© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|3008 |
| Gene name | |
| Location | scaffold_24:32472..33774 |
| Strand | - |
| Gene length (bp) | 1302 |
| Transcript length (bp) | 1173 |
| Coding sequence length (bp) | 1170 |
| Protein length (aa) | 390 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03839 | Sec62 | Translocation protein Sec62 | 9.4E-63 | 132 | 318 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q99161|SEC62_YARLI | Translocation protein SEC62 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC62 PE=3 SV=2 | 104 | 326 | 2.0E-60 |
| sp|O13787|SEC62_SCHPO | Translocation protein sec62 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec62 PE=3 SV=1 | 107 | 388 | 1.0E-53 |
| sp|Q5AI21|SEC62_CANAL | Translocation protein SEC62 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC62 PE=3 SV=1 | 93 | 363 | 7.0E-33 |
| sp|Q6CLZ9|SEC62_KLULA | Translocation protein SEC62 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC62 PE=3 SV=1 | 103 | 338 | 3.0E-31 |
| sp|P21825|SEC62_YEAST | Translocation protein SEC62 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC62 PE=1 SV=2 | 107 | 319 | 1.0E-27 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q99161|SEC62_YARLI | Translocation protein SEC62 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC62 PE=3 SV=2 | 104 | 326 | 2.0E-60 |
| sp|O13787|SEC62_SCHPO | Translocation protein sec62 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec62 PE=3 SV=1 | 107 | 388 | 1.0E-53 |
| sp|Q5AI21|SEC62_CANAL | Translocation protein SEC62 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC62 PE=3 SV=1 | 93 | 363 | 7.0E-33 |
| sp|Q6CLZ9|SEC62_KLULA | Translocation protein SEC62 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC62 PE=3 SV=1 | 103 | 338 | 3.0E-31 |
| sp|P21825|SEC62_YEAST | Translocation protein SEC62 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC62 PE=1 SV=2 | 107 | 319 | 1.0E-27 |
| sp|Q6FRU9|SEC62_CANGA | Translocation protein SEC62 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC62 PE=3 SV=1 | 107 | 317 | 1.0E-25 |
| sp|Q6BI99|SEC62_DEBHA | Translocation protein SEC62 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SEC62 PE=3 SV=1 | 107 | 343 | 2.0E-20 |
| sp|Q75D26|SEC62_ASHGO | Translocation protein SEC62 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC62 PE=3 SV=2 | 110 | 320 | 2.0E-17 |
| sp|Q5R4Q3|SEC62_PONAB | Translocation protein SEC62 OS=Pongo abelii GN=SEC62 PE=2 SV=1 | 220 | 363 | 2.0E-17 |
| sp|Q99442|SEC62_HUMAN | Translocation protein SEC62 OS=Homo sapiens GN=SEC62 PE=1 SV=1 | 220 | 364 | 3.0E-17 |
| sp|Q8BU14|SEC62_MOUSE | Translocation protein SEC62 OS=Mus musculus GN=Sec62 PE=1 SV=1 | 220 | 335 | 3.0E-17 |
