Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|3003
Gene name
Locationscaffold_24:20262..21589
Strand+
Gene length (bp)1327
Transcript length (bp)1002
Coding sequence length (bp)999
Protein length (aa) 333

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02453 Reticulon Reticulon 5.5E-35 79 237

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P53694|RTN1_SCHPO Reticulon-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rtn1 PE=1 SV=1 81 247 8.0E-14
sp|Q04947|RTN1_YEAST Reticulon-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTN1 PE=1 SV=1 79 329 2.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

Domain # Start End Length
1 92 114 22
2 118 140 22
3 177 199 22
4 203 225 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|3003
MSDLHDAPAAANGGGPLEAARTQSAAAYDSITNGPVAQSVKDHSAKASSELSSLAASRKTPANPAATGQPLTHYH
SFFSELLSWKNPRASAIAYVTIVSFIFAARYLDVIRWAFKLSWMALAVTVSSEVAGKLVLNHGLATQMRPRRYYT
VSRAAIDNMIGDVHELINFFVIEAQRILFAENVGASAAACFATFIAYYLLKLVPYWGLAVIATTIAFAAPLIYVN
NQELIDHHLKNASDMIGAQTAQVRDVAQKQAGQLAHMGKQYADDYSGKVQEMIRGRGATPTAATKPAPASKDVDF
PTPPTEEPLQAAHSEDKVPEAPVVPEEEPLIAS
Coding >Ophio5|3003
ATGTCTGACCTTCATGATGCGCCCGCCGCGGCCAACGGCGGTGGACCGCTCGAGGCTGCCAGGACTCAGTCCGCT
GCAGCATACGATTCGATAACCAACGGCCCTGTTGCGCAGAGCGTCAAGGACCACTCTGCAAAAGCCTCGTCCGAG
CTGTCCAGCTTGGCAGCCTCTCGCAAGACCCCTGCCAACCCTGCCGCTACCGGTCAGCCCCTAACACACTACCAC
TCCTTCTTCTCGGAGCTGCTGTCGTGGAAGAACCCTCGTGCCAGCGCCATTGCCTACGTTACCATTGTGTCCTTC
ATTTTCGCCGCTAGATACCTCGATGTGATTCGTTGGGCGTTCAAGCTGTCGTGGATGGCCCTGGCCGTCACCGTC
AGTTCCGAGGTTGCCGGCAAACTCGTCCTGAACCACGGCCTCGCCACCCAGATGAGGCCTCGCAGATACTACACT
GTCTCGCGAGCGGCCATCGACAACATGATCGGCGACGTCCATGAGCTCATCAACTTTTTCGTCATCGAGGCCCAG
CGCATCCTCTTCGCCGAGAATGTCGGCGCCTCAGCCGCGGCTTGTTTCGCCACCTTCATCGCCTACTATCTCCTC
AAGCTCGTACCGTACTGGGGTCTTGCCGTCATCGCCACGACGATTGCTTTTGCCGCTCCTCTTATCTACGTCAAC
AACCAGGAGCTCATTGATCACCACCTCAAGAATGCGTCGGACATGATTGGTGCTCAGACGGCTCAGGTTCGGGAC
GTGGCCCAGAAGCAGGCCGGTCAGCTCGCCCACATGGGCAAGCAGTACGCCGACGACTACTCGGGCAAGGTTCAG
GAGATGATTCGTGGTCGCGGAGCTACTCCCACCGCCGCGACGAAGCCGGCACCCGCTTCCAAGGATGTCGACTTC
CCTACCCCGCCGACCGAGGAGCCTCTCCAGGCTGCCCATTCCGAGGATAAGGTCCCGGAAGCCCCCGTCGTGCCG
GAGGAGGAGCCCTTGATCGCCTCC
Transcript >Ophio5|3003
ATGTCTGACCTTCATGATGCGCCCGCCGCGGCCAACGGCGGTGGACCGCTCGAGGCTGCCAGGACTCAGTCCGCT
GCAGCATACGATTCGATAACCAACGGCCCTGTTGCGCAGAGCGTCAAGGACCACTCTGCAAAAGCCTCGTCCGAG
