Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3032
Gene name
Locationscaffold_240:17592..18382
Strand+
Gene length (bp)790
Transcript length (bp)720
Coding sequence length (bp)717
Protein length (aa) 239

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 19 0.5

Transmembrane Domains

Domain # Start End Length
1 17 39 22
2 49 71 22
3 112 134 22
4 138 160 22
5 167 185 18
6 205 227 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3032
MNAFNQSRAPPEYQDVAWIADTCKLLMGVGWTINYIGMISKSLKDRTYAMSIMALCCNFAWEITYAFIYPFGSHL
ERCVHYSGLLLNCGVMYTAIKNAPREWAHAPLVQRNLPVIFVVCISGWMSAHLALAAQIGPGLAQAWSAYGCQLL
LSVGGLCQLISRGHSRGASYFLWSSRLLGSLVLIPQDVLRYKFWRKDHEYMTSPLYVWFICIFLLLDGSYGICLW
LVRRFERENARKAM
Coding >Ophio5|3032
ATGAATGCTTTCAACCAATCCCGAGCTCCTCCCGAATACCAAGATGTTGCCTGGATCGCAGATACGTGCAAGCTG
CTCATGGGCGTCGGGTGGACCATCAACTACATTGGCATGATTAGCAAGTCATTGAAAGACAGGACCTACGCCATG
TCCATCATGGCCTTGTGCTGCAACTTTGCGTGGGAAATCACGTACGCTTTCATCTATCCTTTCGGCAGCCATCTG
GAGAGATGTGTTCACTACTCAGGTCTTTTGCTCAACTGCGGCGTCATGTACACTGCCATCAAGAACGCCCCGAGA
GAATGGGCACATGCGCCACTGGTTCAGCGAAACCTCCCAGTCATATTCGTTGTCTGCATTTCTGGCTGGATGTCG
GCACATCTGGCCTTGGCCGCGCAGATTGGCCCAGGCCTAGCCCAGGCGTGGAGTGCCTACGGGTGCCAGCTACTT
CTAAGCGTTGGCGGCTTATGCCAGCTGATCAGCCGAGGACATTCACGCGGGGCATCTTACTTTCTTTGGTCGTCA
CGTTTACTTGGATCACTCGTGCTCATTCCTCAAGACGTGTTGCGGTACAAGTTTTGGAGAAAAGATCATGAGTAC
ATGACTTCTCCCCTCTATGTTTGGTTTATCTGCATTTTTCTCCTTTTGGACGGGTCCTACGGCATCTGCCTGTGG
TTAGTCCGTCGTTTTGAGCGCGAAAACGCACGCAAGGCGATG
Transcript >Ophio5|3032
ATGAATGCTTTCAACCAATCCCGAGCTCCTCCCGAATACCAAGATGTTGCCTGGATCGCAGATACGTGCAAGCTG
CTCATGGGCGTCGGGTGGACCATCAACTACATTGGCATGATTAGCAAGTCATTGAAAGACAGGACCTACGCCATG
TCCATCATGGCCTTGTGCTGCAACTTTGCGTGGGAAATCACGTACGCTTTCATCTATCCTTTCGGCAGCCATCTG
GAGAGATGTGTTCACTACTCAGGTCTTTTGCTCAACTGCGGCGTCATGTACACTGCCATCAAGAACGCCCCGAGA
GAATGGGCACATGCGCCACTGGTTCAGCGAAACCTCCCAGTCATATTCGTTGTCTGCATTTCTGGCTGGATGTCG
GCACATCTGGCCTTGGCCGCGCAGATTGGCCCAGGCCTAGCCCAGGCGTGGAGTGCCTACGGGTGCCAGCTACTT
CTAAGCGTTGGCGGCTTATGCCAGCTGATCAGCCGAGGACATTCACGCGGGGCATCTTACTTTCTTTGGTCGTCA
CGTTTACTTGGATCACTCGTGCTCATTCCTCAAGACGTGTTGCGGTACAAGTTTTGGAGAAAAGATCATGAGTAC
ATGACTTCTCCCCTCTATGTTTGGTTTATCTGCATTTTTCTCCTTTTGGACGGGTCCTACGGCATCTGCCTGTGG
TTAGTCCGTCGTTTTGAGCGCGAAAACGCACGCAAGGCGATGTAA
Gene >Ophio5|3032
ATGAATGCTTTCAACCAATCCCGAGCTCCTCCCGAATACCAAGATGTTGCCTGGATCGCAGATACGTGCAAGCTG
CTCATGGGCGTCGGGTGGACCATCAACTACATTGGCATGATTAGCAAGTCATTGAAAGACAGGACCTACGCCATG
TCCATCATGGCCTTGTGCTGCAACTTTGCGTGGGAAATCACGTACGCTTTCATCTATCCTTTCGGCAGCCATCTG
GAGAGATGTGTTCACTACTCAGGTCTTTTGCTCAACTGCGGCGTCATGTACACTGCCATCAAGAACGCCCCGAGA
GAATGGGCACATGCGCCACTGGTTCAGCGAAACCTCCCAGTCATATTCGTTGTCTGCATTTCTGGCTGGATGTCG
GCACATCTGGCCTTGGCCGCGCAGATTGGCCCAGGCCTAGCCCAGGCGTGGAGTGCCTACGGGTGCCAGCTACTT
CTAAGCGTTGGCGGCTTATGCCAGCTGATCAGCCGAGGACATTCACGCGGGGCATCTTACTTTCTTTGGTATGTG
TGTCTTGCAATTGGACACGACTCTCTAGTACTTGAAATCCTGACGATTTAAATCACCTACTAGGTCGTCACGTTT
ACTTGGATCACTCGTGCTCATTCCTCAAGACGTGTTGCGGTACAAGTTTTGGAGAAAAGATCATGAGTACATGAC
TTCTCCCCTCTATGTTTGGTTTATCTGCATTTTTCTCCTTTTGGACGGGTCCTACGGCATCTGCCTGTGGTTAGT
CCGTCGTTTTGAGCGCGAAAACGCACGCAAGGCGATGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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