Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|3212
Gene name
Location	scaffold_254:9965..11414
Strand	-
Gene length (bp)	1449
Transcript length (bp)	1368
Coding sequence length (bp)	1365
Protein length (aa)	455

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 44	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	406	428	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	47.38	25.52	69.24
CcL	In ants, during behavior modification	83.51	45.24	121.77
CcD	In ants, recently dead	80.17	43.46	116.88

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.010908	yes
SC16a	CcD	0.016750	yes
CcL	CcD	0.888055	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|3212 MTSVDEGSATGPFAATDSSLGETFRRSLLSSSLSAYSVGSSAGSSTAARRSSHISKTYRQASTLFLTRRLPEALT TLTPLIVPGDNGEPAPVAKASRTSRIKVWSLYLTILHAVVEMNPDDGKEAFGNQDWRALCAKVRDGLVWEEVVRD GYHGVEGDVDSDVVINLATLLLAHARDQTLNQRRLEAYLATSNTPDLDLTGQMDTSPVPRSHAGPRYRSPAPGTS GADTPRDLNARVKILELYTLHVLLRNNEWDYAREFISVSSVLDDERREAFLQALESLQEEQQEQERLERAERRRQ EEQLRRQIDDARRLRAENEEWERRRLDEARRTRRPSTEVDYGVQGSPTPDARLGSRPQQRTSRIPASSSGGKPAV PRTFTARAGMILSRLRAVLDGLAASLNGNPALLARLLAFVVGLLVLVGHGGIRHRIQRVLGASWTKFKATAGMGT KISYI
Coding	>Ophio5\|3212 ATGACGTCCGTCGACGAAGGCTCCGCCACCGGCCCTTTCGCCGCCACCGATTCTTCGTTGGGCGAGACCTTTCGG CGCAGCCTGCTCTCGTCCTCCCTCTCGGCCTACTCGGTCGGATCTTCGGCCGGCTCCTCGACGGCGGCCCGCCGT TCGTCGCACATATCCAAGACGTACCGTCAGGCCTCAACGCTCTTCCTGACCCGTCGTCTGCCCGAGGCTCTGACG ACGCTGACTCCCCTCATCGTCCCGGGCGACAACGGCGAGCCCGCGCCCGTGGCCAAGGCCTCACGCACGTCGCGC ATCAAGGTCTGGAGCCTTTACCTGACCATCCTCCATGCCGTCGTGGAGATGAACCCCGACGACGGTAAGGAGGCC TTTGGCAATCAGGATTGGAGGGCTCTATGCGCCAAGGTTCGAGACGGTCTCGTCTGGGAGGAGGTCGTGCGGGAC GGCTACCACGGCGTCGAGGGAGATGTCGACTCTGACGTCGTCATCAATCTGGCGACGCTCCTCTTGGCGCACGCG CGCGACCAGACCTTGAACCAGCGCAGGCTCGAGGCTTACCTGGCCACGTCTAACACGCCCGACCTCGACCTGACC GGCCAGATGGATACGTCGCCCGTTCCACGGTCCCATGCTGGGCCGCGATATCGGTCACCCGCTCCGGGCACGAGC GGCGCCGACACGCCGCGGGATCTCAACGCCCGGGTCAAGATACTGGAGCTGTACACGCTACACGTTCTGCTGCGC AACAACGAGTGGGACTACGCCCGCGAATTTATCAGCGTCAGCTCCGTCCTCGACGACGAGCGGCGCGAGGCCTTT CTCCAGGCCCTCGAGAGCCTGCAAGAGGAGCAGCAGGAACAAGAGCGGTTGGAACGGGCGGAGCGCCGCCGCCAA GAGGAGCAGCTGCGCCGCCAAATCGACGACGCGAGACGCTTGCGCGCCGAAAACGAAGAATGGGAGCGGAGACGA CTGGACGAGGCGCGTCGGACGCGGCGTCCCAGCACAGAGGTCGACTACGGCGTCCAAGGGAGTCCGACTCCCGAT GCCCGCCTTGGCAGCAGGCCGCAGCAGCGGACGTCGCGCATACCCGCCTCCTCATCTGGCGGTAAGCCCGCGGTG CCCAGGACGTTTACGGCGCGCGCGGGCATGATATTGTCCCGGCTACGGGCCGTCCTCGACGGGCTCGCCGCCTCG CTCAACGGGAATCCGGCCTTGTTGGCGAGGCTGCTCGCCTTTGTCGTCGGCCTGTTGGTCCTGGTAGGACACGGC GGCATCAGACATCGGATACAGCGCGTGCTGGGAGCGTCTTGGACCAAGTTCAAGGCTACGGCGGGCATGGGCACC AAGATCAGCTACATA
