Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3118
Gene name
Locationscaffold_249:4272..4589
Strand-
Gene length (bp)317
Transcript length (bp)246
Coding sequence length (bp)243
Protein length (aa) 81

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 34 0.5

Transmembrane Domains

Domain # Start End Length
1 12 34 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3118
MRKILLTSSEVSVLATLMTVVFCTLALFLSGYAIQQRTLRDLRAAIRPHESARADRMPERIRRMEXXXXXXXXXX
WWWALS
Coding >Ophio5|3118
ATGCGCAAAATACTCCTCACCTCATCCGAGGTCTCGGTGCTGGCGACTCTGATGACCGTGGTGTTCTGCACGCTG
GCGCTGTTCCTCAGCGGGTACGCTATCCAACAGCGTACGCTGCGGGACTTGCGCGCTGCTATCCGTCCGCACGAG
TCGGCCCGGGCGGACAGAATGCCGGAGAGGATTCGGAGGATGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
TGGTGGTGGGCGTTGAGC
Transcript >Ophio5|3118
ATGCGCAAAATACTCCTCACCTCATCCGAGGTCTCGGTGCTGGCGACTCTGATGACCGTGGTGTTCTGCACGCTG
GCGCTGTTCCTCAGCGGGTACGCTATCCAACAGCGTACGCTGCGGGACTTGCGCGCTGCTATCCGTCCGCACGAG
TCGGCCCGGGCGGACAGAATGCCGGAGAGGATTCGGAGGATGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
TGGTGGTGGGCGTTGAGCTGA
Gene >Ophio5|3118
ATGCGCAAAATACTCCTCACCTCATCCGAGGTCTCGGTGCTGGCGACTCTGATGACCGGTAACTTTCCCATGCAG
CTTCCGAACGAACTTGGCTGATTGAAAGGGGGGGGGGGGGGAACGTTGTGTTAGTGGTGTTCTGCACGCTGGCGC
TGTTCCTCAGCGGGTACGCTATCCAACAGCGTACGCTGCGGGACTTGCGCGCTGCTATCCGTCCGCACGAGTCGG
CCCGGGCGGACAGAATGCCGGAGAGGATTCGGAGGATGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGGT
GGTGGGCGTTGAGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail