCCGGCGCATATTACTGTCACTTTCGCCAGGACCAGTATCTCGAGCTGCTGCTCCATGGCGCCTCTACT TCTTCTACCTCTTCACCCGTGCCGACGACGGTATCCGTCGCGTTGTCGCAACTAGCCAACATGTATTTCTTCTTC GCCCTTATCGAGTCGCTCGTTCTGCGCTGTACATGGGATCTGCGCGTCTGGCGTACCGTCTTGCTGGTGCTACTG ATCGCCGACTTTGGTCATCTCTATTCACTCTTGGAACTCGGTTCTGCCGTCTATTACGACGGTGCTGGCTGGAAT GTTAGCCTTTTCTTTAATATCCCTTGGGTTTATGCCGGGGCTACCATGAGGATGTGCTTCCTCGCTGGCGTCGGC CTGCAGCATTCTAAGCGGCAGAAGCAGCAATGA |