© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3244 |
| Gene name | |
| Location | scaffold_258:6552..8426 |
| Strand | + |
| Gene length (bp) | 1874 |
| Transcript length (bp) | 1740 |
| Coding sequence length (bp) | 1737 |
| Protein length (aa) | 579 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08375 | Rpn3_C | Proteasome regulatory subunit C-terminal | 2.4E-26 | 505 | 568 |
| PF01399 | PCI | PCI domain | 4.9E-20 | 400 | 498 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O42897|RPN3_SCHPO | Probable 26S proteasome regulatory subunit rpn3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn3 PE=3 SV=2 | 87 | 573 | 2.0E-140 |
| sp|P14685|PSMD3_MOUSE | 26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus GN=Psmd3 PE=1 SV=3 | 64 | 568 | 1.0E-124 |
| sp|O43242|PSMD3_HUMAN | 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2 | 64 | 568 | 2.0E-124 |
| sp|Q2KJ46|PSMD3_BOVIN | 26S proteasome non-ATPase regulatory subunit 3 OS=Bos taurus GN=PSMD3 PE=2 SV=1 | 90 | 568 | 3.0E-124 |
| sp|O61470|PSMD3_ANOGA | Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2 | 68 | 568 | 3.0E-121 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O42897|RPN3_SCHPO | Probable 26S proteasome regulatory subunit rpn3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn3 PE=3 SV=2 | 87 | 573 | 2.0E-140 |
| sp|P14685|PSMD3_MOUSE | 26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus GN=Psmd3 PE=1 SV=3 | 64 | 568 | 1.0E-124 |
| sp|O43242|PSMD3_HUMAN | 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2 | 64 | 568 | 2.0E-124 |
| sp|Q2KJ46|PSMD3_BOVIN | 26S proteasome non-ATPase regulatory subunit 3 OS=Bos taurus GN=PSMD3 PE=2 SV=1 | 90 | 568 | 3.0E-124 |
| sp|O61470|PSMD3_ANOGA | Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2 | 68 | 568 | 3.0E-121 |
| sp|Q9U5Z8|PSMD3_ANOST | Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1 | 68 | 569 | 1.0E-117 |
| sp|P25161|PSMD3_DROME | Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Drosophila melanogaster GN=Rpn3 PE=2 SV=1 | 62 | 568 | 2.0E-117 |
| sp|Q1ZXD3|PSMD3_DICDI | 26S proteasome non-ATPase regulatory subunit 3 OS=Dictyostelium discoideum GN=psmD3 PE=1 SV=1 | 67 | 576 | 3.0E-115 |
| sp|Q9LNU4|PSD3A_ARATH | 26S proteasome non-ATPase regulatory subunit 3 homolog A OS=Arabidopsis thaliana GN=RPN3A PE=1 SV=3 | 68 | 569 | 8.0E-91 |
| sp|P40016|RPN3_YEAST | 26S proteasome regulatory subunit RPN3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN3 PE=1 SV=5 | 98 | 576 | 3.0E-89 |
| sp|P93768|PSMD3_TOBAC | Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Nicotiana tabacum GN=21D7 PE=2 SV=1 | 168 | 569 | 2.0E-87 |
| sp|Q9LQR8|PSD3B_ARATH | 26S proteasome non-ATPase regulatory subunit 3 homolog B OS=Arabidopsis thaliana GN=RPN3B PE=1 SV=2 | 68 | 569 | 2.0E-86 |
| sp|Q06364|PSMD3_DAUCA | Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus carota GN=21D7 PE=1 SV=2 | 85 | 569 | 7.0E-86 |
| sp|Q04908|PSMD3_CAEEL | 26S proteasome non-ATPase regulatory subunit 3 OS=Caenorhabditis elegans GN=rpn-3 PE=1 SV=1 | 87 | 572 | 6.0E-82 |
| sp|Q8SRT7|RPN3_ENCCU | 26S proteasome regulatory subunit RPN3 OS=Encephalitozoon cuniculi (strain GB-M1) GN=RPN3 PE=1 SV=1 | 307 | 537 | 1.0E-13 |
| sp|O88543|CSN3_MOUSE | COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1 SV=3 | 329 | 534 | 6.0E-07 |
| sp|Q5RFS2|CSN3_PONAB | COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2 SV=1 | 329 | 534 | 1.0E-06 |
| sp|Q4R898|CSN3_MACFA | COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3 PE=2 SV=1 | 329 | 534 | 1.0E-06 |
| sp|Q9UNS2|CSN3_HUMAN | COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1 SV=3 | 329 | 534 | 1.0E-06 |
| sp|Q68FW9|CSN3_RAT | COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3 PE=1 SV=1 | 329 | 534 | 1.0E-06 |
| sp|A6H7B5|CSN3_BOVIN | COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1 | 329 | 534 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000502 | proteasome complex | Yes |
| GO:0030234 | enzyme regulator activity | Yes |
| GO:0042176 | regulation of protein catabolic process | Yes |
| GO:1905368 | peptidase complex | No |
| GO:0008150 | biological_process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0009894 | regulation of catabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:1905369 | endopeptidase complex | No |
| GO:1902494 | catalytic complex | No |
| GO:0003674 | molecular_function | No |
| GO:0051246 | regulation of protein metabolic process | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0098772 | molecular function regulator activity | No |
| GO:0005575 | cellular_component | No |
| GO:0050789 | regulation of biological process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 53 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3244 MPGKLPPSNGDQPLGNGVRSTNDDVDTKDAAKTKGKKAAKDGDDEMTVVLPPSKASKQPSQSQDSDGDVSMTDDT DAEVKVDPALQAVADIKSNFALLDRAVALFDARFSLRALRSISLIRKRLTPDIIGQAIVDTFPATVTSGNIAKHL LVAIGRESMPLGRQPGPEMEMDVDGKPAKNGAAKKEVKEIIPEIDIFLGILIQVYLFDSKQYQKGADFSRYLAER IQSLNRRTLDSLSAKAFFYYSLFCEHIAPLPPSPESPIVAIRPTLLAALRTAVLRKDIDTQASVIVLLLRNYLLT SHINQADLLVSHTQFPENAVNNQVARFLYYLGRIKAIQLRYTEAHEHLTAATRKAPSSGCAVGFSQTATKLLLVV ELLMGDIPDRATFRLPSLEAALHPYFLLVQAVRVGNLEDFETTIADHADTFRRDGTYTLILRLRQNVIKTGIRMM SLSYSRISLRDICIRLHLGSEESAEYIVAKAIRDGVIEATLDRERGFMKSNEIGDVYATREPGEAFHDRIQACLA LHNESVKAMRFPMNQHRLELKNAQEAREREREMAKEIQEGDLDEDDLGGDFEGM |
