© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|297 |
| Gene name | |
| Location | scaffold_1062:344..2889 |
| Strand | - |
| Gene length (bp) | 2545 |
| Transcript length (bp) | 2445 |
| Coding sequence length (bp) | 2442 |
| Protein length (aa) | 814 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11204 | DUF2985 | Protein of unknown function (DUF2985) | 4.5E-21 | 455 | 528 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1063 | 0.227 | 0.0511 | 0.3676 | 0.1311 | 0.0091 | 0.5176 | 0.2604 | 0.3935 | 0.0108 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 465 | 487 | 22 |
| 2 | 494 | 516 | 22 |
| 3 | 521 | 540 | 19 |
| 4 | 699 | 721 | 22 |
| 5 | 736 | 758 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5816 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|297 MDSTSEPEPEPGGTGADTGAGGGGRRQDMVEEHARQLYRQQEQQCRERLQRGQQFDQQTLPSSPGLSVVSEATRR PRSPAEERLTVLSSSLPSIAQQEQQQQQMILPQQKQQQQQQQQQQNLPPSSSEATAAATAPTPSPSRPTPGPRQP SIRIRSHTLGSGRVRIHTGPDGTHQPVITAVAAPSSTRPRSGSQTSILTTPLDASRASRRQPAPLQQPAPAAHLP RLTEEGLRPSIVDLGLAPPSSAKAVDERESAFVEDGPRRSRRMTRFLWPAAASRRSQAGSSPTRDDAAPLRSREE DEYDEQLVDWLDIIDPEVQTLSTLTNVQNSLFVPDLGNWVNRRPTYVLSHHDGQPRRPVSAGARTATTTATAPAP VPAPALPPPTRDGESTSSPPIRRSATITSRLSDSHYAALPHGKSLEGWSAADKWELDDHVRHMLHSRRARFKRTM KGFGQYVRRPLGFFVTVYATLITLFGLAWVLFLIGWIYVGEKQVYAIHIIDSVLVALFAVMGDGLAPFRAIDTYH MIFVVHYMRIIKAASRPPRTRLRKRRPWNFGRRETDPEAGNAQPQSSVVPPPPSSSSSSAPVNVVPPSTPPLPLS PSSRPHTPVAAAGDDEADAAVADMVVVVDVEDGKSEHVPNDASSEAEAEGEEADDEEDDAAAYYPLTAKQRRSLL HHQHKLSKSHSFYKPQETLTHYSFPLAYLIAIVILLDCHSCLQISLGACTWGIDYHVRPFALTTVILCVSISCNL SAGIVIMVGDRRTRKKDVIRLLNRQELTGDAIKTIEHRRQKRDHRRREELLDRIADAAPDADGR |
