© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3246 |
| Gene name | |
| Location | scaffold_258:11995..13074 |
| Strand | - |
| Gene length (bp) | 1079 |
| Transcript length (bp) | 840 |
| Coding sequence length (bp) | 837 |
| Protein length (aa) | 279 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01328 | Peroxidase_2 | Peroxidase, family 2 | 5.6E-30 | 60 | 255 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P04963|PRXC_LEPFU | Chloroperoxidase OS=Leptoxyphium fumago GN=CPO PE=1 SV=3 | 56 | 158 | 3.0E-09 |
| sp|Q00668|STCC_EMENI | Putative sterigmatocystin biosynthesis peroxidase stcC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=stcC PE=3 SV=2 | 42 | 154 | 5.0E-08 |
| sp|B9W4V6|APO1_AGRAE | Aromatic peroxygenase OS=Agrocybe aegerita GN=APO1 PE=1 SV=1 | 34 | 183 | 2.0E-07 |
| sp|B9W4V8|APO1_COPRA | Aromatic peroxygenase (Fragments) OS=Coprinellus radians GN=APO PE=1 SV=2 | 59 | 101 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004601 | peroxidase activity | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | No |
| GO:0003674 | molecular_function | No |
| GO:0016209 | antioxidant activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 62.27 | 31.78 | 92.77 |
| CcL | In ants, during behavior modification | 30.51 | 13.25 | 47.77 |
| CcD | In ants, recently dead | 40.07 | 18.76 | 61.38 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.005848 | yes |
| SC16a | CcD | 0.080667 | no |
| CcL | CcD | 0.347372 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3246 MRLPAGWLLTLSLLICSAEAGIFDFIFGGPKKPPQAKVRKSGLPDAFIKAFEARQPVDNHEWKSPPSGAARGPCP ALNTLANHGYLRRDGKNITLAQVIDASFNAWLLLPDMTGLITARGIANSNHGLDHQFNLTITGHPSWRMEHDCSF SRLDRKEGNPIPFNQNVWFSSLFDLFGGSVFRLLTFQSTLITPRLLAKAKAARLRDIFKRCDYSGLAAAEGALEI GMVISALQENNKGAAKLSYVRGLFEQEKIVNDDDDDKGVEQNVFVVVHDVAEDD |
| Coding | >Ophio5|3246 ATGAGGCTCCCTGCAGGCTGGCTGCTTACCCTCTCTCTTCTGATCTGCTCGGCGGAGGCCGGAATCTTTGACTTC ATCTTTGGCGGTCCTAAGAAACCACCACAAGCCAAGGTTAGGAAATCCGGGTTACCGGATGCTTTTATCAAAGCG TTTGAGGCGCGACAGCCCGTCGATAACCATGAGTGGAAAAGTCCGCCGTCCGGAGCCGCTCGCGGGCCGTGTCCG GCTCTCAACACGCTGGCCAACCACGGCTACCTCCGACGGGACGGGAAGAACATCACGCTGGCACAAGTCATCGAC GCCTCCTTCAACGCCTGGCTGCTCCTCCCGGACATGACGGGGCTCATCACGGCGCGAGGCATCGCCAACAGCAAC CACGGCCTCGACCACCAGTTCAACCTGACCATCACGGGGCACCCATCGTGGAGGATGGAACACGACTGCAGCTTC TCGCGTCTGGACCGGAAGGAAGGCAACCCGATCCCCTTCAACCAAAACGTCTGGTTCTCCAGTCTATTCGACCTC TTCGGCGGCTCCGTCTTCCGTCTCCTCACTTTTCAATCCACCCTCATCACGCCCCGGCTCCTGGCCAAGGCCAAA GCGGCCCGTCTCCGCGACATATTCAAGAGATGCGATTACTCGGGCTTGGCAGCGGCCGAAGGTGCCCTCGAAATC GGCATGGTCATCAGCGCCCTGCAAGAGAATAATAAGGGCGCCGCCAAACTGAGCTATGTCCGAGGTCTCTTCGAA CAGGAGAAGATTGTGAACGATGATGATGATGATAAAGGCGTCGAGCAGAATGTTTTTGTCGTCGTCCACGACGTT GCAGAAGACGAC |
