© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3104 |
| Gene name | |
| Location | scaffold_247:17905..19554 |
| Strand | - |
| Gene length (bp) | 1649 |
| Transcript length (bp) | 1353 |
| Coding sequence length (bp) | 1350 |
| Protein length (aa) | 450 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.3E-13 | 28 | 352 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P11551|FUCP_ECOLI | L-fucose-proton symporter OS=Escherichia coli (strain K12) GN=fucP PE=1 SV=3 | 15 | 384 | 1.0E-55 |
| sp|P0C105|GLUP_BRUAB | Glucose/galactose transporter OS=Brucella abortus biovar 1 (strain 9-941) GN=gluP PE=3 SV=1 | 7 | 392 | 2.0E-50 |
| sp|Q2YIJ8|GLUP_BRUA2 | Glucose/galactose transporter OS=Brucella abortus (strain 2308) GN=gluP PE=3 SV=1 | 7 | 392 | 2.0E-50 |
| sp|Q8YB48|GLUP_BRUME | Glucose/galactose transporter OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=gluP PE=3 SV=1 | 7 | 392 | 1.0E-48 |
| sp|P44776|FUCP_HAEIN | L-fucose permease OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=fucP PE=3 SV=1 | 10 | 388 | 1.0E-36 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P11551|FUCP_ECOLI | L-fucose-proton symporter OS=Escherichia coli (strain K12) GN=fucP PE=1 SV=3 | 15 | 384 | 1.0E-55 |
| sp|P0C105|GLUP_BRUAB | Glucose/galactose transporter OS=Brucella abortus biovar 1 (strain 9-941) GN=gluP PE=3 SV=1 | 7 | 392 | 2.0E-50 |
| sp|Q2YIJ8|GLUP_BRUA2 | Glucose/galactose transporter OS=Brucella abortus (strain 2308) GN=gluP PE=3 SV=1 | 7 | 392 | 2.0E-50 |
| sp|Q8YB48|GLUP_BRUME | Glucose/galactose transporter OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=gluP PE=3 SV=1 | 7 | 392 | 1.0E-48 |
| sp|P44776|FUCP_HAEIN | L-fucose permease OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=fucP PE=3 SV=1 | 10 | 388 | 1.0E-36 |
| sp|O25788|GLUP_HELPY | Putative glucose/galactose transporter OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=gluP PE=3 SV=1 | 25 | 380 | 9.0E-30 |
| sp|Q9ZK41|GLUP_HELPJ | Putative glucose/galactose transporter OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=gluP PE=3 SV=1 | 25 | 380 | 5.0E-29 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 39 | 19 |
| 2 | 83 | 105 | 22 |
| 3 | 112 | 131 | 19 |
| 4 | 151 | 173 | 22 |
| 5 | 186 | 208 | 22 |
| 6 | 237 | 259 | 22 |
| 7 | 300 | 319 | 19 |
| 8 | 323 | 345 | 22 |
| 9 | 357 | 379 | 22 |
| 10 | 383 | 405 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 48.76 | 26.18 | 71.35 |
| CcL | In ants, during behavior modification | 197.45 | 81.00 | 313.90 |