| Coding | >Ophio5|297 ATGGATTCGACGTCAGAGCCTGAACCTGAGCCTGGTGGTACTGGTGCTGATACTGGTGCTGGTGGTGGTGGGCGA CGACAGGACATGGTGGAGGAGCATGCGAGACAGCTTTACCGACAGCAGGAGCAACAATGTCGAGAGAGGCTTCAG CGGGGACAGCAATTCGATCAACAGACGCTGCCTTCTAGTCCGGGCCTGTCAGTCGTGAGCGAGGCCACGCGTCGT CCTCGGTCGCCGGCTGAGGAGCGTCTGACTGTGCTTTCTTCGTCGCTTCCTTCGATTGCGCAGCAGGAACAACAA CAACAACAGATGATACTACCACAGCAAAAACAACAACAACAACAACAACAACAACAACAAAATCTCCCTCCCTCG TCGTCCGAAGCCACAGCCGCAGCCACGGCGCCGACCCCTTCTCCCTCCCGACCGACGCCAGGCCCCCGTCAGCCC AGCATTCGCATCCGCTCCCACACGCTCGGCTCCGGCCGCGTCCGCATTCACACGGGGCCGGACGGCACCCATCAG CCCGTCATCACCGCCGTCGCCGCTCCGTCCTCGACCCGTCCGCGCAGTGGTTCCCAGACGAGCATCTTGACGACG CCCCTGGATGCCTCCCGCGCCTCGAGGAGGCAGCCGGCTCCGCTTCAGCAGCCGGCGCCCGCTGCTCATCTGCCG CGTCTGACCGAAGAGGGCCTGCGCCCTTCCATCGTCGACCTCGGACTCGCGCCCCCCTCGTCGGCCAAGGCTGTC GATGAGCGCGAGTCGGCCTTTGTCGAGGATGGGCCCCGTCGGTCGCGGCGTATGACTCGCTTCCTTTGGCCCGCC GCCGCTTCGAGGAGGAGTCAGGCTGGTTCGTCGCCCACGCGGGATGATGCCGCTCCTCTCCGGTCGCGTGAAGAG GACGAGTATGACGAGCAGTTGGTCGACTGGCTGGATATCATCGATCCCGAGGTCCAGACGCTATCGACGCTCACC AACGTGCAAAACTCGCTCTTCGTCCCCGACCTCGGCAACTGGGTCAACCGCCGGCCCACCTACGTGCTCTCCCAT CACGACGGCCAGCCCCGGAGGCCCGTATCGGCCGGCGCCCGGACCGCCACGACGACGGCGACGGCCCCGGCCCCG GTTCCGGCTCCGGCGTTGCCCCCCCCGACCCGAGATGGCGAAAGCACATCGTCGCCGCCCATACGCCGCTCGGCC ACCATCACCTCCCGCCTCTCCGACTCGCACTACGCCGCGCTGCCGCACGGAAAGTCGCTCGAGGGCTGGAGCGCG GCCGACAAGTGGGAGCTCGACGACCACGTGCGGCACATGCTGCACTCGAGACGCGCCCGCTTCAAGCGCACCATG AAGGGTTTCGGCCAATACGTGCGTCGGCCGTTGGGCTTCTTCGTCACCGTCTACGCTACGCTCATCACCCTCTTC GGCCTTGCCTGGGTCTTGTTCCTGATCGGATGGATCTACGTCGGTGAGAAGCAGGTGTACGCCATTCACATCATC GACAGCGTCCTCGTCGCCCTCTTCGCCGTCATGGGCGATGGCCTGGCGCCCTTTCGCGCCATTGACACGTACCAC ATGATCTTTGTCGTCCACTACATGCGCATCATCAAGGCCGCCTCGCGTCCGCCTCGGACCCGACTCCGCAAGCGC CGGCCTTGGAACTTTGGCCGTCGCGAGACCGACCCGGAAGCCGGCAACGCACAGCCGCAATCGTCGGTCGTCCCG CCGCCGCCCTCTTCGTCGTCGTCTTCGGCTCCCGTCAACGTCGTACCCCCTTCGACTCCTCCTCTCCCCCTCAGC CCGTCCTCCCGTCCTCACACTCCAGTGGCGGCGGCAGGCGACGACGAAGCCGACGCCGCCGTCGCCGACATGGTC GTCGTCGTCGATGTCGAAGACGGAAAATCGGAACATGTCCCCAACGACGCATCATCCGAGGCCGAAGCCGAAGGC GAAGAGGCCGACGACGAAGAAGACGACGCCGCCGCCTACTACCCCCTGACGGCCAAGCAACGTCGCAGCCTCCTG