| Transcript | >Ophio5|3246 ATGAGGCTCCCTGCAGGCTGGCTGCTTACCCTCTCTCTTCTGATCTGCTCGGCGGAGGCCGGAATCTTTGACTTC ATCTTTGGCGGTCCTAAGAAACCACCACAAGCCAAGGTTAGGAAATCCGGGTTACCGGATGCTTTTATCAAAGCG TTTGAGGCGCGACAGCCCGTCGATAACCATGAGTGGAAAAGTCCGCCGTCCGGAGCCGCTCGCGGGCCGTGTCCG GCTCTCAACACGCTGGCCAACCACGGCTACCTCCGACGGGACGGGAAGAACATCACGCTGGCACAAGTCATCGAC GCCTCCTTCAACGCCTGGCTGCTCCTCCCGGACATGACGGGGCTCATCACGGCGCGAGGCATCGCCAACAGCAAC CACGGCCTCGACCACCAGTTCAACCTGACCATCACGGGGCACCCATCGTGGAGGATGGAACACGACTGCAGCTTC TCGCGTCTGGACCGGAAGGAAGGCAACCCGATCCCCTTCAACCAAAACGTCTGGTTCTCCAGTCTATTCGACCTC TTCGGCGGCTCCGTCTTCCGTCTCCTCACTTTTCAATCCACCCTCATCACGCCCCGGCTCCTGGCCAAGGCCAAA GCGGCCCGTCTCCGCGACATATTCAAGAGATGCGATTACTCGGGCTTGGCAGCGGCCGAAGGTGCCCTCGAAATC GGCATGGTCATCAGCGCCCTGCAAGAGAATAATAAGGGCGCCGCCAAACTGAGCTATGTCCGAGGTCTCTTCGAA CAGGAGAAGATTGTGAACGATGATGATGATGATAAAGGCGTCGAGCAGAATGTTTTTGTCGTCGTCCACGACGTT GCAGAAGACGACTGA |
| Gene | >Ophio5|3246 ATGAGGCTCCCTGCAGGCTGGCTGCTTACCCTCTCTCTTCTGATCTGCTCGGCGGAGGCCGGAATCTTTGACTTC ATCTTTGGCGGTCCTAAGAAACCACCACAAGCCAAGGTTAGGAAATCCGGGTTACCGGATGGTAAGAAGAAAAAC CGTTTCTTTCTCTCATTTATTTTTTTTTTCGAAGAAAAGGGATGAAGAAGACTGACCCCTTTTTTTAATTCTCTC TCTCTCTCTTTTGCGTCCACAGCTTTTATCAAAGCGTTTGAGGCGCGACAGCCCGTCGATAACCATGAGTGGAAA AGTCCGCCGTCCGGAGCCGGTACATACCGAACCCTTCCTCCCCCCCCCCCCAAAAGAGCGGGAAAAGGGGGAAAC AAAGGTCGCTGACGGAGAGCCATGACAGCTCGCGGGCCGTGTCCGGCTCTCAACACGCTGGCCAACCACGGCTAC CTCCGACGGGACGGGAAGAACATCACGCTGGCACAAGTCATCGACGCCTCCTTCAACGCCTGGCTGCTCCTCCCG GACATGACGGGGCTCATCACGGCGCGAGGCATCGCCAACAGCAACCACGGCCTCGACCACCAGTTCAACCTGACC ATCACGGGGCACCCATCGTGGAGGATGGAACACGACTGCAGCTTCTCGCGTCTGGACCGGAAGGAAGGCAACCCG ATCCCCTTCAACCAAAACGTCTGGTTCTCCAGTCTATTCGACCTCTTCGGCGGCTCCGTCTTCCGTCTCCTCACT TTTCAATCCACCCTCATCACGCCCCGGCTCCTGGCCAAGGCCAAAGCGGCCCGTCTCCGCGACATATTCAAGAGA TGCGATTACTCGGGCTTGGCAGCGGCCGAAGGTGCCCTCGAAATCGGCATGGTCATCAGCGCCCTGCAAGAGAAT AATAAGGGCGCCGCCAAACTGAGCTATGTCCGAGGTCTCTTCGAACAGGAGAAGATTGTGAACGATGATGATGAT GATAAAGGCGTCGAGCAGAATGTTTTTGTCGGTGGCATCTCCGGCACCTTGAAGCTGGCGCAGGACGCGTTGCAG TCGTCCACGACGTTGCAGAAGACGACTGA |