Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|294
Gene name
Location	scaffold_106:42809..43484
Strand	-
Gene length (bp)	675
Transcript length (bp)	675
Coding sequence length (bp)	672
Protein length (aa)	224

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	6.55	1.36	11.74
CcL	In ants, during behavior modification	3.29	0.18	6.39
CcD	In ants, recently dead	2.62	0.00	5.34

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.116021	no
SC16a	CcD	0.057066	no
CcL	CcD	0.690383	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|294 MKTVATLAAALVGFVSVSQAHMEMMSPAPLRSGYNRFTEDQDWDMRSPLESSGGDYPCKGSLKLLGTPQAGVVAE WTAGQEHNVTITGNTPHSGGSCQVSLSTDQGNSWKVLRSYIGNCPVMGESSYAFQLPSDAPTGQVLVGWTWFNNV GNREMYMNCAVVNIKAGQYSTAGESYAKRPAMFVANVGNGCGTEEGFDLEFPHMGPDPELNSRRTHPPVGNCAY
Coding	>Ophio5\|294 ATGAAGACGGTCGCAACTCTCGCCGCCGCCCTAGTCGGGTTTGTCTCCGTGTCGCAGGCCCACATGGAGATGATG AGCCCGGCACCTCTGCGGTCGGGATACAACCGCTTCACGGAAGACCAGGACTGGGACATGAGGTCGCCCCTCGAG TCGAGCGGGGGAGACTATCCGTGCAAGGGCTCGCTCAAGCTTCTGGGCACGCCGCAGGCCGGGGTGGTGGCCGAG TGGACGGCCGGACAGGAGCACAACGTGACCATCACGGGCAACACGCCACACAGCGGAGGCTCATGCCAGGTATCG CTGTCGACGGACCAGGGCAACTCGTGGAAGGTGCTGCGGTCGTACATTGGGAACTGCCCCGTCATGGGCGAGTCG AGCTACGCGTTCCAGCTGCCGTCGGACGCGCCCACGGGCCAGGTGCTGGTGGGATGGACGTGGTTCAACAATGTG GGCAACCGCGAGATGTACATGAACTGCGCCGTCGTCAACATCAAGGCGGGTCAGTACTCTACGGCAGGAGAATCG TATGCCAAGCGTCCTGCCATGTTCGTCGCCAACGTCGGAAACGGTTGCGGAACCGAGGAGGGCTTCGACCTCGAG TTCCCCCATATGGGACCGGATCCGGAACTCAACTCGCGCCGGACGCACCCGCCCGTCGGCAACTGCGCTTAT
Transcript	>Ophio5\|294 ATGAAGACGGTCGCAACTCTCGCCGCCGCCCTAGTCGGGTTTGTCTCCGTGTCGCAGGCCCACATGGAGATGATG AGCCCGGCACCTCTGCGGTCGGGATACAACCGCTTCACGGAAGACCAGGACTGGGACATGAGGTCGCCCCTCGAG TCGAGCGGGGGAGACTATCCGTGCAAGGGCTCGCTCAAGCTTCTGGGCACGCCGCAGGCCGGGGTGGTGGCCGAG TGGACGGCCGGACAGGAGCACAACGTGACCATCACGGGCAACACGCCACACAGCGGAGGCTCATGCCAGGTATCG CTGTCGACGGACCAGGGCAACTCGTGGAAGGTGCTGCGGTCGTACATTGGGAACTGCCCCGTCATGGGCGAGTCG AGCTACGCGTTCCAGCTGCCGTCGGACGCGCCCACGGGCCAGGTGCTGGTGGGATGGACGTGGTTCAACAATGTG GGCAACCGCGAGATGTACATGAACTGCGCCGTCGTCAACATCAAGGCGGGTCAGTACTCTACGGCAGGAGAATCG TATGCCAAGCGTCCTGCCATGTTCGTCGCCAACGTCGGAAACGGTTGCGGAACCGAGGAGGGCTTCGACCTCGAG TTCCCCCATATGGGACCGGATCCGGAACTCAACTCGCGCCGGACGCACCCGCCCGTCGGCAACTGCGCTTATTGA
Gene	>Ophio5\|294 ATGAAGACGGTCGCAACTCTCGCCGCCGCCCTAGTCGGGTTTGTCTCCGTGTCGCAGGCCCACATGGAGATGATG AGCCCGGCACCTCTGCGGTCGGGATACAACCGCTTCACGGAAGACCAGGACTGGGACATGAGGTCGCCCCTCGAG TCGAGCGGGGGAGACTATCCGTGCAAGGGCTCGCTCAAGCTTCTGGGCACGCCGCAGGCCGGGGTGGTGGCCGAG TGGACGGCCGGACAGGAGCACAACGTGACCATCACGGGCAACACGCCACACAGCGGAGGCTCATGCCAGGTATCG CTGTCGACGGACCAGGGCAACTCGTGGAAGGTGCTGCGGTCGTACATTGGGAACTGCCCCGTCATGGGCGAGTCG AGCTACGCGTTCCAGCTGCCGTCGGACGCGCCCACGGGCCAGGTGCTGGTGGGATGGACGTGGTTCAACAATGTG GGCAACCGCGAGATGTACATGAACTGCGCCGTCGTCAACATCAAGGCGGGTCAGTACTCTACGGCAGGAGAATCG TATGCCAAGCGTCCTGCCATGTTCGTCGCCAACGTCGGAAACGGTTGCGGAACCGAGGAGGGCTTCGACCTCGAG TTCCCCCATATGGGACCGGATCCGGAACTCAACTCGCGCCGGACGCACCCGCCCGTCGGCAACTGCGCTTATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail