Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|305
Gene name
Locationscaffold_107:2664..4135
Strand+
Gene length (bp)1471
Transcript length (bp)1365
Coding sequence length (bp)1362
Protein length (aa) 454

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01008 IF-2B Initiation factor 2 subunit family 3.4E-45 39 427

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9UT76|EI2BB_SCHPO Probable translation initiation factor eIF-2B subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif222 PE=1 SV=1 27 445 3.0E-56
sp|Q90511|EI2BB_TAKRU Translation initiation factor eIF-2B subunit beta OS=Takifugu rubripes GN=eif2b2 PE=3 SV=1 219 445 2.0E-37
sp|Q62818|EI2BB_RAT Translation initiation factor eIF-2B subunit beta OS=Rattus norvegicus GN=Eif2b2 PE=2 SV=1 219 445 1.0E-35
sp|P49770|EI2BB_HUMAN Translation initiation factor eIF-2B subunit beta OS=Homo sapiens GN=EIF2B2 PE=1 SV=3 219 445 2.0E-35
sp|Q5E9B4|EI2BB_BOVIN Translation initiation factor eIF-2B subunit beta OS=Bos taurus GN=EIF2B2 PE=2 SV=1 219 445 3.0E-35
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|Q9UT76|EI2BB_SCHPO Probable translation initiation factor eIF-2B subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif222 PE=1 SV=1 27 445 3.0E-56
sp|Q90511|EI2BB_TAKRU Translation initiation factor eIF-2B subunit beta OS=Takifugu rubripes GN=eif2b2 PE=3 SV=1 219 445 2.0E-37
sp|Q62818|EI2BB_RAT Translation initiation factor eIF-2B subunit beta OS=Rattus norvegicus GN=Eif2b2 PE=2 SV=1 219 445 1.0E-35
sp|P49770|EI2BB_HUMAN Translation initiation factor eIF-2B subunit beta OS=Homo sapiens GN=EIF2B2 PE=1 SV=3 219 445 2.0E-35
sp|Q5E9B4|EI2BB_BOVIN Translation initiation factor eIF-2B subunit beta OS=Bos taurus GN=EIF2B2 PE=2 SV=1 219 445 3.0E-35
sp|Q28690|EI2BB_RABIT Translation initiation factor eIF-2B subunit beta OS=Oryctolagus cuniculus GN=EIF2B2 PE=1 SV=1 219 445 5.0E-35
sp|Q54EY2|EI2BB_DICDI Translation initiation factor eIF-2B subunit beta OS=Dictyostelium discoideum GN=eif2b2 PE=3 SV=1 219 445 1.0E-34
sp|Q99LD9|EI2BB_MOUSE Translation initiation factor eIF-2B subunit beta OS=Mus musculus GN=Eif2b2 PE=1 SV=1 219 445 2.0E-34
sp|P32502|EI2BB_YEAST Translation initiation factor eIF-2B subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD7 PE=1 SV=1 209 446 3.0E-26