CACCACCAGCACAAGCTCAGCAAGTCGCACAGCTTCTACAAACCCCAGGAGACGCTGACGCACTACTCCTTCCCG CTCGCCTACCTCATCGCCATCGTCATCCTTCTCGACTGCCACTCGTGCCTGCAAATCTCGCTGGGCGCATGCACG TGGGGCATCGACTATCACGTCCGGCCTTTTGCCCTCACCACCGTCATCCTCTGCGTCAGCATCTCGTGCAACCTC TCGGCCGGCATCGTCATCATGGTGGGCGATCGTCGGACGAGGAAGAAGGACGTCATTCGTCTCCTCAATCGTCAG GAGCTTACCGGTGATGCCATCAAGACGATTGAGCATAGGAGGCAGAAGAGGGATCATCGGAGGAGGGAGGAGCTG CTGGATCGCATTGCTGACGCGGCGCCTGATGCTGATGGTCGG |
| Transcript | >Ophio5|297 ATGGATTCGACGTCAGAGCCTGAACCTGAGCCTGGTGGTACTGGTGCTGATACTGGTGCTGGTGGTGGTGGGCGA CGACAGGACATGGTGGAGGAGCATGCGAGACAGCTTTACCGACAGCAGGAGCAACAATGTCGAGAGAGGCTTCAG CGGGGACAGCAATTCGATCAACAGACGCTGCCTTCTAGTCCGGGCCTGTCAGTCGTGAGCGAGGCCACGCGTCGT CCTCGGTCGCCGGCTGAGGAGCGTCTGACTGTGCTTTCTTCGTCGCTTCCTTCGATTGCGCAGCAGGAACAACAA CAACAACAGATGATACTACCACAGCAAAAACAACAACAACAACAACAACAACAACAACAAAATCTCCCTCCCTCG TCGTCCGAAGCCACAGCCGCAGCCACGGCGCCGACCCCTTCTCCCTCCCGACCGACGCCAGGCCCCCGTCAGCCC AGCATTCGCATCCGCTCCCACACGCTCGGCTCCGGCCGCGTCCGCATTCACACGGGGCCGGACGGCACCCATCAG CCCGTCATCACCGCCGTCGCCGCTCCGTCCTCGACCCGTCCGCGCAGTGGTTCCCAGACGAGCATCTTGACGACG CCCCTGGATGCCTCCCGCGCCTCGAGGAGGCAGCCGGCTCCGCTTCAGCAGCCGGCGCCCGCTGCTCATCTGCCG CGTCTGACCGAAGAGGGCCTGCGCCCTTCCATCGTCGACCTCGGACTCGCGCCCCCCTCGTCGGCCAAGGCTGTC GATGAGCGCGAGTCGGCCTTTGTCGAGGATGGGCCCCGTCGGTCGCGGCGTATGACTCGCTTCCTTTGGCCCGCC GCCGCTTCGAGGAGGAGTCAGGCTGGTTCGTCGCCCACGCGGGATGATGCCGCTCCTCTCCGGTCGCGTGAAGAG GACGAGTATGACGAGCAGTTGGTCGACTGGCTGGATATCATCGATCCCGAGGTCCAGACGCTATCGACGCTCACC AACGTGCAAAACTCGCTCTTCGTCCCCGACCTCGGCAACTGGGTCAACCGCCGGCCCACCTACGTGCTCTCCCAT CACGACGGCCAGCCCCGGAGGCCCGTATCGGCCGGCGCCCGGACCGCCACGACGACGGCGACGGCCCCGGCCCCG GTTCCGGCTCCGGCGTTGCCCCCCCCGACCCGAGATGGCGAAAGCACATCGTCGCCGCCCATACGCCGCTCGGCC ACCATCACCTCCCGCCTCTCCGACTCGCACTACGCCGCGCTGCCGCACGGAAAGTCGCTCGAGGGCTGGAGCGCG GCCGACAAGTGGGAGCTCGACGACCACGTGCGGCACATGCTGCACTCGAGACGCGCCCGCTTCAAGCGCACCATG