© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|324 |
| Gene name | |
| Location | scaffold_107:40973..43082 |
| Strand | - |
| Gene length (bp) | 2109 |
| Transcript length (bp) | 2049 |
| Coding sequence length (bp) | 2046 |
| Protein length (aa) | 682 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08573 | SAE2 | DNA endonuclease activator SAE2/CtIP C-terminus | 4.7E-38 | 534 | 647 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006281 | DNA repair | Yes |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0033554 | cellular response to stress | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006950 | response to stress | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 40.46 | 22.23 | 58.69 |
| CcL | In ants, during behavior modification | 51.48 | 25.73 | 77.23 |
| CcD | In ants, recently dead | 42.68 | 23.39 | 61.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.343540 | no |
| SC16a | CcD | 0.849033 | no |
| CcL | CcD | 0.468084 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|324 MAAADGNFRQALHAALDRMCDQLSRNLDAERDKNNRFLGQLLRLVKSGESVEQLLEKQLSGSHHETMEQSAAALQ MVQPQANPPSLDLFPASSAESNQLVALKAELSNLQRRFNALSANFSIAKEAIQERTSSRDKWVRHASYLEKIIAD AEQKHGVKIIYSKSRAPAATPKEHGPSPAPIPDTRPDDFQDASAGNEQRSALDVPAESTQGDSEEEQQLPQLPRQ QPCDVVSAQPASEHLSDIPVVVLERPVRKRRRNDSDPIAVKARVKAEPLDESSLISAIRSTSDTQQSLDLGDIAK KIVTPRKRKELAIPDSGYVSIASDPAIPLLKRFAVAATPGKPLYRTAHNRKGSVLTPLSVNVRAPAPDATDFKAR RPRRGTAHAISAVAEDGDVYRAHSPIARKQGVSSASPSNKGRLDMLLNSPSPAVNGSVLGRSADRRHADPEPRLP IPQRRELPFEKSSAQKSHLRSGLAGPPAYATPNRARPAPQKDGTRPAPQKDGSAASSLRKKPLSELRLEDFKINP QANDGYNFAFTEVVRDKAERTCLPGCTDAHCCGKQFAALARSQRPDPPLTPAQRVQEQKLLEEYLGEAAHRLASM TGPERADLWVEAKAHELANKYGKHRQRFSRPQSPPGFWNADFPSTQELVLDRAEAARRERLVVAERHREATRPGG RWLFKDE |
