Protein ID | Ophio5|294 |
Gene name | |
Location | scaffold_106:42809..43484 |
Strand | - |
Gene length (bp) | 675 |
Transcript length (bp) | 675 |
Coding sequence length (bp) | 672 |
Protein length (aa) | 224 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.0917 | 0.069 | 0.9098 | 0.0792 | 0.074 | 0.0092 | 0.0575 | 0.116 | 0.0745 | 0.0011 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 20 | 0.999794 |
CAZyme category | E-value | Start | End |
---|---|---|---|
AA11 | 2.9E-60 | 21 | 211 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 6.55 | 1.36 | 11.74 |
CcL | In ants, during behavior modification | 3.29 | 0.18 | 6.39 |
CcD | In ants, recently dead | 2.62 | 0.00 | 5.34 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.116021 | no |
SC16a | CcD | 0.057066 | no |
CcL | CcD | 0.690383 | no |
Orthofinder run ID | 4 |
Orthogroup | 2634 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|294 MKTVATLAAALVGFVSVSQAHMEMMSPAPLRSGYNRFTEDQDWDMRSPLESSGGDYPCKGSLKLLGTPQAGVVAE WTAGQEHNVTITGNTPHSGGSCQVSLSTDQGNSWKVLRSYIGNCPVMGESSYAFQLPSDAPTGQVLVGWTWFNNV GNREMYMNCAVVNIKAGQYSTAGESYAKRPAMFVANVGNGCGTEEGFDLEFPHMGPDPELNSRRTHPPVGNCAY |
Coding | >Ophio5|294 ATGAAGACGGTCGCAACTCTCGCCGCCGCCCTAGTCGGGTTTGTCTCCGTGTCGCAGGCCCACATGGAGATGATG AGCCCGGCACCTCTGCGGTCGGGATACAACCGCTTCACGGAAGACCAGGACTGGGACATGAGGTCGCCCCTCGAG TCGAGCGGGGGAGACTATCCGTGCAAGGGCTCGCTCAAGCTTCTGGGCACGCCGCAGGCCGGGGTGGTGGCCGAG TGGACGGCCGGACAGGAGCACAACGTGACCATCACGGGCAACACGCCACACAGCGGAGGCTCATGCCAGGTATCG CTGTCGACGGACCAGGGCAACTCGTGGAAGGTGCTGCGGTCGTACATTGGGAACTGCCCCGTCATGGGCGAGTCG AGCTACGCGTTCCAGCTGCCGTCGGACGCGCCCACGGGCCAGGTGCTGGTGGGATGGACGTGGTTCAACAATGTG GGCAACCGCGAGATGTACATGAACTGCGCCGTCGTCAACATCAAGGCGGGTCAGTACTCTACGGCAGGAGAATCG TATGCCAAGCGTCCTGCCATGTTCGTCGCCAACGTCGGAAACGGTTGCGGAACCGAGGAGGGCTTCGACCTCGAG TTCCCCCATATGGGACCGGATCCGGAACTCAACTCGCGCCGGACGCACCCGCCCGTCGGCAACTGCGCTTAT |
Transcript | >Ophio5|294 ATGAAGACGGTCGCAACTCTCGCCGCCGCCCTAGTCGGGTTTGTCTCCGTGTCGCAGGCCCACATGGAGATGATG AGCCCGGCACCTCTGCGGTCGGGATACAACCGCTTCACGGAAGACCAGGACTGGGACATGAGGTCGCCCCTCGAG TCGAGCGGGGGAGACTATCCGTGCAAGGGCTCGCTCAAGCTTCTGGGCACGCCGCAGGCCGGGGTGGTGGCCGAG TGGACGGCCGGACAGGAGCACAACGTGACCATCACGGGCAACACGCCACACAGCGGAGGCTCATGCCAGGTATCG CTGTCGACGGACCAGGGCAACTCGTGGAAGGTGCTGCGGTCGTACATTGGGAACTGCCCCGTCATGGGCGAGTCG AGCTACGCGTTCCAGCTGCCGTCGGACGCGCCCACGGGCCAGGTGCTGGTGGGATGGACGTGGTTCAACAATGTG GGCAACCGCGAGATGTACATGAACTGCGCCGTCGTCAACATCAAGGCGGGTCAGTACTCTACGGCAGGAGAATCG TATGCCAAGCGTCCTGCCATGTTCGTCGCCAACGTCGGAAACGGTTGCGGAACCGAGGAGGGCTTCGACCTCGAG TTCCCCCATATGGGACCGGATCCGGAACTCAACTCGCGCCGGACGCACCCGCCCGTCGGCAACTGCGCTTATTGA |
Gene | >Ophio5|294 ATGAAGACGGTCGCAACTCTCGCCGCCGCCCTAGTCGGGTTTGTCTCCGTGTCGCAGGCCCACATGGAGATGATG AGCCCGGCACCTCTGCGGTCGGGATACAACCGCTTCACGGAAGACCAGGACTGGGACATGAGGTCGCCCCTCGAG TCGAGCGGGGGAGACTATCCGTGCAAGGGCTCGCTCAAGCTTCTGGGCACGCCGCAGGCCGGGGTGGTGGCCGAG TGGACGGCCGGACAGGAGCACAACGTGACCATCACGGGCAACACGCCACACAGCGGAGGCTCATGCCAGGTATCG CTGTCGACGGACCAGGGCAACTCGTGGAAGGTGCTGCGGTCGTACATTGGGAACTGCCCCGTCATGGGCGAGTCG AGCTACGCGTTCCAGCTGCCGTCGGACGCGCCCACGGGCCAGGTGCTGGTGGGATGGACGTGGTTCAACAATGTG GGCAACCGCGAGATGTACATGAACTGCGCCGTCGTCAACATCAAGGCGGGTCAGTACTCTACGGCAGGAGAATCG TATGCCAAGCGTCCTGCCATGTTCGTCGCCAACGTCGGAAACGGTTGCGGAACCGAGGAGGGCTTCGACCTCGAG TTCCCCCATATGGGACCGGATCCGGAACTCAACTCGCGCCGGACGCACCCGCCCGTCGGCAACTGCGCTTATTGA |