| sp|Q5F3A1|SEC62_CHICK | Translocation protein SEC62 OS=Gallus gallus GN=SEC62 PE=2 SV=1 | 220 | 319 | 4.0E-15 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015031 | protein transport | Yes |
| GO:0030176 | integral component of endoplasmic reticulum membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0031300 | intrinsic component of organelle membrane | No |
| GO:0031227 | intrinsic component of endoplasmic reticulum membrane | No |
| GO:0016021 | integral component of membrane | No |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0033036 | macromolecule localization | No |
| GO:0009987 | cellular process | No |
| GO:0051641 | cellular localization | No |
| GO:0008104 | protein localization | No |
| GO:0005575 | cellular_component | No |
| GO:0071702 | organic substance transport | No |
| GO:0031301 | integral component of organelle membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 233 | 255 | 22 |
| 2 | 262 | 284 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 204.82 | 106.22 | 303.43 |
| CcL | In ants, during behavior modification | 163.13 | 76.41 | 249.84 |
| CcD | In ants, recently dead | 129.46 | 69.53 | 189.38 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.394535 | no |
| SC16a | CcD | 0.043078 | yes |
| CcL | CcD | 0.371941 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|3008 MSAQGPPFPPGQGPTPEQIAEMQRRVAEDAQKAGMSVPEFIAHIKKQTMQQQQQRMRMQQQQQHSHDGHHCCDHD HGHDEDDDDDDHHHHSQGQSQPITPGPPNPKAIAVAKFLKSQELKPRTCILNGDRKDMFKVKRALRALQSPAYEK ARKKNPLLPEVNDQATLENTFKLLPLSMLALRVSKIETELGPNGKKPKRVKGQWNVRVEQQQEAMQDMYYVWLWE GSQIKRQLYAALALVIIFIIVLYPLWPLKLRQGVYYLSWGLLGLLGLFFLMAIFRVILFCVTYFAVPPGLWLYPN LWEDVSFMDSFRPVWAWHETAEEKKLKKKSKKKARTAGSGAGTNATFAAATGQVAPTTATTTGTDTQIKTGDMHQ RNYVAPKVEELADDE |
| Coding | >Ophio5|3008 ATGTCTGCGCAGGGGCCACCGTTTCCGCCCGGCCAGGGCCCGACGCCGGAGCAGATCGCCGAAATGCAGCGAAGG GTCGCCGAGGACGCGCAAAAGGCGGGCATGTCGGTGCCAGAGTTCATCGCCCACATCAAGAAGCAAACGATGCAG CAGCAGCAGCAGCGCATGCGTATGCAGCAGCAACAGCAGCATTCGCACGACGGACACCACTGCTGCGACCATGAC CACGGCCACGACGAAGACGATGATGATGACGATCACCATCACCACTCACAGGGCCAGTCCCAACCCATCACGCCA GGGCCCCCGAATCCCAAGGCTATCGCCGTTGCCAAATTCCTCAAGAGTCAAGAGTTGAAACCGCGCACCTGCATC CTAAATGGGGATCGAAAGGACATGTTTAAAGTCAAACGTGCTCTGCGGGCGCTGCAGTCGCCCGCCTACGAAAAA GCCCGGAAGAAGAATCCCCTACTGCCGGAGGTCAATGACCAGGCCACGCTCGAGAATACGTTCAAGCTACTGCCT CTGAGCATGCTTGCCTTGCGTGTTTCCAAGATTGAGACGGAGCTGGGTCCCAACGGCAAGAAGCCCAAGCGCGTA AAGGGCCAGTGGAATGTTCGCGTCGAACAGCAGCAAGAGGCGATGCAAGACATGTACTACGTCTGGCTGTGGGAG GGCAGCCAAATCAAGCGTCAGCTCTATGCGGCCCTGGCTCTCGTCATCATCTTCATCATCGTCCTATACCCGCTC TGGCCGTTGAAGCTGCGCCAGGGCGTCTACTACCTCAGTTGGGGTCTGCTGGGCCTGCTGGGCCTGTTCTTCCTA ATGGCCATCTTCCGTGTCATTCTCTTCTGTGTCACCTACTTCGCCGTCCCGCCCGGTCTCTGGCTCTACCCCAAT CTGTGGGAGGATGTCTCCTTCATGGACAGCTTCAGACCCGTCTGGGCCTGGCACGAGACGGCCGAGGAAAAGAAG TTGAAGAAGAAGTCGAAGAAGAAGGCCAGGACGGCCGGCTCCGGGGCCGGGACCAACGCCACGTTCGCTGCCGCT ACCGGCCAGGTAGCGCCGACGACAGCTACAACCACCGGCACCGACACGCAGATCAAGACAGGCGATATGCACCAG CGGAATTACGTCGCACCCAAGGTTGAGGAGCTAGCGGACGACGAG |