| Coding | >Ophio5|324 ATGGCGGCGGCCGACGGAAATTTCCGTCAGGCTCTTCACGCCGCTCTCGACCGAATGTGCGACCAGCTAAGTCGT AACCTCGACGCGGAGCGGGACAAGAACAACCGCTTCCTCGGCCAGCTGCTGCGATTGGTGAAAAGTGGCGAGTCT GTTGAACAACTCCTAGAAAAACAGCTTTCAGGCTCGCACCACGAGACGATGGAACAGTCCGCCGCCGCGTTGCAG ATGGTCCAGCCGCAAGCCAATCCTCCGTCGTTGGACCTGTTTCCGGCCTCGTCTGCCGAATCTAATCAATTGGTT GCTCTCAAGGCCGAACTCTCCAACCTCCAGCGCAGGTTCAACGCTCTCTCGGCAAACTTCAGCATCGCCAAAGAG GCGATTCAAGAGAGGACAAGCTCCCGCGACAAATGGGTTCGGCATGCATCGTACCTCGAAAAAATCATTGCCGAT GCTGAGCAGAAACATGGAGTCAAAATCATCTACAGCAAGAGTCGTGCTCCAGCCGCCACACCAAAGGAACATGGC CCTTCTCCCGCTCCTATTCCTGACACACGGCCAGACGACTTCCAAGATGCTTCCGCCGGCAATGAGCAGCGATCG GCCCTCGACGTGCCAGCAGAATCCACTCAAGGCGATTCCGAAGAGGAACAACAATTACCCCAACTGCCTCGCCAA CAACCTTGTGACGTCGTGTCTGCCCAGCCGGCATCAGAACATTTGTCCGATATACCAGTAGTGGTATTGGAGCGA CCCGTCCGAAAGAGAAGACGAAATGACTCCGACCCAATAGCAGTCAAAGCTCGAGTCAAGGCGGAACCATTAGAT GAATCCAGCCTCATCTCCGCTATACGCTCCACATCCGATACGCAACAAAGTCTCGATCTGGGAGACATCGCAAAG AAGATTGTGACGCCGCGAAAACGAAAGGAACTGGCAATTCCTGATTCAGGATACGTTAGCATCGCCTCGGACCCT GCCATACCTTTACTGAAGCGTTTCGCCGTGGCCGCCACGCCCGGAAAGCCACTATATCGAACGGCACACAACCGC AAGGGGTCGGTGCTGACGCCCTTGAGTGTTAATGTCCGGGCACCGGCTCCGGACGCTACCGATTTCAAGGCGCGC CGGCCTAGGAGAGGGACAGCTCACGCCATCTCCGCCGTGGCGGAAGACGGGGACGTGTACAGAGCCCATTCACCT ATCGCGAGGAAACAGGGCGTCTCTTCCGCCTCCCCATCCAACAAGGGCCGGCTGGACATGCTTCTCAATAGCCCG TCACCTGCCGTGAATGGTTCTGTCCTCGGTCGCTCAGCCGACAGACGGCACGCGGACCCGGAACCCCGCTTGCCG ATCCCTCAGCGTCGCGAGCTCCCGTTCGAAAAGAGCAGTGCACAAAAATCGCACCTGAGATCAGGACTGGCCGGT CCTCCAGCGTACGCAACCCCCAACCGCGCCCGGCCGGCCCCCCAGAAAGACGGAACCCGGCCGGCCCCCCAGAAA GACGGAAGTGCAGCATCAAGTCTACGAAAGAAGCCCCTATCCGAGTTGCGACTAGAGGACTTCAAAATCAACCCA CAAGCCAACGACGGCTACAACTTCGCCTTCACCGAAGTCGTCCGAGACAAAGCGGAGAGGACATGCCTCCCAGGC TGCACAGACGCTCACTGCTGCGGCAAGCAGTTCGCGGCCCTGGCTCGCTCCCAGCGGCCGGACCCGCCGCTCACG CCAGCCCAGCGCGTCCAAGAGCAGAAGTTGCTGGAGGAGTACCTCGGCGAGGCGGCTCATCGACTCGCTTCCATG ACGGGTCCCGAGAGGGCCGATCTCTGGGTCGAGGCCAAGGCTCACGAGTTGGCCAACAAGTACGGCAAGCATCGT CAGCGCTTCTCTCGCCCCCAGTCGCCTCCCGGCTTTTGGAATGCCGATTTCCCGTCCACGCAGGAGCTCGTGCTC GATCGTGCGGAGGCCGCTAGGAGGGAGAGGCTGGTGGTTGCTGAGAGGCATCGGGAGGCGACGAGGCCTGGTGGG AGGTGGTTGTTCAAAGATGAG |
| Transcript | >Ophio5|324 ATGGCGGCGGCCGACGGAAATTTCCGTCAGGCTCTTCACGCCGCTCTCGACCGAATGTGCGACCAGCTAAGTCGT AACCTCGACGCGGAGCGGGACAAGAACAACCGCTTCCTCGGCCAGCTGCTGCGATTGGTGAAAAGTGGCGAGTCT GTTGAACAACTCCTAGAAAAACAGCTTTCAGGCTCGCACCACGAGACGATGGAACAGTCCGCCGCCGCGTTGCAG ATGGTCCAGCCGCAAGCCAATCCTCCGTCGTTGGACCTGTTTCCGGCCTCGTCTGCCGAATCTAATCAATTGGTT GCTCTCAAGGCCGAACTCTCCAACCTCCAGCGCAGGTTCAACGCTCTCTCGGCAAACTTCAGCATCGCCAAAGAG GCGATTCAAGAGAGGACAAGCTCCCGCGACAAATGGGTTCGGCATGCATCGTACCTCGAAAAAATCATTGCCGAT GCTGAGCAGAAACATGGAGTCAAAATCATCTACAGCAAGAGTCGTGCTCCAGCCGCCACACCAAAGGAACATGGC CCTTCTCCCGCTCCTATTCCTGACACACGGCCAGACGACTTCCAAGATGCTTCCGCCGGCAATGAGCAGCGATCG GCCCTCGACGTGCCAGCAGAATCCACTCAAGGCGATTCCGAAGAGGAACAACAATTACCCCAACTGCCTCGCCAA CAACCTTGTGACGTCGTGTCTGCCCAGCCGGCATCAGAACATTTGTCCGATATACCAGTAGTGGTATTGGAGCGA CCCGTCCGAAAGAGAAGACGAAATGACTCCGACCCAATAGCAGTCAAAGCTCGAGTCAAGGCGGAACCATTAGAT GAATCCAGCCTCATCTCCGCTATACGCTCCACATCCGATACGCAACAAAGTCTCGATCTGGGAGACATCGCAAAG AAGATTGTGACGCCGCGAAAACGAAAGGAACTGGCAATTCCTGATTCAGGATACGTTAGCATCGCCTCGGACCCT GCCATACCTTTACTGAAGCGTTTCGCCGTGGCCGCCACGCCCGGAAAGCCACTATATCGAACGGCACACAACCGC AAGGGGTCGGTGCTGACGCCCTTGAGTGTTAATGTCCGGGCACCGGCTCCGGACGCTACCGATTTCAAGGCGCGC CGGCCTAGGAGAGGGACAGCTCACGCCATCTCCGCCGTGGCGGAAGACGGGGACGTGTACAGAGCCCATTCACCT ATCGCGAGGAAACAGGGCGTCTCTTCCGCCTCCCCATCCAACAAGGGCCGGCTGGACATGCTTCTCAATAGCCCG TCACCTGCCGTGAATGGTTCTGTCCTCGGTCGCTCAGCCGACAGACGGCACGCGGACCCGGAACCCCGCTTGCCG ATCCCTCAGCGTCGCGAGCTCCCGTTCGAAAAGAGCAGTGCACAAAAATCGCACCTGAGATCAGGACTGGCCGGT CCTCCAGCGTACGCAACCCCCAACCGCGCCCGGCCGGCCCCCCAGAAAGACGGAACCCGGCCGGCCCCCCAGAAA GACGGAAGTGCAGCATCAAGTCTACGAAAGAAGCCCCTATCCGAGTTGCGACTAGAGGACTTCAAAATCAACCCA CAAGCCAACGACGGCTACAACTTCGCCTTCACCGAAGTCGTCCGAGACAAAGCGGAGAGGACATGCCTCCCAGGC TGCACAGACGCTCACTGCTGCGGCAAGCAGTTCGCGGCCCTGGCTCGCTCCCAGCGGCCGGACCCGCCGCTCACG CCAGCCCAGCGCGTCCAAGAGCAGAAGTTGCTGGAGGAGTACCTCGGCGAGGCGGCTCATCGACTCGCTTCCATG ACGGGTCCCGAGAGGGCCGATCTCTGGGTCGAGGCCAAGGCTCACGAGTTGGCCAACAAGTACGGCAAGCATCGT CAGCGCTTCTCTCGCCCCCAGTCGCCTCCCGGCTTTTGGAATGCCGATTTCCCGTCCACGCAGGAGCTCGTGCTC GATCGTGCGGAGGCCGCTAGGAGGGAGAGGCTGGTGGTTGCTGAGAGGCATCGGGAGGCGACGAGGCCTGGTGGG AGGTGGTTGTTCAAAGATGAGTGA |
