Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3198
Gene name
Locationscaffold_253:10697..11405
Strand+
Gene length (bp)708
Transcript length (bp)600
Coding sequence length (bp)597
Protein length (aa) 199

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04800 NDUS4 NADH dehydrogenase ubiquinone Fe-S protein 4 4.1E-34 95 191

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P25711|NDUS4_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-21 PE=1 SV=2 1 199 7.0E-87
sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1 60 191 4.0E-18
sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1 60 191 4.0E-18
sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1 60 191 6.0E-18
sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2 SV=1 60 191 6.0E-18
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Swissprot ID Swissprot Description Start End E-value
sp|P25711|NDUS4_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-21 PE=1 SV=2 1 199 7.0E-87
sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1 60 191 4.0E-18
sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1 60 191 4.0E-18
sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1 60 191 6.0E-18
sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2 SV=1 60 191 6.0E-18
sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1 59 191 2.0E-17
sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1 76 191 2.0E-17
sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1 60 191 7.0E-17
sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3 76 191 8.0E-17
sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1 76 191 9.0E-16
sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1 84 186 3.0E-14
sp|Q8T1V6|NDUS4_DICDI NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Dictyostelium discoideum GN=ndufs4 PE=3 SV=2 64 188 5.0E-11
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GO

GO Term Description Terminal node
GO:0022900 electron transport chain Yes
GO:0005747 mitochondrial respiratory chain complex I Yes
GO:0098803 respiratory chain complex No
GO:0008150 biological_process No
GO:0098798 mitochondrial protein-containing complex No
GO:0032991 protein-containing complex No
GO:1902494 catalytic complex No
GO:0008152 metabolic process No
GO:0044237 cellular metabolic process No
GO:1990204 oxidoreductase complex No
GO:0009987 cellular process No
GO:0005575 cellular_component No
GO:0045271 respiratory chain complex I No
GO:0030964 NADH dehydrogenase complex No
GO:0098800 inner mitochondrial membrane protein complex No
GO:0006091 generation of precursor metabolites and energy No
GO:1902495 transmembrane transporter complex No
GO:1990351 transporter complex No
GO:0098796 membrane protein complex No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3198
MASIRSHSARRLWQTASASRTPRLCASRRFQSDVATRPDALPTVPTPNEPDYNIPPDKATSTFTPVPKQIQEGSE
DISLPAAVISGAPMELQARTVRIYKESKPATQSGDFRGRHWRMDWDILPKGHRWENELMGWQSSGDFMQGTHLNF
ETKEDAIQFADKQGYEYFVQEPSSRKFTPKAYANNFLYSPKKLKHIRTK
Coding >Ophio5|3198
ATGGCCTCAATCAGGAGCCATAGTGCCAGACGGCTATGGCAGACTGCCTCGGCCTCACGTACGCCTCGCCTCTGT
GCCTCTCGACGCTTCCAGAGCGACGTAGCAACTCGCCCGGATGCCCTCCCGACCGTTCCAACCCCGAATGAGCCA
GACTATAACATACCTCCCGACAAGGCCACCTCCACTTTCACTCCCGTACCGAAGCAGATCCAAGAGGGCAGCGAA
GATATATCTCTGCCCGCAGCCGTCATCTCCGGTGCCCCGATGGAACTCCAGGCTCGGACGGTCCGCATCTACAAG
GAGTCCAAACCCGCGACTCAATCTGGCGACTTCAGAGGACGCCACTGGCGGATGGATTGGGATATCCTTCCCAAA
GGTCACCGGTGGGAGAACGAGCTGATGGGTTGGCAGTCGTCGGGGGACTTTATGCAGGGCACCCATTTAAACTTC
GAAACCAAAGAGGACGCCATTCAGTTCGCCGACAAGCAGGGTTACGAGTATTTCGTCCAGGAACCCAGTTCACGC
AAATTCACGCCCAAGGCTTACGCCAACAACTTCCTCTACTCCCCCAAGAAGCTCAAGCATATTCGGACGAAA
Transcript >Ophio5|3198
ATGGCCTCAATCAGGAGCCATAGTGCCAGACGGCTATGGCAGACTGCCTCGGCCTCACGTACGCCTCGCCTCTGT
GCCTCTCGACGCTTCCAGAGCGACGTAGCAACTCGCCCGGATGCCCTCCCGACCGTTCCAACCCCGAATGAGCCA
GACTATAACATACCTCCCGACAAGGCCACCTCCACTTTCACTCCCGTACCGAAGCAGATCCAAGAGGGCAGCGAA
GATATATCTCTGCCCGCAGCCGTCATCTCCGGTGCCCCGATGGAACTCCAGGCTCGGACGGTCCGCATCTACAAG
GAGTCCAAACCCGCGACTCAATCTGGCGACTTCAGAGGACGCCACTGGCGGATGGATTGGGATATCCTTCCCAAA
GGTCACCGGTGGGAGAACGAGCTGATGGGTTGGCAGTCGTCGGGGGACTTTATGCAGGGCACCCATTTAAACTTC
GAAACCAAAGAGGACGCCATTCAGTTCGCCGACAAGCAGGGTTACGAGTATTTCGTCCAGGAACCCAGTTCACGC
AAATTCACGCCCAAGGCTTACGCCAACAACTTCCTCTACTCCCCCAAGAAGCTCAAGCATATTCGGACGAAATGA
Gene >Ophio5|3198
ATGGCCTCAATCAGGAGCCATAGTGCCAGACGGCTATGGCAGACTGCCTCGGCCTCACGTACGCCTCGCCTCTGT
GCCTCTCGACGCTTCCAGAGCGACGTAGCAACTCGCCCGGATGCCCTCCCGACCGTTCCAACCCCGAATGAGCCA
GACTATAACATACCTCCCGACAAGGCCACCTCGTGCGCTCATCGCCATCACCGAGACTCGTACAGGAGCTGACAG
CGGTGCCCAGCACTTTCACTCCCGTACCGAAGCAGATCCAAGAGGGCAGCGAAGATATATCTCTGCCCGCAGCCG
TCATCTCCGGTGCCCCGATGGAACTCCAGGCTCGGACGGTCCGGTTAGTTTCGCCTCTGTCGCCACATTTTGATG
CGCAGCGTCTGACGTACCCACAGCATCTACAAGGAGTCCAAACCCGCGACTCAATCTGGCGACTTCAGAGGACGC
CACTGGCGGATGGATTGGGATATCCTTCCCAAAGGTCACCGGTGGGAGAACGAGCTGATGGGTTGGCAGTCGTCG
GGGGACTTTATGCAGGGCACCCATTTAAACTTCGAAACCAAAGAGGACGCCATTCAGTTCGCCGACAAGCAGGGT
TACGAGTATTTCGTCCAGGAACCCAGTTCACGCAAATTCACGCCCAAGGCTTACGCCAACAACTTCCTCTACTCC
CCCAAGAAGCTCAAGCATATTCGGACGAAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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