| Coding | >Ophio5|3244 ATGCCCGGAAAACTCCCCCCAAGCAACGGTGACCAACCGCTTGGGAACGGCGTCAGGAGCACCAACGACGATGTC GACACGAAGGACGCCGCAAAGACCAAGGGCAAAAAGGCCGCCAAGGATGGCGACGATGAGATGACCGTAGTGCTT CCTCCGTCCAAGGCATCCAAGCAACCCAGTCAATCGCAGGATTCTGATGGCGACGTTTCCATGACGGACGACACC GACGCAGAAGTCAAGGTCGATCCCGCCCTCCAGGCTGTGGCAGACATCAAGAGCAATTTTGCACTGCTTGACCGT GCCGTCGCTCTCTTCGATGCCAGATTTTCCCTCCGAGCCCTGCGTTCCATCTCTCTCATTCGCAAGCGCCTGACG CCCGACATCATCGGGCAGGCCATCGTCGACACTTTCCCCGCCACCGTGACGTCTGGAAACATTGCCAAGCATCTC CTGGTCGCTATCGGCCGCGAGAGCATGCCGCTCGGAAGGCAGCCTGGACCCGAGATGGAGATGGACGTCGATGGA AAGCCGGCAAAGAACGGCGCGGCCAAGAAGGAGGTCAAGGAAATCATCCCCGAAATCGACATCTTTCTCGGCATC CTCATCCAGGTGTACCTATTCGACAGCAAGCAGTACCAAAAGGGAGCCGACTTCTCCCGATATCTGGCCGAGCGA ATCCAGTCGCTCAACCGCCGCACGCTCGACTCCCTGTCCGCCAAGGCCTTTTTCTACTACTCCCTCTTCTGCGAG CACATTGCGCCGCTGCCGCCGTCTCCCGAGTCGCCCATCGTCGCCATCCGGCCGACGCTGCTCGCGGCCCTCCGG ACTGCCGTACTGCGCAAGGACATTGACACGCAGGCCTCGGTCATCGTCCTCCTCCTGCGTAATTACCTGCTGACG TCGCACATCAACCAGGCCGACCTGCTCGTCTCGCACACGCAGTTTCCGGAGAACGCCGTCAACAACCAGGTGGCC CGGTTCCTGTACTACCTCGGCAGGATCAAGGCGATCCAGCTTCGGTACACGGAGGCGCACGAGCACCTGACGGCG GCCACGCGCAAGGCGCCCTCGAGCGGCTGCGCCGTGGGCTTCTCGCAGACGGCGACCAAGCTCCTGCTGGTGGTG GAGCTGCTGATGGGTGACATCCCCGACCGAGCCACCTTTCGCCTGCCGTCGCTGGAGGCTGCCCTGCACCCCTAT TTCCTACTGGTGCAGGCCGTCCGCGTCGGCAACCTCGAGGACTTTGAGACGACCATTGCCGACCACGCCGACACG TTCCGACGCGACGGCACCTACACGCTGATCTTGCGCCTCCGACAGAACGTCATCAAGACGGGCATCCGCATGATG TCGCTTTCGTACTCACGCATCTCACTACGTGATATATGTATTCGGCTTCATCTGGGCAGTGAGGAGTCGGCCGAG TACATTGTGGCCAAAGCCATCCGAGATGGCGTCATCGAGGCCACGCTCGACCGAGAGCGCGGCTTCATGAAGAGC AACGAGATTGGCGACGTTTACGCGACGAGAGAACCCGGCGAGGCGTTCCACGATCGAATCCAAGCTTGTCTCGCG CTTCACAATGAGAGCGTCAAGGCCATGCGCTTCCCCATGAACCAACACCGTCTCGAACTTAAGAACGCCCAAGAA GCGAGAGAGCGCGAACGAGAGATGGCCAAGGAGATACAAGAAGGGGATCTGGACGAGGACGACCTCGGCGGCGAC TTTGAGGGCATG |
| Transcript | >Ophio5|3244 ATGCCCGGAAAACTCCCCCCAAGCAACGGTGACCAACCGCTTGGGAACGGCGTCAGGAGCACCAACGACGATGTC GACACGAAGGACGCCGCAAAGACCAAGGGCAAAAAGGCCGCCAAGGATGGCGACGATGAGATGACCGTAGTGCTT CCTCCGTCCAAGGCATCCAAGCAACCCAGTCAATCGCAGGATTCTGATGGCGACGTTTCCATGACGGACGACACC GACGCAGAAGTCAAGGTCGATCCCGCCCTCCAGGCTGTGGCAGACATCAAGAGCAATTTTGCACTGCTTGACCGT GCCGTCGCTCTCTTCGATGCCAGATTTTCCCTCCGAGCCCTGCGTTCCATCTCTCTCATTCGCAAGCGCCTGACG CCCGACATCATCGGGCAGGCCATCGTCGACACTTTCCCCGCCACCGTGACGTCTGGAAACATTGCCAAGCATCTC CTGGTCGCTATCGGCCGCGAGAGCATGCCGCTCGGAAGGCAGCCTGGACCCGAGATGGAGATGGACGTCGATGGA AAGCCGGCAAAGAACGGCGCGGCCAAGAAGGAGGTCAAGGAAATCATCCCCGAAATCGACATCTTTCTCGGCATC CTCATCCAGGTGTACCTATTCGACAGCAAGCAGTACCAAAAGGGAGCCGACTTCTCCCGATATCTGGCCGAGCGA ATCCAGTCGCTCAACCGCCGCACGCTCGACTCCCTGTCCGCCAAGGCCTTTTTCTACTACTCCCTCTTCTGCGAG CACATTGCGCCGCTGCCGCCGTCTCCCGAGTCGCCCATCGTCGCCATCCGGCCGACGCTGCTCGCGGCCCTCCGG ACTGCCGTACTGCGCAAGGACATTGACACGCAGGCCTCGGTCATCGTCCTCCTCCTGCGTAATTACCTGCTGACG TCGCACATCAACCAGGCCGACCTGCTCGTCTCGCACACGCAGTTTCCGGAGAACGCCGTCAACAACCAGGTGGCC