AAGGGTTTCGGCCAATACGTGCGTCGGCCGTTGGGCTTCTTCGTCACCGTCTACGCTACGCTCATCACCCTCTTC GGCCTTGCCTGGGTCTTGTTCCTGATCGGATGGATCTACGTCGGTGAGAAGCAGGTGTACGCCATTCACATCATC GACAGCGTCCTCGTCGCCCTCTTCGCCGTCATGGGCGATGGCCTGGCGCCCTTTCGCGCCATTGACACGTACCAC ATGATCTTTGTCGTCCACTACATGCGCATCATCAAGGCCGCCTCGCGTCCGCCTCGGACCCGACTCCGCAAGCGC CGGCCTTGGAACTTTGGCCGTCGCGAGACCGACCCGGAAGCCGGCAACGCACAGCCGCAATCGTCGGTCGTCCCG CCGCCGCCCTCTTCGTCGTCGTCTTCGGCTCCCGTCAACGTCGTACCCCCTTCGACTCCTCCTCTCCCCCTCAGC CCGTCCTCCCGTCCTCACACTCCAGTGGCGGCGGCAGGCGACGACGAAGCCGACGCCGCCGTCGCCGACATGGTC GTCGTCGTCGATGTCGAAGACGGAAAATCGGAACATGTCCCCAACGACGCATCATCCGAGGCCGAAGCCGAAGGC GAAGAGGCCGACGACGAAGAAGACGACGCCGCCGCCTACTACCCCCTGACGGCCAAGCAACGTCGCAGCCTCCTG CACCACCAGCACAAGCTCAGCAAGTCGCACAGCTTCTACAAACCCCAGGAGACGCTGACGCACTACTCCTTCCCG CTCGCCTACCTCATCGCCATCGTCATCCTTCTCGACTGCCACTCGTGCCTGCAAATCTCGCTGGGCGCATGCACG TGGGGCATCGACTATCACGTCCGGCCTTTTGCCCTCACCACCGTCATCCTCTGCGTCAGCATCTCGTGCAACCTC TCGGCCGGCATCGTCATCATGGTGGGCGATCGTCGGACGAGGAAGAAGGACGTCATTCGTCTCCTCAATCGTCAG GAGCTTACCGGTGATGCCATCAAGACGATTGAGCATAGGAGGCAGAAGAGGGATCATCGGAGGAGGGAGGAGCTG CTGGATCGCATTGCTGACGCGGCGCCTGATGCTGATGGTCGGTGA |
| Gene | >Ophio5|297 ATGGATTCGACGTCAGAGCCTGAACCTGAGCCTGGTGGTACTGGTGCTGATACTGGTGCTGGTGGTGGTGGGCGA CGACAGGACATGGTGGAGGAGCATGCGAGACAGCTTTACCGACAGCAGGAGCAACAATGTCGAGAGAGGCTTCAG CGGGGACAGCAATTCGATCAACAGACGCTGCCTTCTAGTCCGGGCCTGTCAGTCGTGAGCGAGGCCACGCGTCGT CCTCGGTCGCCGGCTGAGGAGCGTCTGACTGTGCTTTCTTCGTCGCTTCCTTCGATTGCGCAGCAGGAACAACAA CAACAACAGATGATACTACCACAGCAAAAACAACAACAACAACAACAACAACAACAACAAAATCTCCCTCCCTCG TCGTCCGAAGCCACAGCCGCAGCCACGGCGCCGACCCCTTCTCCCTCCCGACCGACGCCAGGCCCCCGTCAGCCC AGCATTCGCATCCGCTCCCACACGCTCGGCTCCGGCCGCGTCCGCATTCACACGGGGCCGGACGGCACCCATCAG CCCGTCATCACCGCCGTCGCCGCTCCGTCCTCGACCCGTCCGCGCAGTGGTTCCCAGACGAGCATCTTGACGACG CCCCTGGATGCCTCCCGCGCCTCGAGGAGGCAGCCGGCTCCGCTTCAGCAGCCGGCGCCCGCTGCTCATCTGCCG CGTCTGACCGAAGAGGGCCTGCGCCCTTCCATCGTCGACCTCGGACTCGCGCCCCCCTCGTCGGCCAAGGCTGTC