© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3055 |
| Gene name | |
| Location | scaffold_242:10929..12312 |
| Strand | - |
| Gene length (bp) | 1383 |
| Transcript length (bp) | 1215 |
| Coding sequence length (bp) | 1212 |
| Protein length (aa) | 404 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03151 | TPT | Triose-phosphate Transporter family | 2.2E-23 | 42 | 329 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9LRP2|PT317_ARATH | Probable sugar phosphate/phosphate translocator At3g17430 OS=Arabidopsis thaliana GN=At3g17430 PE=1 SV=1 | 52 | 330 | 9.0E-57 |
| sp|Q9SKJ7|PT225_ARATH | Probable sugar phosphate/phosphate translocator At2g25520 OS=Arabidopsis thaliana GN=At2g25520 PE=1 SV=1 | 44 | 354 | 4.0E-56 |
| sp|Q9LFN3|PT511_ARATH | Probable sugar phosphate/phosphate translocator At5g11230 OS=Arabidopsis thaliana GN=At5g11230 PE=2 SV=1 | 44 | 330 | 2.0E-55 |
| sp|Q3E6T0|PT525_ARATH | Probable sugar phosphate/phosphate translocator At5g25400 OS=Arabidopsis thaliana GN=At5g25400 PE=2 SV=1 | 44 | 330 | 2.0E-55 |
| sp|Q9C8M1|PT153_ARATH | Probable sugar phosphate/phosphate translocator At1g53660 OS=Arabidopsis thaliana GN=At1g53660 PE=3 SV=2 | 45 | 330 | 2.0E-55 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9LRP2|PT317_ARATH | Probable sugar phosphate/phosphate translocator At3g17430 OS=Arabidopsis thaliana GN=At3g17430 PE=1 SV=1 | 52 | 330 | 9.0E-57 |
| sp|Q9SKJ7|PT225_ARATH | Probable sugar phosphate/phosphate translocator At2g25520 OS=Arabidopsis thaliana GN=At2g25520 PE=1 SV=1 | 44 | 354 | 4.0E-56 |
| sp|Q9LFN3|PT511_ARATH | Probable sugar phosphate/phosphate translocator At5g11230 OS=Arabidopsis thaliana GN=At5g11230 PE=2 SV=1 | 44 | 330 | 2.0E-55 |
| sp|Q3E6T0|PT525_ARATH | Probable sugar phosphate/phosphate translocator At5g25400 OS=Arabidopsis thaliana GN=At5g25400 PE=2 SV=1 | 44 | 330 | 2.0E-55 |
| sp|Q9C8M1|PT153_ARATH | Probable sugar phosphate/phosphate translocator At1g53660 OS=Arabidopsis thaliana GN=At1g53660 PE=3 SV=2 | 45 | 330 | 2.0E-55 |
| sp|Q9SUV2|PT432_ARATH | Probable sugar phosphate/phosphate translocator At4g32390 OS=Arabidopsis thaliana GN=At4g32390 PE=3 SV=1 | 44 | 330 | 3.0E-55 |
| sp|Q94EI9|PT314_ARATH | Probable sugar phosphate/phosphate translocator At3g14410 OS=Arabidopsis thaliana GN=At3g14410 PE=2 SV=1 | 28 | 330 | 1.0E-50 |
| sp|Q9LNH5|PT148_ARATH | Probable sugar phosphate/phosphate translocator At1g48230 OS=Arabidopsis thaliana GN=At1g48230 PE=2 SV=2 | 52 | 330 | 4.0E-50 |
| sp|Q9SFE9|GONS5_ARATH | GDP-mannose transporter GONST5 OS=Arabidopsis thaliana GN=GONST5 PE=2 SV=1 | 43 | 333 | 2.0E-25 |
| sp|Q8H184|PT106_ARATH | Probable sugar phosphate/phosphate translocator At1g06470 OS=Arabidopsis thaliana GN=At1g06470 PE=2 SV=1 | 14 | 346 | 2.0E-24 |
| sp|Q9C521|UGAL1_ARATH | UDP-galactose transporter 1 OS=Arabidopsis thaliana GN=UDP-GALT1 PE=2 SV=1 | 43 | 333 | 4.0E-24 |
| sp|Q6DBP3|PT505_ARATH | Probable sugar phosphate/phosphate translocator At5g05820 OS=Arabidopsis thaliana GN=At5g05820 PE=2 SV=1 | 45 | 338 | 5.0E-24 |
| sp|Q5XF09|PT311_ARATH | Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1 | 45 | 337 | 4.0E-22 |
| sp|Q9LDH3|PT112_ARATH | Probable sugar phosphate/phosphate translocator At1g12500 OS=Arabidopsis thaliana GN=At1g12500 PE=1 SV=1 | 8 | 337 | 1.0E-18 |
| sp|Q9FYE5|PT504_ARATH | Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1 | 31 | 329 | 1.0E-17 |
| sp|Q9SS40|PT310_ARATH | Probable sugar phosphate/phosphate translocator At3g10290 OS=Arabidopsis thaliana GN=At3g10290 PE=3 SV=1 | 34 | 329 | 1.0E-16 |
| sp|Q9NQQ7|S35C2_HUMAN | Solute carrier family 35 member C2 OS=Homo sapiens GN=SLC35C2 PE=1 SV=2 | 45 | 326 | 2.0E-15 |
| sp|Q8VCX2|S35C2_MOUSE | Solute carrier family 35 member C2 OS=Mus musculus GN=Slc35c2 PE=1 SV=1 | 36 | 326 | 5.0E-13 |
| sp|Q6ICL7|S35E4_HUMAN | Solute carrier family 35 member E4 OS=Homo sapiens GN=SLC35E4 PE=2 SV=1 | 20 | 330 | 3.0E-12 |
| sp|Q10354|YDB1_SCHPO | Uncharacterized transporter C22E12.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22E12.01 PE=3 SV=2 | 43 | 346 | 9.0E-10 |
| sp|P49132|TPT_FLATR | Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1 | 68 | 346 | 2.0E-09 |
| sp|Q5RKL7|S35E4_RAT | Solute carrier family 35 member E4 OS=Rattus norvegicus GN=Slc35e4 PE=2 SV=1 | 1 | 330 | 3.0E-09 |
| sp|Q550W6|FUCT1_DICDI | GDP-fucose transporter 1 OS=Dictyostelium discoideum GN=slc35c1 PE=3 SV=1 | 52 | 331 | 1.0E-08 |
| sp|P21727|TPT_PEA | Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1 | 38 | 346 | 1.0E-08 |
| sp|P49131|TPT_FLAPR | Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1 | 68 | 345 | 4.0E-08 |
| sp|Q84QU8|PPT2_ORYSJ | Phosphoenolpyruvate/phosphate translocator 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT2 PE=2 SV=1 | 48 | 337 | 6.0E-08 |
| sp|P11869|TPT_SPIOL | Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1 | 68 | 346 | 7.0E-08 |
| sp|Q69VR7|PPT1_ORYSJ | Phosphoenolpyruvate/phosphate translocator 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT1 PE=2 SV=1 | 48 | 337 | 2.0E-07 |
| sp|P49133|TPT_MAIZE | Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1 | 68 | 346 | 2.0E-07 |