| CcD | In ants, recently dead | 101.21 | 54.90 | 147.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.008271 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3104 MFQHRDSSPRAELTGRQSLYPVCLVTSLFFLWGFSYGLLDTLNKHFQDTLGIGKSRSAGLQAAYFGAYPLASLGH AAWTLQRFGYRATFVWGLCLYGLGAVLAIPAIKCRSFGGFCACIFVIGSGLGSLETAANPYMGACGPARYSEIRL NIAQAFSGVGSVVAPVVGSFAFFRLDAEGALQNVQWIYLAVALLVFALAVIFFISDIPEAYEDDDETMAKGDNGG LTSSQRWRLLHAALAQFCCTGAQIAIAGYFINYVTETRPRTRPALASQLLAGAQGAFALGRFVGAALMRFIRPRV VLCAFTTLSVALVAPAVALRGNSGVLVICLSMFFESVCFPTIVALGIRGLGRHSRRGSGYVVGGIVGGACVPPLM GAVADARGTAMGMTVPLGFLAAGWTYALAVNAVPAYRAVIDGGNSVESDSEGDGEPVMERSGEGVLELGRRWRRG |
| Coding | >Ophio5|3104 ATGTTCCAACATCGAGACTCTTCCCCACGCGCCGAGCTCACGGGCCGTCAGTCGTTGTATCCCGTCTGTCTCGTC ACCAGCCTCTTCTTCCTTTGGGGTTTCTCCTACGGCCTTCTTGACACGCTCAACAAGCACTTTCAAGACACGCTG GGCATTGGCAAGTCACGATCTGCCGGTCTTCAAGCCGCCTACTTTGGAGCATACCCCCTGGCCTCGCTCGGTCAT GCCGCCTGGACCTTGCAGCGGTTCGGTTACCGCGCCACCTTTGTCTGGGGCCTCTGTCTCTACGGCCTGGGGGCC GTCTTGGCCATTCCAGCCATCAAGTGTCGGAGCTTCGGTGGTTTCTGCGCCTGCATCTTCGTTATTGGTAGCGGA CTGGGCTCTCTCGAGACGGCTGCGAATCCGTACATGGGTGCTTGCGGTCCTGCACGATACTCCGAGATACGGCTC AACATTGCGCAAGCCTTTAGCGGCGTAGGATCCGTCGTCGCTCCCGTCGTCGGCTCCTTCGCCTTCTTCCGGCTG GATGCTGAGGGCGCGCTACAAAATGTTCAGTGGATCTACCTGGCTGTTGCCCTGCTCGTTTTTGCCCTCGCCGTC ATCTTCTTCATATCTGACATCCCCGAGGCGTACGAAGACGATGATGAAACGATGGCCAAGGGCGACAACGGCGGG CTGACATCGTCGCAACGATGGCGTCTTTTGCACGCGGCGTTGGCCCAGTTTTGCTGTACGGGCGCGCAGATTGCC ATTGCCGGATACTTCATCAACTACGTGACGGAGACGCGACCTCGGACAAGACCGGCGCTGGCCTCGCAGCTCCTG GCAGGTGCTCAAGGGGCCTTTGCCTTGGGTCGTTTTGTCGGCGCGGCACTGATGCGCTTCATCCGTCCGCGGGTA GTTCTATGCGCTTTCACGACGCTGAGCGTCGCCCTGGTCGCTCCCGCCGTGGCCCTGCGCGGAAACTCGGGCGTC CTGGTCATCTGTCTGTCCATGTTCTTCGAGTCAGTATGCTTTCCAACCATCGTGGCGCTGGGGATCCGGGGCCTG GGCCGGCACAGCCGTCGAGGCTCCGGCTATGTCGTGGGCGGCATCGTGGGCGGTGCCTGCGTGCCGCCGCTTATG GGGGCTGTGGCAGATGCCAGGGGCACGGCTATGGGCATGACGGTGCCTTTGGGATTCCTCGCTGCCGGTTGGACG TATGCGCTGGCGGTGAATGCGGTGCCGGCCTATCGGGCTGTTATTGATGGGGGAAACAGCGTGGAGTCTGACTCA GAGGGGGACGGGGAGCCTGTCATGGAGAGGAGTGGGGAGGGCGTGTTGGAGCTGGGGAGGCGTTGGCGTCGGGGA |
| Transcript | >Ophio5|3104 ATGTTCCAACATCGAGACTCTTCCCCACGCGCCGAGCTCACGGGCCGTCAGTCGTTGTATCCCGTCTGTCTCGTC ACCAGCCTCTTCTTCCTTTGGGGTTTCTCCTACGGCCTTCTTGACACGCTCAACAAGCACTTTCAAGACACGCTG GGCATTGGCAAGTCACGATCTGCCGGTCTTCAAGCCGCCTACTTTGGAGCATACCCCCTGGCCTCGCTCGGTCAT GCCGCCTGGACCTTGCAGCGGTTCGGTTACCGCGCCACCTTTGTCTGGGGCCTCTGTCTCTACGGCCTGGGGGCC GTCTTGGCCATTCCAGCCATCAAGTGTCGGAGCTTCGGTGGTTTCTGCGCCTGCATCTTCGTTATTGGTAGCGGA CTGGGCTCTCTCGAGACGGCTGCGAATCCGTACATGGGTGCTTGCGGTCCTGCACGATACTCCGAGATACGGCTC AACATTGCGCAAGCCTTTAGCGGCGTAGGATCCGTCGTCGCTCCCGTCGTCGGCTCCTTCGCCTTCTTCCGGCTG