| Gene | >Ophio5|324 ATGGCGGCGGCCGACGGAAATTTCCGTCAGGCTCTTCACGCCGCTCTCGACCGAATGTGCGACCAGCTAAGTCGT AACCTCGACGCGGGTGAGTGCAACTCCAGAGTCCAGCCCCCGCGTCATGCACGACAAGGCTAAGGTCGTCCAGAG CGGGACAAGAACAACCGCTTCCTCGGCCAGCTGCTGCGATTGGTGAAAAGTGGCGAGTCTGTTGAACAACTCCTA GAAAAACAGCTTTCAGGCTCGCACCACGAGACGATGGAACAGTCCGCCGCCGCGTTGCAGATGGTCCAGCCGCAA GCCAATCCTCCGTCGTTGGACCTGTTTCCGGCCTCGTCTGCCGAATCTAATCAATTGGTTGCTCTCAAGGCCGAA CTCTCCAACCTCCAGCGCAGGTTCAACGCTCTCTCGGCAAACTTCAGCATCGCCAAAGAGGCGATTCAAGAGAGG ACAAGCTCCCGCGACAAATGGGTTCGGCATGCATCGTACCTCGAAAAAATCATTGCCGATGCTGAGCAGAAACAT GGAGTCAAAATCATCTACAGCAAGAGTCGTGCTCCAGCCGCCACACCAAAGGAACATGGCCCTTCTCCCGCTCCT ATTCCTGACACACGGCCAGACGACTTCCAAGATGCTTCCGCCGGCAATGAGCAGCGATCGGCCCTCGACGTGCCA GCAGAATCCACTCAAGGCGATTCCGAAGAGGAACAACAATTACCCCAACTGCCTCGCCAACAACCTTGTGACGTC GTGTCTGCCCAGCCGGCATCAGAACATTTGTCCGATATACCAGTAGTGGTATTGGAGCGACCCGTCCGAAAGAGA AGACGAAATGACTCCGACCCAATAGCAGTCAAAGCTCGAGTCAAGGCGGAACCATTAGATGAATCCAGCCTCATC TCCGCTATACGCTCCACATCCGATACGCAACAAAGTCTCGATCTGGGAGACATCGCAAAGAAGATTGTGACGCCG CGAAAACGAAAGGAACTGGCAATTCCTGATTCAGGATACGTTAGCATCGCCTCGGACCCTGCCATACCTTTACTG AAGCGTTTCGCCGTGGCCGCCACGCCCGGAAAGCCACTATATCGAACGGCACACAACCGCAAGGGGTCGGTGCTG ACGCCCTTGAGTGTTAATGTCCGGGCACCGGCTCCGGACGCTACCGATTTCAAGGCGCGCCGGCCTAGGAGAGGG ACAGCTCACGCCATCTCCGCCGTGGCGGAAGACGGGGACGTGTACAGAGCCCATTCACCTATCGCGAGGAAACAG GGCGTCTCTTCCGCCTCCCCATCCAACAAGGGCCGGCTGGACATGCTTCTCAATAGCCCGTCACCTGCCGTGAAT GGTTCTGTCCTCGGTCGCTCAGCCGACAGACGGCACGCGGACCCGGAACCCCGCTTGCCGATCCCTCAGCGTCGC GAGCTCCCGTTCGAAAAGAGCAGTGCACAAAAATCGCACCTGAGATCAGGACTGGCCGGTCCTCCAGCGTACGCA ACCCCCAACCGCGCCCGGCCGGCCCCCCAGAAAGACGGAACCCGGCCGGCCCCCCAGAAAGACGGAAGTGCAGCA TCAAGTCTACGAAAGAAGCCCCTATCCGAGTTGCGACTAGAGGACTTCAAAATCAACCCACAAGCCAACGACGGC TACAACTTCGCCTTCACCGAAGTCGTCCGAGACAAAGCGGAGAGGACATGCCTCCCAGGCTGCACAGACGCTCAC TGCTGCGGCAAGCAGTTCGCGGCCCTGGCTCGCTCCCAGCGGCCGGACCCGCCGCTCACGCCAGCCCAGCGCGTC CAAGAGCAGAAGTTGCTGGAGGAGTACCTCGGCGAGGCGGCTCATCGACTCGCTTCCATGACGGGTCCCGAGAGG GCCGATCTCTGGGTCGAGGCCAAGGCTCACGAGTTGGCCAACAAGTACGGCAAGCATCGTCAGCGCTTCTCTCGC CCCCAGTCGCCTCCCGGCTTTTGGAATGCCGATTTCCCGTCCACGCAGGAGCTCGTGCTCGATCGTGCGGAGGCC GCTAGGAGGGAGAGGCTGGTGGTTGCTGAGAGGCATCGGGAGGCGACGAGGCCTGGTGGGAGGTGGTTGTTCAAA GATGAGTGA |