© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3249 |
| Gene name | |
| Location | scaffold_258:18321..18990 |
| Strand | + |
| Gene length (bp) | 669 |
| Transcript length (bp) | 669 |
| Coding sequence length (bp) | 666 |
| Protein length (aa) | 222 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02150 | RNA_POL_M_15KD | RNA polymerases M/15 Kd subunit | 9.1E-13 | 24 | 60 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P27999|RPB9_YEAST | DNA-directed RNA polymerase II subunit RPB9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB9 PE=1 SV=1 | 23 | 88 | 6.0E-22 |
| sp|Q6FS48|RPB9_CANGA | DNA-directed RNA polymerase II subunit RPB9 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPB9 PE=3 SV=1 | 23 | 88 | 6.0E-22 |
| sp|Q755B3|RPB9_ASHGO | DNA-directed RNA polymerase II subunit RPB9 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPB9 PE=3 SV=1 | 23 | 88 | 1.0E-21 |
| sp|Q6NLH0|RPB9A_ARATH | DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana GN=NRPB9A PE=1 SV=1 | 23 | 99 | 9.0E-17 |
| sp|Q8L5V0|RPB9B_ARATH | DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana GN=NRPB9B PE=1 SV=1 | 23 | 99 | 1.0E-16 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P27999|RPB9_YEAST | DNA-directed RNA polymerase II subunit RPB9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB9 PE=1 SV=1 | 23 | 88 | 6.0E-22 |
| sp|Q6FS48|RPB9_CANGA | DNA-directed RNA polymerase II subunit RPB9 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPB9 PE=3 SV=1 | 23 | 88 | 6.0E-22 |
| sp|Q755B3|RPB9_ASHGO | DNA-directed RNA polymerase II subunit RPB9 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPB9 PE=3 SV=1 | 23 | 88 | 1.0E-21 |
| sp|Q6NLH0|RPB9A_ARATH | DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana GN=NRPB9A PE=1 SV=1 | 23 | 99 | 9.0E-17 |
| sp|Q8L5V0|RPB9B_ARATH | DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana GN=NRPB9B PE=1 SV=1 | 23 | 99 | 1.0E-16 |
| sp|Q32P73|RPB9_BOVIN | DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=2 SV=1 | 22 | 100 | 4.0E-16 |
| sp|P60899|RPB9_PIG | DNA-directed RNA polymerase II subunit RPB9 OS=Sus scrofa GN=POLR2I PE=3 SV=1 | 22 | 100 | 5.0E-16 |
| sp|P60898|RPB9_MOUSE | DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus GN=Polr2i PE=1 SV=1 | 22 | 100 | 5.0E-16 |
| sp|P36954|RPB9_HUMAN | DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1 | 22 | 100 | 5.0E-16 |
| sp|P36958|RPB9_DROME | DNA-directed RNA polymerase II subunit RPB9 OS=Drosophila melanogaster GN=RpII15 PE=2 SV=2 | 22 | 88 | 5.0E-15 |
| sp|O74635|RPB9_SCHPO | DNA-directed RNA polymerase II subunit RPB9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb9 PE=1 SV=1 | 24 | 88 | 4.0E-13 |
