Protein ID | Ophio5|305 |
Gene name | |
Location | scaffold_107:2664..4135 |
Strand | + |
Gene length (bp) | 1471 |
Transcript length (bp) | 1365 |
Coding sequence length (bp) | 1362 |
Protein length (aa) | 454 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01008 | IF-2B | Initiation factor 2 subunit family | 3.4E-45 | 39 | 427 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9UT76|EI2BB_SCHPO | Probable translation initiation factor eIF-2B subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif222 PE=1 SV=1 | 27 | 445 | 3.0E-56 |
sp|Q90511|EI2BB_TAKRU | Translation initiation factor eIF-2B subunit beta OS=Takifugu rubripes GN=eif2b2 PE=3 SV=1 | 219 | 445 | 2.0E-37 |
sp|Q62818|EI2BB_RAT | Translation initiation factor eIF-2B subunit beta OS=Rattus norvegicus GN=Eif2b2 PE=2 SV=1 | 219 | 445 | 1.0E-35 |
sp|P49770|EI2BB_HUMAN | Translation initiation factor eIF-2B subunit beta OS=Homo sapiens GN=EIF2B2 PE=1 SV=3 | 219 | 445 | 2.0E-35 |
sp|Q5E9B4|EI2BB_BOVIN | Translation initiation factor eIF-2B subunit beta OS=Bos taurus GN=EIF2B2 PE=2 SV=1 | 219 | 445 | 3.0E-35 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9UT76|EI2BB_SCHPO | Probable translation initiation factor eIF-2B subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif222 PE=1 SV=1 | 27 | 445 | 3.0E-56 |
sp|Q90511|EI2BB_TAKRU | Translation initiation factor eIF-2B subunit beta OS=Takifugu rubripes GN=eif2b2 PE=3 SV=1 | 219 | 445 | 2.0E-37 |
sp|Q62818|EI2BB_RAT | Translation initiation factor eIF-2B subunit beta OS=Rattus norvegicus GN=Eif2b2 PE=2 SV=1 | 219 | 445 | 1.0E-35 |
sp|P49770|EI2BB_HUMAN | Translation initiation factor eIF-2B subunit beta OS=Homo sapiens GN=EIF2B2 PE=1 SV=3 | 219 | 445 | 2.0E-35 |
sp|Q5E9B4|EI2BB_BOVIN | Translation initiation factor eIF-2B subunit beta OS=Bos taurus GN=EIF2B2 PE=2 SV=1 | 219 | 445 | 3.0E-35 |
sp|Q28690|EI2BB_RABIT | Translation initiation factor eIF-2B subunit beta OS=Oryctolagus cuniculus GN=EIF2B2 PE=1 SV=1 | 219 | 445 | 5.0E-35 |
sp|Q54EY2|EI2BB_DICDI | Translation initiation factor eIF-2B subunit beta OS=Dictyostelium discoideum GN=eif2b2 PE=3 SV=1 | 219 | 445 | 1.0E-34 |
sp|Q99LD9|EI2BB_MOUSE | Translation initiation factor eIF-2B subunit beta OS=Mus musculus GN=Eif2b2 PE=1 SV=1 | 219 | 445 | 2.0E-34 |
sp|P32502|EI2BB_YEAST | Translation initiation factor eIF-2B subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD7 PE=1 SV=1 | 209 | 446 | 3.0E-26 |
