© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|31 |
| Gene name | |
| Location | scaffold_1:70539..71343 |
| Strand | + |
| Gene length (bp) | 804 |
| Transcript length (bp) | 696 |
| Coding sequence length (bp) | 693 |
| Protein length (aa) | 231 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1286 | 0.1617 | 0.4004 | 0.5211 | 0.0993 | 0.006 | 0.1673 | 0.5384 | 0.248 | 0.0262 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 142 | 164 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3992 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|31 MAAQAPITTIPPFTDVARLPDCAKSCGPLYDANGACVPPAAPQSDAAAYTACFCSHAKVAPFSRGTAGVCDAACT ANQAGLQSIASWFQGICKPPVAAPPPANNPNGLPGNVRESNPDQGSSNSPTVPANTGGGDWLSHHWQWVIMLVVL VVGIAGIWIGACIWRRRYLRNKDQLMLSQRRPHVAASPSWGPAIAGSESATPMTFVADSERSLPEKPKSKDKAKW TVTQRT |
| Coding | >Ophio5|31 ATGGCGGCCCAGGCTCCCATCACCACCATCCCCCCCTTCACAGATGTCGCCAGACTCCCCGACTGCGCAAAGAGC TGCGGCCCGCTCTACGACGCCAACGGCGCCTGCGTTCCCCCCGCCGCTCCCCAATCCGACGCTGCCGCCTATACC GCCTGCTTCTGCAGCCATGCCAAGGTGGCCCCCTTCTCACGAGGCACCGCCGGAGTCTGCGACGCCGCCTGTACC GCCAACCAGGCCGGCCTTCAGTCCATCGCAAGCTGGTTCCAGGGCATCTGCAAGCCTCCCGTCGCCGCCCCGCCC CCCGCCAACAACCCCAACGGCCTCCCCGGGAACGTGCGTGAGAGCAACCCTGATCAGGGTTCGTCAAACAGCCCT ACCGTCCCTGCCAACACCGGAGGTGGTGACTGGCTTTCCCATCACTGGCAATGGGTCATCATGCTCGTCGTTCTC GTCGTTGGCATCGCTGGCATCTGGATCGGCGCCTGCATTTGGCGCAGGCGCTACCTCCGCAACAAGGACCAGCTG ATGCTCAGCCAGAGACGGCCCCACGTCGCCGCCAGCCCGTCTTGGGGTCCTGCCATTGCCGGCTCCGAGTCCGCC ACACCCATGACTTTCGTGGCCGACTCGGAGAGGTCCTTGCCTGAGAAGCCCAAGAGCAAGGACAAGGCCAAATGG ACCGTTACCCAACGGACA |
| Transcript | >Ophio5|31 ATGGCGGCCCAGGCTCCCATCACCACCATCCCCCCCTTCACAGATGTCGCCAGACTCCCCGACTGCGCAAAGAGC TGCGGCCCGCTCTACGACGCCAACGGCGCCTGCGTTCCCCCCGCCGCTCCCCAATCCGACGCTGCCGCCTATACC GCCTGCTTCTGCAGCCATGCCAAGGTGGCCCCCTTCTCACGAGGCACCGCCGGAGTCTGCGACGCCGCCTGTACC GCCAACCAGGCCGGCCTTCAGTCCATCGCAAGCTGGTTCCAGGGCATCTGCAAGCCTCCCGTCGCCGCCCCGCCC CCCGCCAACAACCCCAACGGCCTCCCCGGGAACGTGCGTGAGAGCAACCCTGATCAGGGTTCGTCAAACAGCCCT ACCGTCCCTGCCAACACCGGAGGTGGTGACTGGCTTTCCCATCACTGGCAATGGGTCATCATGCTCGTCGTTCTC GTCGTTGGCATCGCTGGCATCTGGATCGGCGCCTGCATTTGGCGCAGGCGCTACCTCCGCAACAAGGACCAGCTG ATGCTCAGCCAGAGACGGCCCCACGTCGCCGCCAGCCCGTCTTGGGGTCCTGCCATTGCCGGCTCCGAGTCCGCC ACACCCATGACTTTCGTGGCCGACTCGGAGAGGTCCTTGCCTGAGAAGCCCAAGAGCAAGGACAAGGCCAAATGG ACCGTTACCCAACGGACATGA |
| Gene | >Ophio5|31 ATGGGTACGCCATCCTCTTCTTTCAGGCCTCGGATCCATGCTAACTCGACTCCCAGCGGCCCAGGCTCCCATCAC CACCATCCCCCCCTTCACAGATGTCGCCAGACTCCCCGACTGCGCAAAGAGCTGCGGCCCGCTCTACGACGCCAA CGGCGCCTGCGTTCCCCCCGCCGCTCCCCAATCCGACGCTGCCGCCTATACCGCCTGCTTCTGCAGCCATGCCAA GGTGGCCCCCTTCTCACGAGGCACCGCCGGAGTCTGCGACGCCGCCTGTACCGCCAACCAGGCCGGCCTTCAGTC CATCGCAAGCTGGTTCCAGGGCATCTGCAAGCCTCCCGTCGCCGCCCCGCCCCCCGCCAACAACCCCAACGGCCT CCCCGGGAACGTGCGTGAGAGCAACCCTGATCAGGGTTCGTCAAACAGCCCTACCGTCCCTGCCAACACCGGAGG TGGTGACTGGTTCGTCGTCGTCAACCCGGAGCTCTTGTTATCCTTGCCCTAACACTTATGTCCAGGCTTTCCCAT CACTGGCAATGGGTCATCATGCTCGTCGTTCTCGTCGTTGGCATCGCTGGCATCTGGATCGGCGCCTGCATTTGG CGCAGGCGCTACCTCCGCAACAAGGACCAGCTGATGCTCAGCCAGAGACGGCCCCACGTCGCCGCCAGCCCGTCT TGGGGTCCTGCCATTGCCGGCTCCGAGTCCGCCACACCCATGACTTTCGTGGCCGACTCGGAGAGGTCCTTGCCT GAGAAGCCCAAGAGCAAGGACAAGGCCAAATGGACCGTTACCCAACGGACATGA |