© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3037 |
| Gene name | |
| Location | scaffold_240:27278..28106 |
| Strand | - |
| Gene length (bp) | 828 |
| Transcript length (bp) | 738 |
| Coding sequence length (bp) | 735 |
| Protein length (aa) | 245 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00005 | ABC_tran | ABC transporter | 1.2E-05 | 141 | 234 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08234|YO075_YEAST | Uncharacterized ABC transporter ATP-binding protein/permease YOL075C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL075C PE=1 SV=3 | 110 | 236 | 2.0E-19 |
| sp|Q8RWI9|AB15G_ARATH | ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2 | 128 | 243 | 6.0E-19 |
| sp|Q9M2V5|AB18G_ARATH | ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1 | 125 | 236 | 1.0E-18 |
| sp|Q9M2V7|AB16G_ARATH | ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2 | 125 | 236 | 2.0E-18 |
| sp|Q9C8K2|AB12G_ARATH | ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1 | 128 | 243 | 6.0E-18 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08234|YO075_YEAST | Uncharacterized ABC transporter ATP-binding protein/permease YOL075C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL075C PE=1 SV=3 | 110 | 236 | 2.0E-19 |
| sp|Q8RWI9|AB15G_ARATH | ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2 | 128 | 243 | 6.0E-19 |
| sp|Q9M2V5|AB18G_ARATH | ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1 | 125 | 236 | 1.0E-18 |
| sp|Q9M2V7|AB16G_ARATH | ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2 | 125 | 236 | 2.0E-18 |
| sp|Q9C8K2|AB12G_ARATH | ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1 | 128 | 243 | 6.0E-18 |
| sp|O80946|AB1G_ARATH | ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1 | 125 | 236 | 2.0E-17 |
| sp|Q9M3D6|AB19G_ARATH | ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1 | 125 | 236 | 2.0E-17 |
| sp|B8ALI0|AB5G_ORYSI | ABC transporter G family member 5 OS=Oryza sativa subsp. indica GN=OsI_11044 PE=3 SV=1 | 125 | 236 | 8.0E-17 |
| sp|Q8H8V7|AB5G_ORYSJ | ABC transporter G family member 5 OS=Oryza sativa subsp. japonica GN=RCN1 PE=1 SV=1 | 125 | 236 | 8.0E-17 |
| sp|Q9ZU35|AB7G_ARATH | ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=2 SV=1 | 147 | 236 | 9.0E-17 |
| sp|Q8RXN0|AB11G_ARATH | ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1 | 127 | 243 | 1.0E-16 |
| sp|Q9FNB5|AB6G_ARATH | ABC transporter G family member 6 OS=Arabidopsis thaliana GN=ABCG6 PE=2 SV=1 | 125 | 236 | 2.0E-16 |
| sp|Q80W57|ABCG2_RAT | ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1 | 145 | 236 | 3.0E-16 |
| sp|Q4GZT4|ABCG2_BOVIN | ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=3 SV=2 | 145 | 236 | 6.0E-16 |
| sp|Q9M2V6|AB17G_ARATH | ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1 | 125 | 236 | 8.0E-16 |
| sp|Q7TMS5|ABCG2_MOUSE | ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=1 SV=1 | 145 | 236 | 1.0E-15 |
| sp|Q8MIB3|ABCG2_PIG | ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1 | 145 | 236 | 1.0E-15 |
| sp|Q9LFG8|AB20G_ARATH | ABC transporter G family member 20 OS=Arabidopsis thaliana GN=ABCG20 PE=2 SV=1 | 128 | 236 | 1.0E-15 |
| sp|Q9C8J8|AB13G_ARATH | ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1 | 127 | 243 | 2.0E-15 |
| sp|Q9ZUT0|AB2G_ARATH | ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1 | 128 | 236 | 3.0E-15 |
| sp|Q5MB13|ABCG2_MACMU | ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1 | 145 | 236 | 3.0E-15 |
| sp|P58428|ABCG8_RAT | ATP-binding cassette sub-family G member 8 OS=Rattus norvegicus GN=Abcg8 PE=2 SV=2 | 126 | 236 | 2.0E-14 |
| sp|Q9UNQ0|ABCG2_HUMAN | ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3 | 145 | 236 | 3.0E-14 |
| sp|Q54T02|ABCGO_DICDI | ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1 | 147 | 236 | 3.0E-14 |
| sp|Q9DBM0|ABCG8_MOUSE | ATP-binding cassette sub-family G member 8 OS=Mus musculus GN=Abcg8 PE=2 SV=1 | 147 | 236 | 1.0E-13 |
| sp|Q55DW4|ABCG1_DICDI | ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1 | 145 | 236 | 1.0E-13 |
| sp|Q9H221|ABCG8_HUMAN | ATP-binding cassette sub-family G member 8 OS=Homo sapiens GN=ABCG8 PE=1 SV=1 | 147 | 236 | 1.0E-12 |
| sp|Q93YS4|AB22G_ARATH | ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1 | 147 | 236 | 2.0E-12 |
| sp|Q9FT51|AB27G_ARATH | ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1 | 147 | 236 | 4.0E-12 |
| sp|Q84TH5|AB25G_ARATH | ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1 | 147 | 236 | 9.0E-12 |
| sp|Q55DA0|ABCGM_DICDI | ABC transporter G family member 22 OS=Dictyostelium discoideum GN=abcG22 PE=2 SV=1 | 145 | 236 | 1.0E-11 |
| sp|Q9LK50|AB26G_ARATH | ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=2 | 147 | 236 | 1.0E-11 |
| sp|Q08234|YO075_YEAST | Uncharacterized ABC transporter ATP-binding protein/permease YOL075C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL075C PE=1 SV=3 | 149 | 236 | 4.0E-11 |
| sp|D4AYW0|ABCG1_ARTBC | ABC transporter G family member ARB_01379 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01379 PE=1 SV=1 | 147 | 236 | 6.0E-11 |
| sp|Q99PE7|ABCG5_RAT | ATP-binding cassette sub-family G member 5 OS=Rattus norvegicus GN=Abcg5 PE=2 SV=3 | 129 | 236 | 2.0E-10 |
| sp|Q99PE8|ABCG5_MOUSE | ATP-binding cassette sub-family G member 5 OS=Mus musculus GN=Abcg5 PE=1 SV=1 | 129 | 236 | 2.0E-10 |
| sp|Q9C6W5|AB14G_ARATH | ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1 | 147 | 236 | 2.0E-10 |