Transcript	>Ophio5\|3212 ATGACGTCCGTCGACGAAGGCTCCGCCACCGGCCCTTTCGCCGCCACCGATTCTTCGTTGGGCGAGACCTTTCGG CGCAGCCTGCTCTCGTCCTCCCTCTCGGCCTACTCGGTCGGATCTTCGGCCGGCTCCTCGACGGCGGCCCGCCGT TCGTCGCACATATCCAAGACGTACCGTCAGGCCTCAACGCTCTTCCTGACCCGTCGTCTGCCCGAGGCTCTGACG ACGCTGACTCCCCTCATCGTCCCGGGCGACAACGGCGAGCCCGCGCCCGTGGCCAAGGCCTCACGCACGTCGCGC ATCAAGGTCTGGAGCCTTTACCTGACCATCCTCCATGCCGTCGTGGAGATGAACCCCGACGACGGTAAGGAGGCC TTTGGCAATCAGGATTGGAGGGCTCTATGCGCCAAGGTTCGAGACGGTCTCGTCTGGGAGGAGGTCGTGCGGGAC GGCTACCACGGCGTCGAGGGAGATGTCGACTCTGACGTCGTCATCAATCTGGCGACGCTCCTCTTGGCGCACGCG CGCGACCAGACCTTGAACCAGCGCAGGCTCGAGGCTTACCTGGCCACGTCTAACACGCCCGACCTCGACCTGACC GGCCAGATGGATACGTCGCCCGTTCCACGGTCCCATGCTGGGCCGCGATATCGGTCACCCGCTCCGGGCACGAGC GGCGCCGACACGCCGCGGGATCTCAACGCCCGGGTCAAGATACTGGAGCTGTACACGCTACACGTTCTGCTGCGC AACAACGAGTGGGACTACGCCCGCGAATTTATCAGCGTCAGCTCCGTCCTCGACGACGAGCGGCGCGAGGCCTTT CTCCAGGCCCTCGAGAGCCTGCAAGAGGAGCAGCAGGAACAAGAGCGGTTGGAACGGGCGGAGCGCCGCCGCCAA GAGGAGCAGCTGCGCCGCCAAATCGACGACGCGAGACGCTTGCGCGCCGAAAACGAAGAATGGGAGCGGAGACGA CTGGACGAGGCGCGTCGGACGCGGCGTCCCAGCACAGAGGTCGACTACGGCGTCCAAGGGAGTCCGACTCCCGAT GCCCGCCTTGGCAGCAGGCCGCAGCAGCGGACGTCGCGCATACCCGCCTCCTCATCTGGCGGTAAGCCCGCGGTG CCCAGGACGTTTACGGCGCGCGCGGGCATGATATTGTCCCGGCTACGGGCCGTCCTCGACGGGCTCGCCGCCTCG CTCAACGGGAATCCGGCCTTGTTGGCGAGGCTGCTCGCCTTTGTCGTCGGCCTGTTGGTCCTGGTAGGACACGGC GGCATCAGACATCGGATACAGCGCGTGCTGGGAGCGTCTTGGACCAAGTTCAAGGCTACGGCGGGCATGGGCACC AAGATCAGCTACATATGA
Gene	>Ophio5\|3212 ATGACGTCCGTCGACGAAGGCTCCGCCACCGGCCCTTTCGCCGCCACCGATTCTTCGTTGGGCGAGACCTTTCGG CGCAGCCTGCTCTCGTCCTCCCTCTCGGCCTACTCGGTCGGATCTTCGGCCGGCTCCTCGACGGCGGCCCGCCGT TCGTCGCACATATCCAAGACGTACCGTCAGGCCTCAACGCTCTTCCTGACCCGTCGTCTGCCCGAGGCTCTGACG ACGCTGACTCCCCTCATCGTCCCGGGCGACAACGGCGAGCCCGCGCCCGTGGCCAAGGCCTCACGCACGTCGCGC ATCAAGGTCTGGAGCCTTTACCTGACCATCCTCCATGCCGTCGTGGAGATGAACCCCGACGACGGTAAGGAGGCC TTTGGCAATCAGGATTGGAGGGCTCTATGCGCCAAGGTTCGAGACGGTCTCGTCTGGGAGGAGGTCGTGCGGGAC GGCTACCACGGCGTCGAGGGAGATGTCGACTCTGACGTCGTCATCAATCTGTGAGTATTTGGCTCAGGCTTCTTG TCGCCTTGTCATTTTTTTCCTCCTTTTGGCCGTGCTGATGGATGTTATGCCACCAGGGCGACGCTCCTCTTGGCG CACGCGCGCGACCAGACCTTGAACCAGCGCAGGCTCGAGGCTTACCTGGCCACGTCTAACACGCCCGACCTCGAC CTGACCGGCCAGATGGATACGTCGCCCGTTCCACGGTCCCATGCTGGGCCGCGATATCGGTCACCCGCTCCGGGC ACGAGCGGCGCCGACACGCCGCGGGATCTCAACGCCCGGGTCAAGATACTGGAGCTGTACACGCTACACGTTCTG CTGCGCAACAACGAGTGGGACTACGCCCGCGAATTTATCAGCGTCAGCTCCGTCCTCGACGACGAGCGGCGCGAG GCCTTTCTCCAGGCCCTCGAGAGCCTGCAAGAGGAGCAGCAGGAACAAGAGCGGTTGGAACGGGCGGAGCGCCGC CGCCAAGAGGAGCAGCTGCGCCGCCAAATCGACGACGCGAGACGCTTGCGCGCCGAAAACGAAGAATGGGAGCGG AGACGACTGGACGAGGCGCGTCGGACGCGGCGTCCCAGCACAGAGGTCGACTACGGCGTCCAAGGGAGTCCGACT CCCGATGCCCGCCTTGGCAGCAGGCCGCAGCAGCGGACGTCGCGCATACCCGCCTCCTCATCTGGCGGTAAGCCC GCGGTGCCCAGGACGTTTACGGCGCGCGCGGGCATGATATTGTCCCGGCTACGGGCCGTCCTCGACGGGCTCGCC GCCTCGCTCAACGGGAATCCGGCCTTGTTGGCGAGGCTGCTCGCCTTTGTCGTCGGCCTGTTGGTCCTGGTAGGA CACGGCGGCATCAGACATCGGATACAGCGCGTGCTGGGAGCGTCTTGGACCAAGTTCAAGGCTACGGCGGGCATG GGCACCAAGATCAGCTACATATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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