sp|P32502|EI2BB_YEAST Translation initiation factor eIF-2B subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD7 PE=1 SV=1 21 108 3.0E-13
sp|Q54EY2|EI2BB_DICDI Translation initiation factor eIF-2B subunit beta OS=Dictyostelium discoideum GN=eif2b2 PE=3 SV=1 22 104 6.0E-13
sp|Q9V281|R15PI_PYRAB Ribose 1,5-bisphosphate isomerase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB01930 PE=3 SV=1 169 426 2.0E-12
sp|Q8U4G6|R15PI_PYRFU Ribose 1,5-bisphosphate isomerase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0122 PE=3 SV=2 180 427 2.0E-12
sp|O57947|R15PI_PYRHO Ribose 1,5-bisphosphate isomerase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0208 PE=3 SV=1 169 426 3.0E-11
sp|Q90511|EI2BB_TAKRU Translation initiation factor eIF-2B subunit beta OS=Takifugu rubripes GN=eif2b2 PE=3 SV=1 20 109 4.0E-11
sp|Q5JFM9|R15PI_THEKO Ribose 1,5-bisphosphate isomerase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0185 PE=1 SV=1 180 426 7.0E-11
sp|Q54FM3|EI2BD_DICDI Translation initiation factor eIF-2B subunit delta OS=Dictyostelium discoideum GN=eif2b4 PE=3 SV=1 220 426 1.0E-10
sp|Q63186|EI2BD_RAT Translation initiation factor eIF-2B subunit delta OS=Rattus norvegicus GN=Eif2b4 PE=2 SV=1 209 426 1.0E-10
sp|Q61749|EI2BD_MOUSE Translation initiation factor eIF-2B subunit delta OS=Mus musculus GN=Eif2b4 PE=1 SV=2 209 426 3.0E-10
sp|O28242|R15PI_ARCFU Ribose 1,5-bisphosphate isomerase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2037 PE=3 SV=1 220 426 5.0E-10
sp|Q3T058|EI2BD_BOVIN Translation initiation factor eIF-2B subunit delta OS=Bos taurus GN=EIF2B4 PE=2 SV=1 209 426 2.0E-09
sp|P49770|EI2BB_HUMAN Translation initiation factor eIF-2B subunit beta OS=Homo sapiens GN=EIF2B2 PE=1 SV=3 20 104 3.0E-09
sp|Q54I81|EI2BA_DICDI Translation initiation factor eIF-2B subunit alpha OS=Dictyostelium discoideum GN=eif2b1 PE=3 SV=1 217 426 3.0E-09
sp|P41111|EI2BD_RABIT Translation initiation factor eIF-2B subunit delta OS=Oryctolagus cuniculus GN=EIF2B4 PE=2 SV=2 245 426 3.0E-09
sp|Q57586|R15PI_METJA Ribose 1,5-bisphosphate isomerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0122 PE=3 SV=1 215 426 5.0E-09
sp|Q9UI10|EI2BD_HUMAN Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2 204 426 1.0E-08
sp|Q28690|EI2BB_RABIT Translation initiation factor eIF-2B subunit beta OS=Oryctolagus cuniculus GN=EIF2B2 PE=1 SV=1 20 104 2.0E-08
sp|Q5E9B4|EI2BB_BOVIN Translation initiation factor eIF-2B subunit beta OS=Bos taurus GN=EIF2B2 PE=2 SV=1 1 104 3.0E-08
sp|Q64270|EI2BA_RAT Translation initiation factor eIF-2B subunit alpha OS=Rattus norvegicus GN=Eif2b1 PE=2 SV=1 228 382 3.0E-08
sp|Q99LC8|EI2BA_MOUSE Translation initiation factor eIF-2B subunit alpha OS=Mus musculus GN=Eif2b1 PE=1 SV=1 228 382 7.0E-08
sp|Q0IIF2|EI2BA_BOVIN Translation initiation factor eIF-2B subunit alpha OS=Bos taurus GN=EIF2B1 PE=2 SV=1 228 382 8.0E-08
sp|Q99LD9|EI2BB_MOUSE Translation initiation factor eIF-2B subunit beta OS=Mus musculus GN=Eif2b2 PE=1 SV=1 1 104 1.0E-07
sp|Q4R4V8|EI2BA_MACFA Translation initiation factor eIF-2B subunit alpha OS=Macaca fascicularis GN=EIF2B1 PE=2 SV=1 228 382 3.0E-07
sp|D4GV73|R15PI_HALVD Ribose 1,5-bisphosphate isomerase OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) GN=HVO_0966 PE=1 SV=1 219 443 5.0E-07
sp|Q62818|EI2BB_RAT Translation initiation factor eIF-2B subunit beta OS=Rattus norvegicus GN=Eif2b2 PE=2 SV=1 20 104 1.0E-06
sp|Q5RAR0|EI2BA_PONAB Translation initiation factor eIF-2B subunit alpha OS=Pongo abelii GN=EIF2B1 PE=2 SV=2 228 382 1.0E-06
sp|Q14232|EI2BA_HUMAN Translation initiation factor eIF-2B subunit alpha OS=Homo sapiens GN=EIF2B1 PE=1 SV=1 228 382 1.0E-06
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GO

GO Term Description Terminal node
GO:0044237 cellular metabolic process Yes
GO:0008152 metabolic process No
GO:0009987 cellular process No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 61 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 70.26 38.43 102.08
CcL In ants, during behavior modification 122.99 64.02 181.96
CcD In ants, recently dead 126.76 67.81 185.71

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.012243 yes
SC16a CcD 0.007782 yes
CcL CcD 0.919176 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|305
MPSAAAGHAPDLENYLKSLKSQSLEAAIERLISLLKRRQIRGSEACAVATAHILLQVVARAKWQDADGLLEKVCA
TGRRLVEAQPTELVVANIVRRVLALIRDEAAEDRNEPSSEAPSEAPFTPTDGSTPARSWSPPQTVARQDSAGDLA
SPSATSHVPSRAGLFPSYSSANLPKTLFHLLSASPPSDVVTSMPSSFRNSGTSTPTGRGGQANSQENTLRSEVID
GIEEILDEISQVDDQIAAQAEAQIHPGDHVLIHRLSPSVERFILRAALKRRFTVLMTAEAPRVRKHQDSQAMAAF
QKRLSTAGIPAIVLRSAALTAYMPRIDKVVLSARAILANGGVVAESGAATVARAAKEAGSAVVALAGVYKLSPEH
PSDEESVIEWASPSTYVGFDDGPLVEGIEVRTAATELVPPGLVDMYMTNLGTHSRDHLASLIADHYNQEDAGFHL
PSDG
Coding >Ophio5|305
ATGCCATCGGCCGCTGCGGGCCACGCGCCCGATCTCGAAAATTACCTCAAGTCGCTCAAGAGCCAATCGCTGGAA
GCAGCCATCGAGAGACTCATATCCCTCCTGAAGCGTCGACAGATCCGCGGTTCCGAAGCCTGCGCCGTCGCTACC
GCCCATATCCTTTTACAGGTCGTCGCCAGAGCCAAGTGGCAGGATGCCGACGGCTTGCTCGAAAAAGTCTGCGCC
ACGGGCCGTCGTCTGGTCGAGGCACAGCCGACGGAACTGGTTGTTGCCAACATCGTTCGTCGCGTCCTCGCTTTG
ATTCGCGATGAGGCAGCAGAGGATCGAAATGAGCCGTCGAGCGAGGCTCCCAGCGAGGCGCCCTTTACGCCAACA
GATGGCTCGACTCCGGCCCGGAGCTGGTCGCCGCCTCAGACGGTCGCCAGGCAGGACTCGGCTGGTGACTTGGCC
TCGCCTTCCGCGACTTCACATGTGCCGTCTCGCGCTGGTCTTTTCCCGTCGTATAGCTCGGCCAACCTGCCCAAG
ACGTTGTTCCACCTGCTGTCCGCGTCGCCTCCGTCCGACGTCGTCACCTCTATGCCCTCCTCGTTTCGAAACTCG
GGCACCTCCACACCCACCGGCAGAGGCGGTCAGGCCAACAGCCAGGAGAACACGCTTCGGTCCGAGGTCATCGAC
GGCATCGAGGAGATACTCGACGAAATCAGCCAGGTCGATGACCAGATCGCCGCCCAGGCCGAGGCGCAGATCCAC
CCGGGAGACCACGTCCTCATCCACCGTCTCTCGCCCTCCGTCGAGCGCTTCATTCTCCGCGCCGCTCTCAAGCGC
CGCTTCACCGTCCTCATGACGGCCGAGGCGCCTCGCGTCCGGAAACACCAGGACTCCCAGGCCATGGCCGCCTTT
CAAAAGAGGCTCTCCACAGCCGGCATCCCGGCCATCGTCCTTCGGAGCGCAGCCCTGACAGCCTACATGCCACGC
ATCGACAAAGTCGTTCTCAGCGCACGCGCCATCTTAGCCAATGGCGGCGTCGTCGCCGAGTCCGGCGCGGCGACG
GTAGCACGCGCTGCCAAGGAAGCCGGCAGCGCCGTCGTCGCCCTCGCCGGCGTCTACAAACTCAGCCCGGAGCAT
CCGTCGGACGAGGAGTCGGTCATCGAATGGGCCAGTCCGTCGACGTATGTCGGCTTCGACGACGGGCCCCTGGTC
GAGGGGATCGAGGTCCGGACCGCGGCGACGGAGCTGGTGCCGCCCGGGCTCGTTGACATGTACATGACGAACCTG
GGGACGCACTCGCGTGATCACTTGGCCAGTCTCATCGCGGACCACTACAATCAGGAGGATGCTGGCTTCCATCTG
CCCAGCGACGGA
Transcript >Ophio5|305
ATGCCATCGGCCGCTGCGGGCCACGCGCCCGATCTCGAAAATTACCTCAAGTCGCTCAAGAGCCAATCGCTGGAA
GCAGCCATCGAGAGACTCATATCCCTCCTGAAGCGTCGACAGATCCGCGGTTCCGAAGCCTGCGCCGTCGCTACC
GCCCATATCCTTTTACAGGTCGTCGCCAGAGCCAAGTGGCAGGATGCCGACGGCTTGCTCGAAAAAGTCTGCGCC
ACGGGCCGTCGTCTGGTCGAGGCACAGCCGACGGAACTGGTTGTTGCCAACATCGTTCGTCGCGTCCTCGCTTTG
ATTCGCGATGAGGCAGCAGAGGATCGAAATGAGCCGTCGAGCGAGGCTCCCAGCGAGGCGCCCTTTACGCCAACA
GATGGCTCGACTCCGGCCCGGAGCTGGTCGCCGCCTCAGACGGTCGCCAGGCAGGACTCGGCTGGTGACTTGGCC
TCGCCTTCCGCGACTTCACATGTGCCGTCTCGCGCTGGTCTTTTCCCGTCGTATAGCTCGGCCAACCTGCCCAAG
ACGTTGTTCCACCTGCTGTCCGCGTCGCCTCCGTCCGACGTCGTCACCTCTATGCCCTCCTCGTTTCGAAACTCG
GGCACCTCCACACCCACCGGCAGAGGCGGTCAGGCCAACAGCCAGGAGAACACGCTTCGGTCCGAGGTCATCGAC
GGCATCGAGGAGATACTCGACGAAATCAGCCAGGTCGATGACCAGATCGCCGCCCAGGCCGAGGCGCAGATCCAC
CCGGGAGACCACGTCCTCATCCACCGTCTCTCGCCCTCCGTCGAGCGCTTCATTCTCCGCGCCGCTCTCAAGCGC
CGCTTCACCGTCCTCATGACGGCCGAGGCGCCTCGCGTCCGGAAACACCAGGACTCCCAGGCCATGGCCGCCTTT
CAAAAGAGGCTCTCCACAGCCGGCATCCCGGCCATCGTCCTTCGGAGCGCAGCCCTGACAGCCTACATGCCACGC
ATCGACAAAGTCGTTCTCAGCGCACGCGCCATCTTAGCCAATGGCGGCGTCGTCGCCGAGTCCGGCGCGGCGACG
GTAGCACGCGCTGCCAAGGAAGCCGGCAGCGCCGTCGTCGCCCTCGCCGGCGTCTACAAACTCAGCCCGGAGCAT
CCGTCGGACGAGGAGTCGGTCATCGAATGGGCCAGTCCGTCGACGTATGTCGGCTTCGACGACGGGCCCCTGGTC
GAGGGGATCGAGGTCCGGACCGCGGCGACGGAGCTGGTGCCGCCCGGGCTCGTTGACATGTACATGACGAACCTG
GGGACGCACTCGCGTGATCACTTGGCCAGTCTCATCGCGGACCACTACAATCAGGAGGATGCTGGCTTCCATCTG
CCCAGCGACGGATAA
Gene >Ophio5|305
ATGCCATCGGCCGCTGCGGGCCACGCGCCCGATCTCGAAAATTACCTCAAGTCGCTCAAGAGCCAATCGCTGGAA
GCAGCCATCGAGAGACTCATATCGTACGTCCGAGAGGCTCACACGACTCTTTTCCTCTTTTGACCACAGCGTTGC
AGCCTCCTGAAGCGTCGACAGATCCGCGGTTCCGAAGCCTGCGCCGTCGCTACCGCCCATATCCTTTTACAGGTC
GTCGCCAGAGCCAAGTGGCAGGATGCCGACGGCTTGCTCGAAAAAGTCTGCGCCACGGGCCGTCGTCTGGTCGAG
GCACAGCCGACGGAACTGGTTGTTGCCAACATCGTTCGTCGCGTCCTCGCTTTGATTCGCGATGAGGCAGCAGAG
GATCGAAATGAGCCGTCGAGCGAGGCTCCCAGCGAGGCGCCCTTTACGCCAACAGATGGCTCGACTCCGGCCCGG
AGCTGGTCGCCGCCTCAGACGGTCGCCAGGCAGGACTCGGCTGGTGACTTGGCCTCGCCTTCCGCGACTTCACAT
GTGCCGTCTCGCGCTGGTCTTTTCCCGTCGTATAGCTCGGCCAACCTGCCCAAGACGTTGTTCCACCTGCTGTCC
GCGTCGCCTCCGTCCGACGTCGTCACCTCTATGCCCTCCTCGTTTCGAAACTCGGGCACCTCCACACCCACCGGC
AGAGGCGGTCAGGCCAACAGCCAGGAGAACACGCTTCGGTCCGAGGTCATCGACGGCATCGAGGAGATACTCGAC
GAAATCAGCCAGGTCGATGACCAGATCGCCGCCCAGGCCGAGGCGCAGATCCACCCGGGAGACCACGTCCTCATC
CACCGTCTCTCGCCCTCCGTCGAGCGCTTCATTCTCCGCGCCGCTCTCAAGCGCCGCTTCACCGTCCTCATGACG
GCCGAGGCGCCTCGCGTCCGGAAACACCAGGACTCCCAGGCCATGGCCGCCTTTCAAAAGAGGCTCTCCACAGCC
GGCATCCCGGCCATCGTCCTTCGGAGCGCAGCCCTGACAGCCTACATGCCACGCATCGACAAAGTCGTTCTCAGC
GCACGCGCCATCTTAGCCAATGGCGGCGTCGTCGCCGAGTCCGGCGCGGCGACGGTAGCACGCGCTGCCAAGGAA
GCCGGCAGCGCCGTCGTCGCCCTCGCCGGCGTCTACAAACTCAGCCCGGAGCATCCGTCGGACGAGGAGTCGGTC
ATCGAATGGGCCAGTCCGTCGACGTATGTCGGCTTCGACGACGGGCCCCTGGTCGAGGGGATCGAGGTCCGGACC
GCGGCGACGGAGCTGGTGCCGCCCGGGCTCGTTGACATGTACATGACGAACCTGTAAGTGTCGAATGCTTAGCCA
TCTGCACTTCCCGGCTGACTTGATTTTCAGGGGGACGCACTCGCGTGATCACTTGGCCAGTCTCATCGCGGACCA
CTACAATCAGGAGGATGCTGGCTTCCATCTGCCCAGCGACGGATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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