| sp|Q5VQL3|PPT3_ORYSJ | Phosphoenolpyruvate/phosphate translocator 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT3 PE=2 SV=1 | 57 | 330 | 4.0E-07 |
| sp|Q9FTT3|TPT_ORYSJ | Triose phosphate/phosphate translocator TPT, chloroplastic OS=Oryza sativa subsp. japonica GN=TPT PE=2 SV=1 | 68 | 345 | 2.0E-06 |
| sp|Q8RXN3|PPT1_ARATH | Phosphoenolpyruvate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=PPT1 PE=1 SV=1 | 48 | 329 | 1.0E-05 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 41 | 63 | 22 |
| 2 | 73 | 95 | 22 |
| 3 | 108 | 127 | 19 |
| 4 | 137 | 159 | 22 |
| 5 | 166 | 188 | 22 |
| 6 | 192 | 209 | 17 |
| 7 | 222 | 244 | 22 |
| 8 | 259 | 281 | 22 |
| 9 | 286 | 308 | 22 |
| 10 | 312 | 329 | 17 |
| 11 | 360 | 382 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3055 MPSEEKSRISGDVSRSDALPTLPTVSPMAEKSQPSKAALHPALYVLTWIGFSSSVILFNKWLLDTLNFRYPVILT TYHLTFATIVTQVMARWTTLLDGRKSVKMTGRVYLRAVVPIGIFFSLSLICGNLTYLYLSVAFIQMLKATTPVAV LISGWTLGVTQPNLKQFLNVSAIVVGVIIASIGEIHFVPVGVLYQIGGIVFEALRLTMVQRLLSSADFKMDPLVS LYYFAPICAVMNGVVALIWEFPKVSMTDVYNVGLFTFFLNGLCAFMLNVSVVFLIGKTSAVVLTLCGVLKDIMLV AASMFIWGTEVTALQFFGYSIALGGMVYYKLGYEQLKGYIGEGNRQWAEFGARKPVLRKIAIITMSAFVLFTFFG TLAPTYAPSYDPTKLTNEVTSHFGKAHAQ |
| Coding | >Ophio5|3055 ATGCCGTCAGAGGAAAAGAGTCGCATTTCTGGCGACGTCTCCCGCTCCGACGCCTTGCCGACTTTGCCCACCGTC AGCCCAATGGCGGAGAAATCGCAGCCGTCCAAGGCGGCCCTGCACCCGGCCCTATACGTCCTCACCTGGATCGGC TTCAGCTCCTCCGTCATCCTCTTCAACAAATGGCTCCTCGACACGCTCAACTTTCGCTATCCCGTCATCCTCACA ACCTACCACTTGACCTTTGCCACCATCGTCACTCAGGTCATGGCGCGCTGGACCACGCTGCTTGACGGCCGGAAA TCCGTCAAGATGACGGGTCGCGTCTATTTGCGCGCCGTCGTTCCCATCGGCATCTTCTTCAGTCTGAGCCTGATT TGCGGCAACCTGACGTACCTCTACCTCTCCGTTGCCTTTATCCAGATGCTCAAGGCCACCACTCCCGTCGCTGTC CTTATCTCTGGCTGGACCCTGGGCGTTACGCAGCCCAATTTGAAGCAGTTCCTGAACGTCTCGGCCATCGTCGTC GGCGTCATCATCGCCTCCATCGGAGAAATTCACTTCGTCCCCGTTGGCGTTCTCTACCAGATTGGAGGCATCGTC TTTGAAGCCTTGCGTCTCACCATGGTCCAGCGGCTGTTGAGTTCGGCTGACTTCAAGATGGACCCCCTCGTCTCC CTCTACTACTTCGCCCCCATCTGCGCCGTCATGAACGGAGTCGTTGCCCTCATCTGGGAGTTCCCAAAGGTCTCC ATGACGGATGTTTACAACGTCGGCCTGTTCACTTTCTTCCTCAATGGACTCTGCGCCTTTATGCTCAACGTCTCC GTCGTCTTCTTGATCGGCAAGACCTCTGCCGTCGTTCTCACCCTTTGTGGCGTCCTCAAAGATATCATGCTTGTC GCCGCCTCCATGTTTATCTGGGGTACAGAGGTCACGGCCTTGCAGTTTTTCGGTTACTCCATCGCCCTCGGCGGC ATGGTCTACTACAAGCTCGGTTATGAGCAGCTCAAGGGATACATCGGCGAGGGCAACCGCCAATGGGCCGAGTTT GGCGCCCGCAAGCCTGTACTTCGCAAGATCGCCATCATCACCATGTCGGCCTTTGTGCTCTTCACCTTCTTCGGC ACCTTGGCGCCCACTTACGCCCCCAGTTATGACCCTACCAAGCTCACCAACGAGGTGACCAGTCACTTCGGCAAG GCCCACGCCCAA |