| sp|Q9MAH4|AB10G_ARATH | ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1 | 147 | 236 | 3.0E-10 |
| sp|Q9SZR9|AB9G_ARATH | ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=3 SV=2 | 147 | 236 | 4.0E-10 |
| sp|Q9SIT6|AB5G_ARATH | ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1 | 147 | 236 | 4.0E-10 |
| sp|Q7XA72|AB21G_ARATH | ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2 | 127 | 236 | 6.0E-10 |
| sp|Q9FF46|AB28G_ARATH | ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1 | 122 | 234 | 1.0E-09 |
| sp|Q8T685|ABCGC_DICDI | ABC transporter G family member 12 OS=Dictyostelium discoideum GN=abcG12 PE=3 SV=1 | 129 | 236 | 1.0E-09 |
| sp|Q86HQ2|ABCG8_DICDI | ABC transporter G family member 8 OS=Dictyostelium discoideum GN=abcG8 PE=3 SV=1 | 129 | 236 | 2.0E-09 |
| sp|Q9H222|ABCG5_HUMAN | ATP-binding cassette sub-family G member 5 OS=Homo sapiens GN=ABCG5 PE=1 SV=1 | 145 | 236 | 2.0E-09 |
| sp|Q9MAG3|AB24G_ARATH | ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=2 SV=2 | 127 | 236 | 4.0E-09 |
| sp|Q3E9B8|AB23G_ARATH | ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1 | 104 | 236 | 4.0E-09 |
| sp|Q9SJK6|WBC30_ARATH | Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=1 SV=3 | 147 | 236 | 1.0E-08 |
| sp|P25371|ADP1_YEAST | Probable ATP-dependent permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADP1 PE=1 SV=2 | 147 | 236 | 1.0E-08 |
| sp|Q8T686|ABCG7_DICDI | ABC transporter G family member 7 OS=Dictyostelium discoideum GN=abcG7 PE=3 SV=1 | 125 | 236 | 3.0E-08 |
| sp|P32568|SNQ2_YEAST | Protein SNQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNQ2 PE=1 SV=2 | 145 | 236 | 4.0E-08 |
| sp|Q8T689|ABCG4_DICDI | ABC transporter G family member 4 OS=Dictyostelium discoideum GN=abcG4 PE=3 SV=1 | 128 | 236 | 9.0E-08 |
| sp|Q11180|WHT1_CAEEL | ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2 | 147 | 236 | 1.0E-07 |
| sp|Q8T690|ABCG3_DICDI | ABC transporter G family member 3 OS=Dictyostelium discoideum GN=abcG3 PE=3 SV=1 | 128 | 236 | 3.0E-07 |
| sp|Q7PC85|AB38G_ARATH | ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1 | 147 | 236 | 5.0E-07 |
| sp|O65934|ABC1_MYCTU | ABC transporter ATP-binding/permease protein Rv1747 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv1747 PE=1 SV=1 | 147 | 236 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0017076 | purine nucleotide binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 1.76 | 0.00 | 3.64 |
| CcL | In ants, during behavior modification | 3.31 | 0.09 | 6.52 |
| CcD | In ants, recently dead | 2.38 | 0.00 | 4.76 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.243994 | no |
| SC16a | CcD | 0.601632 | no |
| CcL | CcD | 0.544904 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3037 MPRIDSLVHYTSQSCYLLTLYLDIVCNSQNAANGLRLLKAIYTMTATWGNKVARNRRQATGENSFEERSAASYKP TGHLANRRPPLPDHDSISLNDVAPVYVQIRKLSVSINHKLSTPPSRPAWSQAGTATLNGQLGVQTYDMPMMQQDI LLLTLTARMTLQYAAEMPLPPSTPTCACQRVIGGVIRELGLKDCAEACVGSSQHRGCSGGDKRRVSIVVPLPATP SVLFLDEPSTASILAAPFSL |
| Coding | >Ophio5|3037 ATGCCACGCATCGATTCTTTGGTTCACTACACATCCCAATCTTGTTATCTTCTTACTCTATACCTTGATATTGTA TGCAACTCACAAAACGCCGCCAACGGACTTCGGCTGCTCAAGGCGATTTATACTATGACTGCCACGTGGGGCAAC AAAGTCGCCCGCAATCGACGTCAGGCAACCGGCGAAAATTCCTTCGAGGAAAGATCAGCCGCCTCTTACAAGCCC ACTGGTCACTTAGCGAATCGTCGACCACCGCTTCCTGATCATGACAGCATTTCCCTCAACGACGTCGCTCCTGTC TACGTACAGATCCGCAAGCTCTCGGTATCCATTAACCACAAACTGTCAACACCTCCCTCCCGGCCAGCATGGAGC CAGGCGGGCACGGCAACATTAAACGGCCAGCTTGGCGTGCAAACGTACGATATGCCTATGATGCAGCAGGATATC CTCCTGCTGACCTTGACTGCCCGAATGACTCTACAGTACGCGGCGGAGATGCCACTGCCGCCTAGCACGCCGACC TGCGCTTGCCAGAGGGTCATTGGAGGAGTCATTCGTGAGCTTGGTCTCAAGGACTGCGCCGAGGCGTGCGTTGGC AGTAGCCAGCATCGGGGTTGCTCCGGTGGCGACAAGAGGCGTGTGAGCATCGTAGTGCCGCTGCCCGCCACCCCG TCTGTTCTCTTCCTCGACGAGCCGAGCACGGCTTCGATTCTAGCAGCGCCCTTCAGCTTG |
| Transcript | >Ophio5|3037 ATGCCACGCATCGATTCTTTGGTTCACTACACATCCCAATCTTGTTATCTTCTTACTCTATACCTTGATATTGTA TGCAACTCACAAAACGCCGCCAACGGACTTCGGCTGCTCAAGGCGATTTATACTATGACTGCCACGTGGGGCAAC AAAGTCGCCCGCAATCGACGTCAGGCAACCGGCGAAAATTCCTTCGAGGAAAGATCAGCCGCCTCTTACAAGCCC ACTGGTCACTTAGCGAATCGTCGACCACCGCTTCCTGATCATGACAGCATTTCCCTCAACGACGTCGCTCCTGTC TACGTACAGATCCGCAAGCTCTCGGTATCCATTAACCACAAACTGTCAACACCTCCCTCCCGGCCAGCATGGAGC CAGGCGGGCACGGCAACATTAAACGGCCAGCTTGGCGTGCAAACGTACGATATGCCTATGATGCAGCAGGATATC CTCCTGCTGACCTTGACTGCCCGAATGACTCTACAGTACGCGGCGGAGATGCCACTGCCGCCTAGCACGCCGACC TGCGCTTGCCAGAGGGTCATTGGAGGAGTCATTCGTGAGCTTGGTCTCAAGGACTGCGCCGAGGCGTGCGTTGGC AGTAGCCAGCATCGGGGTTGCTCCGGTGGCGACAAGAGGCGTGTGAGCATCGTAGTGCCGCTGCCCGCCACCCCG TCTGTTCTCTTCCTCGACGAGCCGAGCACGGCTTCGATTCTAGCAGCGCCCTTCAGCTTGTAA |
| Gene | >Ophio5|3037 ATGCCACGCATCGATTCTTTGGTTCACTACACATCCCAATCTTGTTATCTTCTTACTCTATACCTTGATATTGTA TGCAACTCACAAAACGCCGCCAACGGACTTCGGCTGCTCAAGGCGATTTATACTATGACTGCCACGTGGGGCAAC AAAGTCGCCCGCAATCGACGTCAGGCAACCGGCGAAAATTCCTTCGAGGAAAGATCAGCCGCCTCTTACAAGCCC ACTGGTCACTTAGCGAATCGTCGACCACCGCTTCCTGATCATGACAGCATTTCCCTCAACGACGTCGCTCCTGTC TACGTACAGATCCGCAAGCTCTCGGTATCCATTAACCACAAACTGTCAACGTATCGAGGCCGTTTAGCCACAAGG CTATTCGGGAAGCAAAGTGCCGCAACCCCTTGACAACGACGCTGCTGCTGCACTAGTGGCGGCAGACCTCCCTCC CGGCCAGCATGGAGCCAGGCGGGCACGGCAACATTAAACGGCCAGCTTGGCGTGCAAACGTACGATATGCCTATG ATGCAGCAGGATATCCTCCTGCTGACCTTGACTGCCCGAATGACTCTACAGTACGCGGCGGAGATGCCACTGCCG CCTAGCACGCCGACCTGCGCTTGCCAGAGGGTCATTGGAGGAGTCATTCGTGAGCTTGGTCTCAAGGACTGCGCC GAGGCGTGCGTTGGCAGTAGCCAGCATCGGGGTTGCTCCGGTGGCGACAAGAGGCGTGTGAGCATCGTAGTGCCG CTGCCCGCCACCCCGTCTGTTCTCTTCCTCGACGAGCCGAGCACGGCTTCGATTCTAGCAGCGCCCTTCAGCTTG TAA |