GATGCTGAGGGCGCGCTACAAAATGTTCAGTGGATCTACCTGGCTGTTGCCCTGCTCGTTTTTGCCCTCGCCGTC ATCTTCTTCATATCTGACATCCCCGAGGCGTACGAAGACGATGATGAAACGATGGCCAAGGGCGACAACGGCGGG CTGACATCGTCGCAACGATGGCGTCTTTTGCACGCGGCGTTGGCCCAGTTTTGCTGTACGGGCGCGCAGATTGCC ATTGCCGGATACTTCATCAACTACGTGACGGAGACGCGACCTCGGACAAGACCGGCGCTGGCCTCGCAGCTCCTG GCAGGTGCTCAAGGGGCCTTTGCCTTGGGTCGTTTTGTCGGCGCGGCACTGATGCGCTTCATCCGTCCGCGGGTA GTTCTATGCGCTTTCACGACGCTGAGCGTCGCCCTGGTCGCTCCCGCCGTGGCCCTGCGCGGAAACTCGGGCGTC CTGGTCATCTGTCTGTCCATGTTCTTCGAGTCAGTATGCTTTCCAACCATCGTGGCGCTGGGGATCCGGGGCCTG GGCCGGCACAGCCGTCGAGGCTCCGGCTATGTCGTGGGCGGCATCGTGGGCGGTGCCTGCGTGCCGCCGCTTATG GGGGCTGTGGCAGATGCCAGGGGCACGGCTATGGGCATGACGGTGCCTTTGGGATTCCTCGCTGCCGGTTGGACG TATGCGCTGGCGGTGAATGCGGTGCCGGCCTATCGGGCTGTTATTGATGGGGGAAACAGCGTGGAGTCTGACTCA GAGGGGGACGGGGAGCCTGTCATGGAGAGGAGTGGGGAGGGCGTGTTGGAGCTGGGGAGGCGTTGGCGTCGGGGA TAG |
| Gene | >Ophio5|3104 ATGTTCCAACATCGAGACTCTTCCCCACGCGCCGAGCTCACGGGCCGTCAGTCGTTGTATCCCGTCTGTCTCGTC ACCAGCCTCTTCTTCCTTTGGGGTTTCTCCTACGGCCTTCTTGACACGCTCAACAAGCACTTTCAAGACACGCTG GGCATTGGCAAGTCACGATCTGCCGGTCTTCAAGCCGCCTACTTTGGGTGTGTACATTCTTCGTCCTCCTTCTCC TCCTCTTTCTTATCTTCTTCTCGGATCCTGACTCCTCCCCCACATGTAGAGCATACCCCCTGGCCTCGCTCGGTC ATGCCGCCTGGACCTTGCAGCGGTTCGGTTACCGCGCCACCTTTGTCTGGGGCCTCTGTCTCTACGGTATGTGCC GGGAATGGCCCTGTTTCTATCTAGCCTTGGCTCACGCGATGCTCGACCCGCTCCAGGCCTGGGGGCCGTCTTGGC CATTCCAGCCATCAAGTGTCGGAGCTTCGGTGGTTTCTGCGCCTGCATCTTCGTTATTGGTAGCGGACTGGGCTC TCTCGAGACGGCTGCGAATCCGTACATGGGTGGTGCGTGTATTCCATCCCATTTCCCCCCCTTTCTCTGTCTCTA CTCAATCTTTTATAGTCGGACGCTGGCTGAAGAAGCTCTAGCTTGCGGTCCTGCACGATACTCCGAGATACGGCT CAACATTGCGCAAGCCTTTAGCGGCGTAGGATCCGTCGTCGCTCCCGTCGTCGGCTCCTTCGCCTTCTTCCGGCT GGATGCTGAGGGCGCGCTACAAAATGTTCAGTGGATCTACCTGGCTGTTGCCCTGCTCGTTTTTGCCCTCGCCGT CATCTTCTTCATATCTGACATCCCCGAGGCGTACGAAGACGATGATGAAACGATGGCCAAGGGCGACAACGGCGG GCTGACATCGTCGCAACGATGGCGTCTTTTGCACGCGGCGTTGGCCCAGTTTTGCTGTACGGGCGCGCAGATTGC CATTGCCGGGTAAGAAGGCTGCATCGTGAAAAGAAGTCGGTCGAGAATACTGAAGAGCAATGTCCCTTGCTTCGC ACAGATACTTCATCAACTACGTGACGGAGACGCGACCTCGGACAAGACCGGCGCTGGCCTCGCAGCTCCTGGCAG GTGCTCAAGGGGCCTTTGCCTTGGGTCGTTTTGTCGGCGCGGCACTGATGCGCTTCATCCGTCCGCGGGTAGTTC TATGCGCTTTCACGACGCTGAGCGTCGCCCTGGTCGCTCCCGCCGTGGCCCTGCGCGGAAACTCGGGCGTCCTGG TCATCTGTCTGTCCATGTTCTTCGAGTCAGTATGCTTTCCAACCATCGTGGCGCTGGGGATCCGGGGCCTGGGCC GGCACAGCCGTCGAGGCTCCGGCTATGTCGTGGGCGGCATCGTGGGCGGTGCCTGCGTGCCGCCGCTTATGGGGG CTGTGGCAGATGCCAGGGGCACGGCTATGGGCATGACGGTGCCTTTGGGATTCCTCGCTGCCGGTTGGACGTATG CGCTGGCGGTGAATGCGGTGCCGGCCTATCGGGCTGTTATTGATGGGGGAAACAGCGTGGAGTCTGACTCAGAGG GGGACGGGGAGCCTGTCATGGAGAGGAGTGGGGAGGGCGTGTTGGAGCTGGGGAGGCGTTGGCGTCGGGGATAG |