sp|P32502|EI2BB_YEAST | Translation initiation factor eIF-2B subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD7 PE=1 SV=1 | 21 | 108 | 3.0E-13 |
sp|Q54EY2|EI2BB_DICDI | Translation initiation factor eIF-2B subunit beta OS=Dictyostelium discoideum GN=eif2b2 PE=3 SV=1 | 22 | 104 | 6.0E-13 |
sp|Q9V281|R15PI_PYRAB | Ribose 1,5-bisphosphate isomerase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB01930 PE=3 SV=1 | 169 | 426 | 2.0E-12 |
sp|Q8U4G6|R15PI_PYRFU | Ribose 1,5-bisphosphate isomerase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0122 PE=3 SV=2 | 180 | 427 | 2.0E-12 |
sp|O57947|R15PI_PYRHO | Ribose 1,5-bisphosphate isomerase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0208 PE=3 SV=1 | 169 | 426 | 3.0E-11 |
sp|Q90511|EI2BB_TAKRU | Translation initiation factor eIF-2B subunit beta OS=Takifugu rubripes GN=eif2b2 PE=3 SV=1 | 20 | 109 | 4.0E-11 |
sp|Q5JFM9|R15PI_THEKO | Ribose 1,5-bisphosphate isomerase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0185 PE=1 SV=1 | 180 | 426 | 7.0E-11 |
sp|Q54FM3|EI2BD_DICDI | Translation initiation factor eIF-2B subunit delta OS=Dictyostelium discoideum GN=eif2b4 PE=3 SV=1 | 220 | 426 | 1.0E-10 |
sp|Q63186|EI2BD_RAT | Translation initiation factor eIF-2B subunit delta OS=Rattus norvegicus GN=Eif2b4 PE=2 SV=1 | 209 | 426 | 1.0E-10 |
sp|Q61749|EI2BD_MOUSE | Translation initiation factor eIF-2B subunit delta OS=Mus musculus GN=Eif2b4 PE=1 SV=2 | 209 | 426 | 3.0E-10 |
sp|O28242|R15PI_ARCFU | Ribose 1,5-bisphosphate isomerase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2037 PE=3 SV=1 | 220 | 426 | 5.0E-10 |
sp|Q3T058|EI2BD_BOVIN | Translation initiation factor eIF-2B subunit delta OS=Bos taurus GN=EIF2B4 PE=2 SV=1 | 209 | 426 | 2.0E-09 |
sp|P49770|EI2BB_HUMAN | Translation initiation factor eIF-2B subunit beta OS=Homo sapiens GN=EIF2B2 PE=1 SV=3 | 20 | 104 | 3.0E-09 |
sp|Q54I81|EI2BA_DICDI | Translation initiation factor eIF-2B subunit alpha OS=Dictyostelium discoideum GN=eif2b1 PE=3 SV=1 | 217 | 426 | 3.0E-09 |
sp|P41111|EI2BD_RABIT | Translation initiation factor eIF-2B subunit delta OS=Oryctolagus cuniculus GN=EIF2B4 PE=2 SV=2 | 245 | 426 | 3.0E-09 |
sp|Q57586|R15PI_METJA | Ribose 1,5-bisphosphate isomerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0122 PE=3 SV=1 | 215 | 426 | 5.0E-09 |
sp|Q9UI10|EI2BD_HUMAN | Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2 | 204 | 426 | 1.0E-08 |
sp|Q28690|EI2BB_RABIT | Translation initiation factor eIF-2B subunit beta OS=Oryctolagus cuniculus GN=EIF2B2 PE=1 SV=1 | 20 | 104 | 2.0E-08 |
sp|Q5E9B4|EI2BB_BOVIN | Translation initiation factor eIF-2B subunit beta OS=Bos taurus GN=EIF2B2 PE=2 SV=1 | 1 | 104 | 3.0E-08 |
sp|Q64270|EI2BA_RAT | Translation initiation factor eIF-2B subunit alpha OS=Rattus norvegicus GN=Eif2b1 PE=2 SV=1 | 228 | 382 | 3.0E-08 |
sp|Q99LC8|EI2BA_MOUSE | Translation initiation factor eIF-2B subunit alpha OS=Mus musculus GN=Eif2b1 PE=1 SV=1 | 228 | 382 | 7.0E-08 |
sp|Q0IIF2|EI2BA_BOVIN | Translation initiation factor eIF-2B subunit alpha OS=Bos taurus GN=EIF2B1 PE=2 SV=1 | 228 | 382 | 8.0E-08 |
sp|Q99LD9|EI2BB_MOUSE | Translation initiation factor eIF-2B subunit beta OS=Mus musculus GN=Eif2b2 PE=1 SV=1 | 1 | 104 | 1.0E-07 |
sp|Q4R4V8|EI2BA_MACFA | Translation initiation factor eIF-2B subunit alpha OS=Macaca fascicularis GN=EIF2B1 PE=2 SV=1 | 228 | 382 | 3.0E-07 |
sp|D4GV73|R15PI_HALVD | Ribose 1,5-bisphosphate isomerase OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) GN=HVO_0966 PE=1 SV=1 | 219 | 443 | 5.0E-07 |
sp|Q62818|EI2BB_RAT | Translation initiation factor eIF-2B subunit beta OS=Rattus norvegicus GN=Eif2b2 PE=2 SV=1 | 20 | 104 | 1.0E-06 |
sp|Q5RAR0|EI2BA_PONAB | Translation initiation factor eIF-2B subunit alpha OS=Pongo abelii GN=EIF2B1 PE=2 SV=2 | 228 | 382 | 1.0E-06 |
sp|Q14232|EI2BA_HUMAN | Translation initiation factor eIF-2B subunit alpha OS=Homo sapiens GN=EIF2B1 PE=1 SV=1 | 228 | 382 | 1.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0044237 | cellular metabolic process | Yes |
GO:0008152 | metabolic process | No |
GO:0009987 | cellular process | No |
GO:0008150 | biological_process | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm|Nucleus | Nuclear export signal | 0.7446 | 0.5474 | 0.051 | 0.0479 | 0.0442 | 0.0337 | 0.1331 | 0.1291 | 0.118 | 0.0034 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 70.26 | 38.43 | 102.08 |
CcL | In ants, during behavior modification | 122.99 | 64.02 | 181.96 |
CcD | In ants, recently dead | 126.76 | 67.81 | 185.71 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.012243 | yes |
SC16a | CcD | 0.007782 | yes |
CcL | CcD | 0.919176 | no |
Orthofinder run ID | 4 |
Orthogroup | 1338 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|305 MPSAAAGHAPDLENYLKSLKSQSLEAAIERLISLLKRRQIRGSEACAVATAHILLQVVARAKWQDADGLLEKVCA TGRRLVEAQPTELVVANIVRRVLALIRDEAAEDRNEPSSEAPSEAPFTPTDGSTPARSWSPPQTVARQDSAGDLA SPSATSHVPSRAGLFPSYSSANLPKTLFHLLSASPPSDVVTSMPSSFRNSGTSTPTGRGGQANSQENTLRSEVID GIEEILDEISQVDDQIAAQAEAQIHPGDHVLIHRLSPSVERFILRAALKRRFTVLMTAEAPRVRKHQDSQAMAAF QKRLSTAGIPAIVLRSAALTAYMPRIDKVVLSARAILANGGVVAESGAATVARAAKEAGSAVVALAGVYKLSPEH PSDEESVIEWASPSTYVGFDDGPLVEGIEVRTAATELVPPGLVDMYMTNLGTHSRDHLASLIADHYNQEDAGFHL PSDG |
Coding | >Ophio5|305 ATGCCATCGGCCGCTGCGGGCCACGCGCCCGATCTCGAAAATTACCTCAAGTCGCTCAAGAGCCAATCGCTGGAA GCAGCCATCGAGAGACTCATATCCCTCCTGAAGCGTCGACAGATCCGCGGTTCCGAAGCCTGCGCCGTCGCTACC GCCCATATCCTTTTACAGGTCGTCGCCAGAGCCAAGTGGCAGGATGCCGACGGCTTGCTCGAAAAAGTCTGCGCC ACGGGCCGTCGTCTGGTCGAGGCACAGCCGACGGAACTGGTTGTTGCCAACATCGTTCGTCGCGTCCTCGCTTTG ATTCGCGATGAGGCAGCAGAGGATCGAAATGAGCCGTCGAGCGAGGCTCCCAGCGAGGCGCCCTTTACGCCAACA GATGGCTCGACTCCGGCCCGGAGCTGGTCGCCGCCTCAGACGGTCGCCAGGCAGGACTCGGCTGGTGACTTGGCC TCGCCTTCCGCGACTTCACATGTGCCGTCTCGCGCTGGTCTTTTCCCGTCGTATAGCTCGGCCAACCTGCCCAAG ACGTTGTTCCACCTGCTGTCCGCGTCGCCTCCGTCCGACGTCGTCACCTCTATGCCCTCCTCGTTTCGAAACTCG GGCACCTCCACACCCACCGGCAGAGGCGGTCAGGCCAACAGCCAGGAGAACACGCTTCGGTCCGAGGTCATCGAC GGCATCGAGGAGATACTCGACGAAATCAGCCAGGTCGATGACCAGATCGCCGCCCAGGCCGAGGCGCAGATCCAC CCGGGAGACCACGTCCTCATCCACCGTCTCTCGCCCTCCGTCGAGCGCTTCATTCTCCGCGCCGCTCTCAAGCGC CGCTTCACCGTCCTCATGACGGCCGAGGCGCCTCGCGTCCGGAAACACCAGGACTCCCAGGCCATGGCCGCCTTT CAAAAGAGGCTCTCCACAGCCGGCATCCCGGCCATCGTCCTTCGGAGCGCAGCCCTGACAGCCTACATGCCACGC ATCGACAAAGTCGTTCTCAGCGCACGCGCCATCTTAGCCAATGGCGGCGTCGTCGCCGAGTCCGGCGCGGCGACG GTAGCACGCGCTGCCAAGGAAGCCGGCAGCGCCGTCGTCGCCCTCGCCGGCGTCTACAAACTCAGCCCGGAGCAT CCGTCGGACGAGGAGTCGGTCATCGAATGGGCCAGTCCGTCGACGTATGTCGGCTTCGACGACGGGCCCCTGGTC GAGGGGATCGAGGTCCGGACCGCGGCGACGGAGCTGGTGCCGCCCGGGCTCGTTGACATGTACATGACGAACCTG GGGACGCACTCGCGTGATCACTTGGCCAGTCTCATCGCGGACCACTACAATCAGGAGGATGCTGGCTTCCATCTG CCCAGCGACGGA |
Transcript | >Ophio5|305 ATGCCATCGGCCGCTGCGGGCCACGCGCCCGATCTCGAAAATTACCTCAAGTCGCTCAAGAGCCAATCGCTGGAA GCAGCCATCGAGAGACTCATATCCCTCCTGAAGCGTCGACAGATCCGCGGTTCCGAAGCCTGCGCCGTCGCTACC GCCCATATCCTTTTACAGGTCGTCGCCAGAGCCAAGTGGCAGGATGCCGACGGCTTGCTCGAAAAAGTCTGCGCC ACGGGCCGTCGTCTGGTCGAGGCACAGCCGACGGAACTGGTTGTTGCCAACATCGTTCGTCGCGTCCTCGCTTTG ATTCGCGATGAGGCAGCAGAGGATCGAAATGAGCCGTCGAGCGAGGCTCCCAGCGAGGCGCCCTTTACGCCAACA GATGGCTCGACTCCGGCCCGGAGCTGGTCGCCGCCTCAGACGGTCGCCAGGCAGGACTCGGCTGGTGACTTGGCC TCGCCTTCCGCGACTTCACATGTGCCGTCTCGCGCTGGTCTTTTCCCGTCGTATAGCTCGGCCAACCTGCCCAAG ACGTTGTTCCACCTGCTGTCCGCGTCGCCTCCGTCCGACGTCGTCACCTCTATGCCCTCCTCGTTTCGAAACTCG GGCACCTCCACACCCACCGGCAGAGGCGGTCAGGCCAACAGCCAGGAGAACACGCTTCGGTCCGAGGTCATCGAC GGCATCGAGGAGATACTCGACGAAATCAGCCAGGTCGATGACCAGATCGCCGCCCAGGCCGAGGCGCAGATCCAC CCGGGAGACCACGTCCTCATCCACCGTCTCTCGCCCTCCGTCGAGCGCTTCATTCTCCGCGCCGCTCTCAAGCGC CGCTTCACCGTCCTCATGACGGCCGAGGCGCCTCGCGTCCGGAAACACCAGGACTCCCAGGCCATGGCCGCCTTT CAAAAGAGGCTCTCCACAGCCGGCATCCCGGCCATCGTCCTTCGGAGCGCAGCCCTGACAGCCTACATGCCACGC ATCGACAAAGTCGTTCTCAGCGCACGCGCCATCTTAGCCAATGGCGGCGTCGTCGCCGAGTCCGGCGCGGCGACG GTAGCACGCGCTGCCAAGGAAGCCGGCAGCGCCGTCGTCGCCCTCGCCGGCGTCTACAAACTCAGCCCGGAGCAT CCGTCGGACGAGGAGTCGGTCATCGAATGGGCCAGTCCGTCGACGTATGTCGGCTTCGACGACGGGCCCCTGGTC GAGGGGATCGAGGTCCGGACCGCGGCGACGGAGCTGGTGCCGCCCGGGCTCGTTGACATGTACATGACGAACCTG GGGACGCACTCGCGTGATCACTTGGCCAGTCTCATCGCGGACCACTACAATCAGGAGGATGCTGGCTTCCATCTG CCCAGCGACGGATAA |
Gene | >Ophio5|305 ATGCCATCGGCCGCTGCGGGCCACGCGCCCGATCTCGAAAATTACCTCAAGTCGCTCAAGAGCCAATCGCTGGAA GCAGCCATCGAGAGACTCATATCGTACGTCCGAGAGGCTCACACGACTCTTTTCCTCTTTTGACCACAGCGTTGC AGCCTCCTGAAGCGTCGACAGATCCGCGGTTCCGAAGCCTGCGCCGTCGCTACCGCCCATATCCTTTTACAGGTC GTCGCCAGAGCCAAGTGGCAGGATGCCGACGGCTTGCTCGAAAAAGTCTGCGCCACGGGCCGTCGTCTGGTCGAG GCACAGCCGACGGAACTGGTTGTTGCCAACATCGTTCGTCGCGTCCTCGCTTTGATTCGCGATGAGGCAGCAGAG GATCGAAATGAGCCGTCGAGCGAGGCTCCCAGCGAGGCGCCCTTTACGCCAACAGATGGCTCGACTCCGGCCCGG AGCTGGTCGCCGCCTCAGACGGTCGCCAGGCAGGACTCGGCTGGTGACTTGGCCTCGCCTTCCGCGACTTCACAT GTGCCGTCTCGCGCTGGTCTTTTCCCGTCGTATAGCTCGGCCAACCTGCCCAAGACGTTGTTCCACCTGCTGTCC GCGTCGCCTCCGTCCGACGTCGTCACCTCTATGCCCTCCTCGTTTCGAAACTCGGGCACCTCCACACCCACCGGC AGAGGCGGTCAGGCCAACAGCCAGGAGAACACGCTTCGGTCCGAGGTCATCGACGGCATCGAGGAGATACTCGAC GAAATCAGCCAGGTCGATGACCAGATCGCCGCCCAGGCCGAGGCGCAGATCCACCCGGGAGACCACGTCCTCATC CACCGTCTCTCGCCCTCCGTCGAGCGCTTCATTCTCCGCGCCGCTCTCAAGCGCCGCTTCACCGTCCTCATGACG GCCGAGGCGCCTCGCGTCCGGAAACACCAGGACTCCCAGGCCATGGCCGCCTTTCAAAAGAGGCTCTCCACAGCC GGCATCCCGGCCATCGTCCTTCGGAGCGCAGCCCTGACAGCCTACATGCCACGCATCGACAAAGTCGTTCTCAGC GCACGCGCCATCTTAGCCAATGGCGGCGTCGTCGCCGAGTCCGGCGCGGCGACGGTAGCACGCGCTGCCAAGGAA GCCGGCAGCGCCGTCGTCGCCCTCGCCGGCGTCTACAAACTCAGCCCGGAGCATCCGTCGGACGAGGAGTCGGTC ATCGAATGGGCCAGTCCGTCGACGTATGTCGGCTTCGACGACGGGCCCCTGGTCGAGGGGATCGAGGTCCGGACC GCGGCGACGGAGCTGGTGCCGCCCGGGCTCGTTGACATGTACATGACGAACCTGTAAGTGTCGAATGCTTAGCCA TCTGCACTTCCCGGCTGACTTGATTTTCAGGGGGACGCACTCGCGTGATCACTTGGCCAGTCTCATCGCGGACCA CTACAATCAGGAGGATGCTGGCTTCCATCTGCCCAGCGACGGATAA |