Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|294
Gene name
Locationscaffold_106:42809..43484
Strand-
Gene length (bp)675
Transcript length (bp)675
Coding sequence length (bp)672
Protein length (aa) 224

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 6.55 1.36 11.74
CcL In ants, during behavior modification 3.29 0.18 6.39
CcD In ants, recently dead 2.62 0.00 5.34

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.116021 no
SC16a CcD 0.057066 no
CcL CcD 0.690383 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|294
MKTVATLAAALVGFVSVSQAHMEMMSPAPLRSGYNRFTEDQDWDMRSPLESSGGDYPCKGSLKLLGTPQAGVVAE
WTAGQEHNVTITGNTPHSGGSCQVSLSTDQGNSWKVLRSYIGNCPVMGESSYAFQLPSDAPTGQVLVGWTWFNNV
GNREMYMNCAVVNIKAGQYSTAGESYAKRPAMFVANVGNGCGTEEGFDLEFPHMGPDPELNSRRTHPPVGNCAY
Coding >Ophio5|294
ATGAAGACGGTCGCAACTCTCGCCGCCGCCCTAGTCGGGTTTGTCTCCGTGTCGCAGGCCCACATGGAGATGATG
AGCCCGGCACCTCTGCGGTCGGGATACAACCGCTTCACGGAAGACCAGGACTGGGACATGAGGTCGCCCCTCGAG
TCGAGCGGGGGAGACTATCCGTGCAAGGGCTCGCTCAAGCTTCTGGGCACGCCGCAGGCCGGGGTGGTGGCCGAG
TGGACGGCCGGACAGGAGCACAACGTGACCATCACGGGCAACACGCCACACAGCGGAGGCTCATGCCAGGTATCG
CTGTCGACGGACCAGGGCAACTCGTGGAAGGTGCTGCGGTCGTACATTGGGAACTGCCCCGTCATGGGCGAGTCG
AGCTACGCGTTCCAGCTGCCGTCGGACGCGCCCACGGGCCAGGTGCTGGTGGGATGGACGTGGTTCAACAATGTG
GGCAACCGCGAGATGTACATGAACTGCGCCGTCGTCAACATCAAGGCGGGTCAGTACTCTACGGCAGGAGAATCG
TATGCCAAGCGTCCTGCCATGTTCGTCGCCAACGTCGGAAACGGTTGCGGAACCGAGGAGGGCTTCGACCTCGAG
TTCCCCCATATGGGACCGGATCCGGAACTCAACTCGCGCCGGACGCACCCGCCCGTCGGCAACTGCGCTTAT
Transcript >Ophio5|294
ATGAAGACGGTCGCAACTCTCGCCGCCGCCCTAGTCGGGTTTGTCTCCGTGTCGCAGGCCCACATGGAGATGATG
AGCCCGGCACCTCTGCGGTCGGGATACAACCGCTTCACGGAAGACCAGGACTGGGACATGAGGTCGCCCCTCGAG
TCGAGCGGGGGAGACTATCCGTGCAAGGGCTCGCTCAAGCTTCTGGGCACGCCGCAGGCCGGGGTGGTGGCCGAG
TGGACGGCCGGACAGGAGCACAACGTGACCATCACGGGCAACACGCCACACAGCGGAGGCTCATGCCAGGTATCG
CTGTCGACGGACCAGGGCAACTCGTGGAAGGTGCTGCGGTCGTACATTGGGAACTGCCCCGTCATGGGCGAGTCG
AGCTACGCGTTCCAGCTGCCGTCGGACGCGCCCACGGGCCAGGTGCTGGTGGGATGGACGTGGTTCAACAATGTG
GGCAACCGCGAGATGTACATGAACTGCGCCGTCGTCAACATCAAGGCGGGTCAGTACTCTACGGCAGGAGAATCG
TATGCCAAGCGTCCTGCCATGTTCGTCGCCAACGTCGGAAACGGTTGCGGAACCGAGGAGGGCTTCGACCTCGAG
TTCCCCCATATGGGACCGGATCCGGAACTCAACTCGCGCCGGACGCACCCGCCCGTCGGCAACTGCGCTTATTGA
Gene >Ophio5|294
ATGAAGACGGTCGCAACTCTCGCCGCCGCCCTAGTCGGGTTTGTCTCCGTGTCGCAGGCCCACATGGAGATGATG
AGCCCGGCACCTCTGCGGTCGGGATACAACCGCTTCACGGAAGACCAGGACTGGGACATGAGGTCGCCCCTCGAG
TCGAGCGGGGGAGACTATCCGTGCAAGGGCTCGCTCAAGCTTCTGGGCACGCCGCAGGCCGGGGTGGTGGCCGAG
TGGACGGCCGGACAGGAGCACAACGTGACCATCACGGGCAACACGCCACACAGCGGAGGCTCATGCCAGGTATCG
CTGTCGACGGACCAGGGCAACTCGTGGAAGGTGCTGCGGTCGTACATTGGGAACTGCCCCGTCATGGGCGAGTCG
AGCTACGCGTTCCAGCTGCCGTCGGACGCGCCCACGGGCCAGGTGCTGGTGGGATGGACGTGGTTCAACAATGTG
GGCAACCGCGAGATGTACATGAACTGCGCCGTCGTCAACATCAAGGCGGGTCAGTACTCTACGGCAGGAGAATCG
TATGCCAAGCGTCCTGCCATGTTCGTCGCCAACGTCGGAAACGGTTGCGGAACCGAGGAGGGCTTCGACCTCGAG
TTCCCCCATATGGGACCGGATCCGGAACTCAACTCGCGCCGGACGCACCCGCCCGTCGGCAACTGCGCTTATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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