| Transcript | >Ophio5|3055 ATGCCGTCAGAGGAAAAGAGTCGCATTTCTGGCGACGTCTCCCGCTCCGACGCCTTGCCGACTTTGCCCACCGTC AGCCCAATGGCGGAGAAATCGCAGCCGTCCAAGGCGGCCCTGCACCCGGCCCTATACGTCCTCACCTGGATCGGC TTCAGCTCCTCCGTCATCCTCTTCAACAAATGGCTCCTCGACACGCTCAACTTTCGCTATCCCGTCATCCTCACA ACCTACCACTTGACCTTTGCCACCATCGTCACTCAGGTCATGGCGCGCTGGACCACGCTGCTTGACGGCCGGAAA TCCGTCAAGATGACGGGTCGCGTCTATTTGCGCGCCGTCGTTCCCATCGGCATCTTCTTCAGTCTGAGCCTGATT TGCGGCAACCTGACGTACCTCTACCTCTCCGTTGCCTTTATCCAGATGCTCAAGGCCACCACTCCCGTCGCTGTC CTTATCTCTGGCTGGACCCTGGGCGTTACGCAGCCCAATTTGAAGCAGTTCCTGAACGTCTCGGCCATCGTCGTC GGCGTCATCATCGCCTCCATCGGAGAAATTCACTTCGTCCCCGTTGGCGTTCTCTACCAGATTGGAGGCATCGTC TTTGAAGCCTTGCGTCTCACCATGGTCCAGCGGCTGTTGAGTTCGGCTGACTTCAAGATGGACCCCCTCGTCTCC CTCTACTACTTCGCCCCCATCTGCGCCGTCATGAACGGAGTCGTTGCCCTCATCTGGGAGTTCCCAAAGGTCTCC ATGACGGATGTTTACAACGTCGGCCTGTTCACTTTCTTCCTCAATGGACTCTGCGCCTTTATGCTCAACGTCTCC GTCGTCTTCTTGATCGGCAAGACCTCTGCCGTCGTTCTCACCCTTTGTGGCGTCCTCAAAGATATCATGCTTGTC GCCGCCTCCATGTTTATCTGGGGTACAGAGGTCACGGCCTTGCAGTTTTTCGGTTACTCCATCGCCCTCGGCGGC ATGGTCTACTACAAGCTCGGTTATGAGCAGCTCAAGGGATACATCGGCGAGGGCAACCGCCAATGGGCCGAGTTT GGCGCCCGCAAGCCTGTACTTCGCAAGATCGCCATCATCACCATGTCGGCCTTTGTGCTCTTCACCTTCTTCGGC ACCTTGGCGCCCACTTACGCCCCCAGTTATGACCCTACCAAGCTCACCAACGAGGTGACCAGTCACTTCGGCAAG GCCCACGCCCAATAA |
| Gene | >Ophio5|3055 ATGCCGTCAGAGGAAAAGAGTCGCATTTCTGGCGACGTCTCCCGCTCCGACGCCTTGCCGACTTTGCCCACCGTC AGCCCAATGGCGGAGAAATCGCAGCCGTCCAAGGCGGCCCTGCACCCGGCCCTATACGTCCTGTGAGTGTTTCCC AGATATCGTCGTCGCACGGGTTCGACTGACGCGGCCTGCATAGCACCTGGATCGGCTTCAGCTCCTCCGTCATCC TCTTCAACAAATGGCTCCTCGACACGCTCAACTTTCGTACGTGCTAAAGGGCCGAACGACGCGTCCGCTCGCCAG CTAACACTGCGCCTCAGGCTATCCCGTCATCCTCACAACCTACCACTTGACCTTTGCCACCATCGTCACTCAGGT CATGGCGCGCTGGACCACGCTGCTTGACGGCCGGAAATCCGTCAAGATGACGGGTCGCGTCTATTTGCGCGCCGT CGTTCCCATCGGCATCTTCTTCAGTCTGAGCCTGATTTGCGGCAACCTGACGTACCTCTACCTCTCCGTTGCCTT TATCCAGATGCTCAAGGCCACCACTCCCGTCGCTGTCCTTATCTCTGGCTGGACCCTGGGCGTTACGCAGCCCAA TTTGAAGCAGTTCCTGAACGTCTCGGCCATCGTCGTCGGCGTCATCATCGCCTCCATCGGAGAAATTCACTTCGT CCCCGTTGGCGTTCTCTACCAGATTGGAGGCATCGTCTTTGAAGCCTTGCGTCTCACCATGGTCCAGCGGCTGTT GAGTTCGGCTGACTTCAAGATGGACCCCCTCGTCTCCCTCTACTACTTCGCCCCCATCTGCGCCGTCATGAACGG AGTCGTTGCCCTCATCTGGGAGTTCCCAAAGGTCTCCATGACGGATGTTTACAACGTCGGCCTGTTCACTTTCTT CCTCAATGGACTCTGCGCCTTTATGCTCAACGTCTCCGTCGTCTTCTTGGTGCGATGAGCCACGTTCCCGCAACC GCCTGCTGCGTGCTGACCCCTTCTGCACAGATCGGCAAGACCTCTGCCGTCGTTCTCACCCTTTGTGGCGTCCTC AAAGATATCATGCTTGTCGCCGCCTCCATGTTTATCTGGGGTACAGAGGTCACGGCCTTGCAGTTTTTCGGTTAC TCCATCGCCCTCGGCGGCATGGTCTACTACAAGCTCGGTTATGAGCAGCTCAAGGGATACATCGGCGAGGGCAAC CGCCAATGGGCCGAGTTTGGCGCCCGCAAGCCTGTACTTCGCAAGATCGCCATCATCACCATGTCGGCCTTTGTG CTCTTCACCTTCTTCGGCACCTTGGCGCCCACTTACGCCCCCAGTTATGACCCTACCAAGCTCACCAACGAGGTG ACCAGTCACTTCGGCAAGGCCCACGCCCAATAA |