CGGTTCCTGTACTACCTCGGCAGGATCAAGGCGATCCAGCTTCGGTACACGGAGGCGCACGAGCACCTGACGGCG GCCACGCGCAAGGCGCCCTCGAGCGGCTGCGCCGTGGGCTTCTCGCAGACGGCGACCAAGCTCCTGCTGGTGGTG GAGCTGCTGATGGGTGACATCCCCGACCGAGCCACCTTTCGCCTGCCGTCGCTGGAGGCTGCCCTGCACCCCTAT TTCCTACTGGTGCAGGCCGTCCGCGTCGGCAACCTCGAGGACTTTGAGACGACCATTGCCGACCACGCCGACACG TTCCGACGCGACGGCACCTACACGCTGATCTTGCGCCTCCGACAGAACGTCATCAAGACGGGCATCCGCATGATG TCGCTTTCGTACTCACGCATCTCACTACGTGATATATGTATTCGGCTTCATCTGGGCAGTGAGGAGTCGGCCGAG TACATTGTGGCCAAAGCCATCCGAGATGGCGTCATCGAGGCCACGCTCGACCGAGAGCGCGGCTTCATGAAGAGC AACGAGATTGGCGACGTTTACGCGACGAGAGAACCCGGCGAGGCGTTCCACGATCGAATCCAAGCTTGTCTCGCG CTTCACAATGAGAGCGTCAAGGCCATGCGCTTCCCCATGAACCAACACCGTCTCGAACTTAAGAACGCCCAAGAA GCGAGAGAGCGCGAACGAGAGATGGCCAAGGAGATACAAGAAGGGGATCTGGACGAGGACGACCTCGGCGGCGAC TTTGAGGGCATGTAG |
| Gene | >Ophio5|3244 ATGCCCGGAAAACTCCCCCCAAGCAACGGTGACCAACCGCTTGGGAACGGCGTCAGGAGCACCAACGACGATGTC GACACGAAGGACGCCGCAAAGACCAAGGGCAAAAAGGCCGCCAAGGATGGCGACGATGAGATGACCGTAGTGCTT CCTCCGTCCAAGGCATCCAAGCAACCCAGTCAATCGCAGGATTCTGATGGCGACGTTTCCATGACGGACGACACC GACGCAGAAGTCAAGGTCGATCCCGCCCTCCAGGCTGTGGCAGGTATGCCGGCAGACGCCACCACCCTTCCCTCT CCTACCTTGAGTCCGTGGCTGACTCGCCGTCGCAGACATCAAGAGCAATTTTGCACTGCTTGACCGTGCCGTCGC TCTCTTCGATGCCAGATTTTCCCTCCGAGCCCTGCGTTCCATCTCTCTCATTCGCAAGCGCCTGACGCCCGACAT CATCGGGCAGGCCATCGTCGACACTTTCCCCGCCACCGTGACGTCTGGAAACATTGCCAAGCATCTCCTGGTCGC TATCGGCCGCGAGAGCATGCCGCTCGGAAGGCAGCCTGGACCCGAGATGGAGATGGACGTCGATGGAAAGCCGGC AAAGAACGGCGCGGCCAAGAAGGAGGTCAAGGAAATCATCCCCGAAATCGACATCTTTCTCGGCATCCTCATCCA GGTGTACCTATTCGACAGCAAGCAGTACCAAAAGGGAGCCGACTTCTCCCGATATCTGGCCGAGCGAATCCAGTC GCTCAACCGCCGCACGCTCGACTCCCTGTCCGCCAAGGCCTTTTTCTACTACTCCCTCTTCTGCGAGCACATTGC GCCGCTGCCGCCGTCTCCCGAGTCGCCCATCGTCGCCATCCGGCCGACGCTGCTCGCGGCCCTCCGGACTGCCGT ACTGCGCAAGGACATTGACACGCAGGCCTCGGTCATCGTCCTCCTCCTGCGTAATTACCTGCTGACGTCGCACAT CAACCAGGCCGACCTGCTCGTCTCGCACACGCAGTTTCCGGAGAACGCCGTCAACAACCAGGTGGCCCGGTTCCT GTACTACCTCGGCAGGATCAAGGCGATCCAGCTTCGGTACACGGAGGCGCACGAGCACCTGACGGCGGCCACGCG CAAGGCGCCCTCGAGCGGCTGCGCCGTGGGCTTCTCGCAGACGGCGACCAAGCTCCTGCTGGTGGTGGAGCTGCT GATGGGTGACATCCCCGACCGAGCCACCTTTCGCCTGCCGTCGCTGGAGGCTGCCCTGCACCCCTATTTCCTACT GGTGCAGGCCGTCCGCGTCGGCAACCTCGAGGACTTTGAGACGACCATTGCCGACCACGCCGACACGTTCCGACG CGACGGCACCTACACGCTGATCTTGCGCCTCCGACAGAACGTCATCAAGACGGGCATCCGCATGATGTCGCTTTC GTACTCACGCATCTCACTACGTGATATATGTATTCGGCTTCATCTGGGCAGTGAGGAGTCGGCCGAGTACATTGT GGCCAAAGCCATCCGAGATGGCGTCATCGAGGCCACGCTCGACCGAGAGCGCGGCTTCATGAAGAGCAACGAGAT TGGCGACGTTTACGCGACGAGAGAACCCGGCGAGGCGTTCCACGATCGAATCCAAGCTTGTCTCGCGCTTCACAA TGAGAGCGTCAAGGTGAATCCTTTGCATGACGTCTCGTCTTTGGTCCTTTCTCTAACCCTGGAGCTCTTCCAACC TGCAGGCCATGCGCTTCCCCATGAACCAACACCGTCTCGAACTTAAGAACGCCCAAGAAGCGAGAGAGCGCGAAC GAGAGATGGCCAAGGAGATACAAGAAGGGGATCTGGACGAGGACGACCTCGGCGGCGACTTTGAGGGCATGTAG |