| sp|Q8SQU1|RPB9_ENCCU | DNA-directed RNA polymerase II subunit RPB9 OS=Encephalitozoon cuniculi (strain GB-M1) GN=RPB9 PE=3 SV=1 | 25 | 100 | 5.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | Yes |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0097659 | nucleic acid-templated transcription | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3249 MATPQSTTSQDDGSGAKKLEQITFRFCSECSNMLYPKEDKDAHSLQFTCRTCQYTEEASSSCVFRNVLNNSAGET AGVTQDVGSDPTVSDVLPVFCLTCGTVILCGQCNDSPAYMSVVKRQDKRDEDSGFDNYVLTAGIVPFTEYDEYFE GDDHNEAAAAAPDVSHAVNGNATVVSDLVPVSSGEKPDGTPAVNDTGLAPCVDRVMRNAMVLRGNGTPATHN |
| Coding | >Ophio5|3249 ATGGCCACTCCTCAGTCCACCACTTCGCAGGACGACGGCTCCGGCGCCAAGAAGCTCGAGCAGATCACCTTTCGA TTCTGCTCTGAGTGTTCCAACATGCTTTACCCCAAGGAAGACAAGGATGCTCACAGCCTTCAGTTTACTTGCCGC ACTTGCCAGTACACTGAGGAGGCTTCCTCCAGCTGCGTCTTCCGCAACGTTCTCAACAACTCGGCTGGCGAGACC GCTGGCGTGACGCAGGACGTGGGCTCTGATCCAACGGTTAGTGACGTTCTGCCTGTCTTTTGTCTCACTTGCGGC ACCGTCATTCTCTGCGGCCAGTGCAACGACTCGCCCGCCTACATGTCCGTCGTCAAGCGACAGGACAAGCGTGAT GAGGACTCGGGCTTCGACAATTATGTCCTTACCGCCGGCATCGTCCCTTTCACCGAGTACGACGAGTACTTCGAG GGTGATGACCACAACGAAGCCGCTGCAGCCGCTCCTGACGTGTCCCATGCCGTCAACGGCAATGCCACCGTCGTG AGCGACCTCGTCCCCGTCTCGAGCGGCGAGAAACCTGACGGAACCCCCGCCGTCAATGATACCGGCCTGGCCCCG TGCGTCGATAGGGTGATGCGCAACGCCATGGTCCTCCGTGGCAACGGGACCCCCGCCACCCACAAC |
| Transcript | >Ophio5|3249 ATGGCCACTCCTCAGTCCACCACTTCGCAGGACGACGGCTCCGGCGCCAAGAAGCTCGAGCAGATCACCTTTCGA TTCTGCTCTGAGTGTTCCAACATGCTTTACCCCAAGGAAGACAAGGATGCTCACAGCCTTCAGTTTACTTGCCGC ACTTGCCAGTACACTGAGGAGGCTTCCTCCAGCTGCGTCTTCCGCAACGTTCTCAACAACTCGGCTGGCGAGACC GCTGGCGTGACGCAGGACGTGGGCTCTGATCCAACGGTTAGTGACGTTCTGCCTGTCTTTTGTCTCACTTGCGGC ACCGTCATTCTCTGCGGCCAGTGCAACGACTCGCCCGCCTACATGTCCGTCGTCAAGCGACAGGACAAGCGTGAT GAGGACTCGGGCTTCGACAATTATGTCCTTACCGCCGGCATCGTCCCTTTCACCGAGTACGACGAGTACTTCGAG GGTGATGACCACAACGAAGCCGCTGCAGCCGCTCCTGACGTGTCCCATGCCGTCAACGGCAATGCCACCGTCGTG AGCGACCTCGTCCCCGTCTCGAGCGGCGAGAAACCTGACGGAACCCCCGCCGTCAATGATACCGGCCTGGCCCCG TGCGTCGATAGGGTGATGCGCAACGCCATGGTCCTCCGTGGCAACGGGACCCCCGCCACCCACAACTAA |
| Gene | >Ophio5|3249 ATGGCCACTCCTCAGTCCACCACTTCGCAGGACGACGGCTCCGGCGCCAAGAAGCTCGAGCAGATCACCTTTCGA TTCTGCTCTGAGTGTTCCAACATGCTTTACCCCAAGGAAGACAAGGATGCTCACAGCCTTCAGTTTACTTGCCGC ACTTGCCAGTACACTGAGGAGGCTTCCTCCAGCTGCGTCTTCCGCAACGTTCTCAACAACTCGGCTGGCGAGACC GCTGGCGTGACGCAGGACGTGGGCTCTGATCCAACGGTTAGTGACGTTCTGCCTGTCTTTTGTCTCACTTGCGGC ACCGTCATTCTCTGCGGCCAGTGCAACGACTCGCCCGCCTACATGTCCGTCGTCAAGCGACAGGACAAGCGTGAT GAGGACTCGGGCTTCGACAATTATGTCCTTACCGCCGGCATCGTCCCTTTCACCGAGTACGACGAGTACTTCGAG GGTGATGACCACAACGAAGCCGCTGCAGCCGCTCCTGACGTGTCCCATGCCGTCAACGGCAATGCCACCGTCGTG AGCGACCTCGTCCCCGTCTCGAGCGGCGAGAAACCTGACGGAACCCCCGCCGTCAATGATACCGGCCTGGCCCCG TGCGTCGATAGGGTGATGCGCAACGCCATGGTCCTCCGTGGCAACGGGACCCCCGCCACCCACAACTAA |