GATGAGCGCGAGTCGGCCTTTGTCGAGGATGGGCCCCGTCGGTCGCGGCGTATGACTCGCTTCCTTTGGCCCGCC GCCGCTTCGAGGAGGAGTCAGGCTGGTTCGTCGCCCACGCGGGATGATGCCGCTCCTCTCCGGTCGCGTGAAGAG GACGAGTATGACGAGCAGTTGGTCGACTGGCTGGATATCATCGGTGAGTTTGTTACTCCCTGTCTTCTCCCTTCC CTTTCCCTTTTCTTCTTTGTCTTGCCAGCCATTGTAGTCGTCGTCGTCGTCGGCTGACTCGCGTCAAGATCCCGA GGTCCAGACGCTATCGACGCTCACCAACGTGCAAAACTCGCTCTTCGTCCCCGACCTCGGCAACTGGGTCAACCG CCGGCCCACCTACGTGCTCTCCCATCACGACGGCCAGCCCCGGAGGCCCGTATCGGCCGGCGCCCGGACCGCCAC GACGACGGCGACGGCCCCGGCCCCGGTTCCGGCTCCGGCGTTGCCCCCCCCGACCCGAGATGGCGAAAGCACATC GTCGCCGCCCATACGCCGCTCGGCCACCATCACCTCCCGCCTCTCCGACTCGCACTACGCCGCGCTGCCGCACGG AAAGTCGCTCGAGGGCTGGAGCGCGGCCGACAAGTGGGAGCTCGACGACCACGTGCGGCACATGCTGCACTCGAG ACGCGCCCGCTTCAAGCGCACCATGAAGGGTTTCGGCCAATACGTGCGTCGGCCGTTGGGCTTCTTCGTCACCGT CTACGCTACGCTCATCACCCTCTTCGGCCTTGCCTGGGTCTTGTTCCTGATCGGATGGATCTACGTCGGTGAGAA GCAGGTGTACGCCATTCACATCATCGACAGCGTCCTCGTCGCCCTCTTCGCCGTCATGGGCGATGGCCTGGCGCC CTTTCGCGCCATTGACACGTACCACATGATCTTTGTCGTCCACTACATGCGCATCATCAAGGCCGCCTCGCGTCC GCCTCGGACCCGACTCCGCAAGCGCCGGCCTTGGAACTTTGGCCGTCGCGAGACCGACCCGGAAGCCGGCAACGC ACAGCCGCAATCGTCGGTCGTCCCGCCGCCGCCCTCTTCGTCGTCGTCTTCGGCTCCCGTCAACGTCGTACCCCC TTCGACTCCTCCTCTCCCCCTCAGCCCGTCCTCCCGTCCTCACACTCCAGTGGCGGCGGCAGGCGACGACGAAGC CGACGCCGCCGTCGCCGACATGGTCGTCGTCGTCGATGTCGAAGACGGAAAATCGGAACATGTCCCCAACGACGC ATCATCCGAGGCCGAAGCCGAAGGCGAAGAGGCCGACGACGAAGAAGACGACGCCGCCGCCTACTACCCCCTGAC GGCCAAGCAACGTCGCAGCCTCCTGCACCACCAGCACAAGCTCAGCAAGTCGCACAGCTTCTACAAACCCCAGGA GACGCTGACGCACTACTCCTTCCCGCTCGCCTACCTCATCGCCATCGTCATCCTTCTCGACTGCCACTCGTGCCT GCAAATCTCGCTGGGCGCATGCACGTGGGGCATCGACTATCACGTCCGGCCTTTTGCCCTCACCACCGTCATCCT CTGCGTCAGCATCTCGTGCAACCTCTCGGCCGGCATCGTCATCATGGTGGGCGATCGTCGGACGAGGAAGAAGGA CGTCATTCGTCTCCTCAATCGTCAGGAGCTTACCGGTGATGCCATCAAGACGATTGAGCATAGGAGGCAGAAGAG GGATCATCGGAGGAGGGAGGAGCTGCTGGATCGCATTGCTGACGCGGCGCCTGATGCTGATGGTCGGTGA |