CTGTCCAGCTTGGCAGCCTCTCGCAAGACCCCTGCCAACCCTGCCGCTACCGGTCAGCCCCTAACACACTACCAC
TCCTTCTTCTCGGAGCTGCTGTCGTGGAAGAACCCTCGTGCCAGCGCCATTGCCTACGTTACCATTGTGTCCTTC
ATTTTCGCCGCTAGATACCTCGATGTGATTCGTTGGGCGTTCAAGCTGTCGTGGATGGCCCTGGCCGTCACCGTC
AGTTCCGAGGTTGCCGGCAAACTCGTCCTGAACCACGGCCTCGCCACCCAGATGAGGCCTCGCAGATACTACACT
GTCTCGCGAGCGGCCATCGACAACATGATCGGCGACGTCCATGAGCTCATCAACTTTTTCGTCATCGAGGCCCAG
CGCATCCTCTTCGCCGAGAATGTCGGCGCCTCAGCCGCGGCTTGTTTCGCCACCTTCATCGCCTACTATCTCCTC
AAGCTCGTACCGTACTGGGGTCTTGCCGTCATCGCCACGACGATTGCTTTTGCCGCTCCTCTTATCTACGTCAAC
AACCAGGAGCTCATTGATCACCACCTCAAGAATGCGTCGGACATGATTGGTGCTCAGACGGCTCAGGTTCGGGAC
GTGGCCCAGAAGCAGGCCGGTCAGCTCGCCCACATGGGCAAGCAGTACGCCGACGACTACTCGGGCAAGGTTCAG
GAGATGATTCGTGGTCGCGGAGCTACTCCCACCGCCGCGACGAAGCCGGCACCCGCTTCCAAGGATGTCGACTTC
CCTACCCCGCCGACCGAGGAGCCTCTCCAGGCTGCCCATTCCGAGGATAAGGTCCCGGAAGCCCCCGTCGTGCCG
GAGGAGGAGCCCTTGATCGCCTCCTAG
Gene >Ophio5|3003
ATGTCTGACCTTCATGATGCGCCCGCCGCGGCCAACGGCGGTGGACCGCTCGAGGCTGCCAGGACTCGTACGGTA
TGTTATTTTTTTTTTCTTCCCTAGCTATCTTCAGCTCGTCACACCTCGGGAACTGACCCAAGCCAAACGCTGACG
TATCTTTAGTTATTACCCTCTTCCTCTTCGGACGAAATGTCGAGAAGCTTACATTCTACCATTCTTGCAGAGTCC
GCTGCAGCATACGATTCGATAACCAACGGTGAGCTCCCCCTCGGATTTTGTCGCCACTCGACATGACTGACGTAA
CCTTCAGGCCCTGTTGCGCAGAGCGTCAAGGACCACTCTGCAAAAGCCTCGTCCGAGCTGTCCAGCTTGGCAGCC
TCTCGCAAGACCCCTGCCAACCCTGCCGCTACCGGTCAGCCCCTAACACACTACCACTCCTTCTTCTCGGAGCTG
CTGTCGTGGAAGAACCCTCGTATTTAAAGCCCCCTCTTGCCCCCCTCCCCCCCGACCTTGATGGACATTATTGAC
CTTTTCCAGGTGCCAGCGCCATTGCCTACGTTACCATTGTGTCCTTCATTTTCGCCGCTAGATACCTCGATGTGA
TTCGTTGGGCGTTCAAGCTGTCGTGGATGGCCCTGGCCGTCACCGTCAGTTCCGAGGTTGCCGGCAAACTCGTCC
TGAACCACGGCCTCGCCACCCAGATGAGGCCTCGCAGATACTACACTGTCTCGCGAGCGGCCATCGACAACATGA
TCGGCGACGTCCATGAGCTCATCAACTTTTTCGTCATCGAGGCCCAGCGCATCCTCTTCGCCGAGAATGTCGGCG
CCTCAGCCGCGGTAGGTGGCCTGGTTTGCAGTCGATGGGGCGTCTTGTGGCTGACGGTTGACAGGCTTGTTTCGC
CACCTTCATCGCCTACTATCTCCTCAAGCTCGTACCGTACTGGGGTCTTGCCGTCATCGCCACGACGATTGCTTT
TGCCGCTCCTCTTATCTACGTCAACAACCAGGAGCTCATTGATCACCACCTCAAGAATGCGTCGGACATGATTGG
TGCTCAGACGGCTCAGGTTCGGGACGTGGCCCAGAAGCAGGCCGGTCAGCTCGCCCACATGGGCAAGCAGTACGC
CGACGACTACTCGGGCAAGGTTCAGGAGATGATTCGTGGTCGCGGAGCTACTCCCACCGCCGCGACGAAGCCGGC
ACCCGCTTCCAAGGATGTCGACTTCCCTACCCCGCCGACCGAGGAGCCTCTCCAGGCTGCCCATTCCGAGGATAA
GGTCCCGGAAGCCCCCGTCGTGCCGGAGGAGGAGCCCTTGATCGCCTCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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