| Transcript | >Ophio5|3008 ATGTCTGCGCAGGGGCCACCGTTTCCGCCCGGCCAGGGCCCGACGCCGGAGCAGATCGCCGAAATGCAGCGAAGG GTCGCCGAGGACGCGCAAAAGGCGGGCATGTCGGTGCCAGAGTTCATCGCCCACATCAAGAAGCAAACGATGCAG CAGCAGCAGCAGCGCATGCGTATGCAGCAGCAACAGCAGCATTCGCACGACGGACACCACTGCTGCGACCATGAC CACGGCCACGACGAAGACGATGATGATGACGATCACCATCACCACTCACAGGGCCAGTCCCAACCCATCACGCCA GGGCCCCCGAATCCCAAGGCTATCGCCGTTGCCAAATTCCTCAAGAGTCAAGAGTTGAAACCGCGCACCTGCATC CTAAATGGGGATCGAAAGGACATGTTTAAAGTCAAACGTGCTCTGCGGGCGCTGCAGTCGCCCGCCTACGAAAAA GCCCGGAAGAAGAATCCCCTACTGCCGGAGGTCAATGACCAGGCCACGCTCGAGAATACGTTCAAGCTACTGCCT CTGAGCATGCTTGCCTTGCGTGTTTCCAAGATTGAGACGGAGCTGGGTCCCAACGGCAAGAAGCCCAAGCGCGTA AAGGGCCAGTGGAATGTTCGCGTCGAACAGCAGCAAGAGGCGATGCAAGACATGTACTACGTCTGGCTGTGGGAG GGCAGCCAAATCAAGCGTCAGCTCTATGCGGCCCTGGCTCTCGTCATCATCTTCATCATCGTCCTATACCCGCTC TGGCCGTTGAAGCTGCGCCAGGGCGTCTACTACCTCAGTTGGGGTCTGCTGGGCCTGCTGGGCCTGTTCTTCCTA ATGGCCATCTTCCGTGTCATTCTCTTCTGTGTCACCTACTTCGCCGTCCCGCCCGGTCTCTGGCTCTACCCCAAT CTGTGGGAGGATGTCTCCTTCATGGACAGCTTCAGACCCGTCTGGGCCTGGCACGAGACGGCCGAGGAAAAGAAG TTGAAGAAGAAGTCGAAGAAGAAGGCCAGGACGGCCGGCTCCGGGGCCGGGACCAACGCCACGTTCGCTGCCGCT ACCGGCCAGGTAGCGCCGACGACAGCTACAACCACCGGCACCGACACGCAGATCAAGACAGGCGATATGCACCAG CGGAATTACGTCGCACCCAAGGTTGAGGAGCTAGCGGACGACGAGTGA |
| Gene | >Ophio5|3008 ATGTCTGCGCAGGGGCCACCGTTTCCGCCCGGCCAGGGCCCGACGCCGGAGCAGATCGCCGAAATGCAGCGAAGG GTCGCCGAGGACGCGCAAAAGGCGGGCATGTCGGTGCCAGAGTTCATCGCCCACATCAAGAAGCAAACGATGCAG CAGCAGCAGCAGCGCATGCGTATGCAGCAGCAACAGCAGCATTCGCACGACGGACACCACTGCTGCGACCATGAC CACGGCCACGACGAAGACGATGATGATGACGATCACCATCACCACTCACAGGGCCAGTCCCAACCCATCACGCCA GGGCCCCCGAATCCCAAGGCTATCGCCGTTGCCAAATTCCTCAAGAGTCAAGAGTTGAAACCGCGCACCTGCATC CTAAATGGGGATCGAAAGGACATGTTTAAAGGCACGAGCTCGAAAATGGTACCCTTATAAGGCATTGAGACCACG GCTCGCTAACGGGTACGACAGTCAAACGTGCTCTGCGGGCGCTGCAGTCGCCCGCCTACGAAAAAGCCCGGAAGA AGAATCCCCTACTGCCGGAGGTCAATGACCAGGCCACGCTCGAGAATACGTTCAAGCTACTGCCTCTGAGCATGC TTGCCTTGCGTGTTTCCAAGATTGAGACGGAGCTGGGTCCCAACGGCAAGAAGCCCAAGCGCGTAAAGGGCCAGT GGAATGTTCGCGTCGAACAGCAGCAAGAGGCGATGCAAGACATGTACTACGTCTGGCTGTGGGAGGGCAGCCAAA TCAAGCGTCAGCTCTATGCGGCCCTGGCTCTCGTCATCATCTTCATCATCGTCCTATACCCGCTCTGGCCGTTGA AGCTGCGCCAGGGCGTCTACTACCTCAGTTGGGGTCTGCTGGGCCTGCTGGGCCTGTTCTTCCTAATGGCCATCT TCCGTGTCATTCTCTTCTGTGTCACCTACTTCGCCGTCCCGCCCGGTCTCTGGCTCTACCCCAATCTGTGGGAGG ATGTCTCCTTCATGGACAGCTTCAGACCCGTCTGGGCCTGGCACGAGGTAAGTTTGGAAACTTGGCCTTCTCGGC ATGCACCTGCCCCCGTACATACTGATGTCGCCGCAGACGGCCGAGGAAAAGAAGTTGAAGAAGAAGTCGAAGAAG AAGGCCAGGACGGCCGGCTCCGGGGCCGGGACCAACGCCACGTTCGCTGCCGCTACCGGCCAGGTAGCGCCGACG ACAGCTACAACCACCGGCACCGACACGCAGATCAAGACAGGCGATATGCACCAGCGGAATTACGTCGCACCCAAG GTTGAGGAGCTAGCGGACGACGAGTGA |