© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2901 |
| Gene name | |
| Location | scaffold_231:3955..4879 |
| Strand | - |
| Gene length (bp) | 924 |
| Transcript length (bp) | 873 |
| Coding sequence length (bp) | 870 |
| Protein length (aa) | 290 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06912 | DUF1275 | Protein of unknown function (DUF1275) | 7.2E-44 | 70 | 274 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 116 | 135 | 19 |
| 2 | 148 | 167 | 19 |
| 3 | 177 | 196 | 19 |
| 4 | 236 | 253 | 17 |
| 5 | 257 | 279 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 25.13 | 10.35 | 39.90 |
| CcL | In ants, during behavior modification | 25.69 | 10.55 | 40.84 |
| CcD | In ants, recently dead | 22.45 | 9.06 | 35.85 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.954182 | no |
| SC16a | CcD | 0.751155 | no |
| CcL | CcD | 0.695907 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2901 MFCHLPLRIAKHDTTAGEKNSRTPEPVPQEISSEASAGSYWPVVAVPERGRLLSHFTEDVRSSLFAEAQLVLLTF CTGIQDVTTFLDYHCFASNQTGNTVFLCIALIISKIESETFVTANIGMSLGVFLGAGWLTGQLSHAIGPRKRWWL VLSNLVQTVFVFGVAGIQYRYGNADRGPVALGVVALLAFAAGSQVVQSRSLRMTEISTAMATAAWVDLVIDPKLF VLHNRPRNRRVAFLAALAVGSLIGAVVYRQVGSAAVMAVSGAGKLLVTVLFLFSPAEMQRRTEAV |
| Coding | >Ophio5|2901 ATGTTTTGCCACTTGCCTCTTCGCATCGCGAAGCATGACACGACGGCTGGGGAAAAGAACTCGAGGACTCCCGAG CCAGTTCCTCAGGAGATCTCGTCCGAAGCGAGCGCCGGCTCCTACTGGCCCGTCGTCGCCGTACCCGAGCGGGGC AGGCTTCTGAGCCACTTCACCGAGGATGTCCGCTCCTCACTCTTTGCCGAGGCACAGCTCGTGCTCTTGACATTT TGTACCGGCATTCAAGATGTCACCACCTTTCTCGACTATCATTGCTTCGCCTCCAACCAGACCGGGAACACCGTC TTTCTCTGCATCGCTCTGATCATCTCCAAGATCGAGAGCGAGACGTTTGTGACGGCAAATATCGGCATGTCTTTG GGTGTGTTCCTGGGCGCCGGATGGTTGACGGGGCAGCTGAGCCACGCAATCGGACCTCGAAAGCGTTGGTGGCTC GTCTTAAGCAATCTGGTCCAGACCGTCTTCGTCTTCGGCGTCGCTGGAATCCAGTACCGGTACGGGAATGCCGAT CGCGGACCGGTCGCTCTCGGCGTCGTGGCCCTGCTGGCCTTTGCCGCCGGCAGCCAAGTCGTCCAGTCGCGCAGC CTGCGCATGACTGAAATCAGCACGGCCATGGCCACGGCCGCATGGGTGGACCTGGTCATCGACCCGAAGCTCTTT GTACTGCACAATCGCCCGAGGAATCGTCGTGTCGCCTTCCTCGCCGCTCTGGCCGTCGGCTCCCTCATCGGCGCC GTGGTCTACCGGCAGGTTGGTTCGGCAGCTGTCATGGCCGTGTCTGGAGCCGGCAAGCTGCTCGTCACCGTACTC TTCCTGTTTTCACCCGCTGAGATGCAACGACGGACCGAGGCAGTG |
| Transcript | >Ophio5|2901 ATGTTTTGCCACTTGCCTCTTCGCATCGCGAAGCATGACACGACGGCTGGGGAAAAGAACTCGAGGACTCCCGAG CCAGTTCCTCAGGAGATCTCGTCCGAAGCGAGCGCCGGCTCCTACTGGCCCGTCGTCGCCGTACCCGAGCGGGGC AGGCTTCTGAGCCACTTCACCGAGGATGTCCGCTCCTCACTCTTTGCCGAGGCACAGCTCGTGCTCTTGACATTT TGTACCGGCATTCAAGATGTCACCACCTTTCTCGACTATCATTGCTTCGCCTCCAACCAGACCGGGAACACCGTC TTTCTCTGCATCGCTCTGATCATCTCCAAGATCGAGAGCGAGACGTTTGTGACGGCAAATATCGGCATGTCTTTG GGTGTGTTCCTGGGCGCCGGATGGTTGACGGGGCAGCTGAGCCACGCAATCGGACCTCGAAAGCGTTGGTGGCTC GTCTTAAGCAATCTGGTCCAGACCGTCTTCGTCTTCGGCGTCGCTGGAATCCAGTACCGGTACGGGAATGCCGAT CGCGGACCGGTCGCTCTCGGCGTCGTGGCCCTGCTGGCCTTTGCCGCCGGCAGCCAAGTCGTCCAGTCGCGCAGC CTGCGCATGACTGAAATCAGCACGGCCATGGCCACGGCCGCATGGGTGGACCTGGTCATCGACCCGAAGCTCTTT GTACTGCACAATCGCCCGAGGAATCGTCGTGTCGCCTTCCTCGCCGCTCTGGCCGTCGGCTCCCTCATCGGCGCC GTGGTCTACCGGCAGGTTGGTTCGGCAGCTGTCATGGCCGTGTCTGGAGCCGGCAAGCTGCTCGTCACCGTACTC TTCCTGTTTTCACCCGCTGAGATGCAACGACGGACCGAGGCAGTGTAA |
| Gene | >Ophio5|2901 ATGTTTTGCCACTTGCCTCTTCGCATCGCGAAGCATGACACGACGGCTGGGGAAAAGAACTCGAGGACTCCCGAG CCAGTTCCTCAGGAGATCTCGTCCGAAGCGAGCGCCGGCTCCTACTGGCCCGTCGTCGCCGTACCCGAGCGGGGC AGGCTTCTGAGCCACTTCACCGAGGATGTCCGCTCCTCACTCTTTGCCGAGGCACAGCTCGTGCTCTTGACATTT TGTACCGGCATTCAAGGTTAGGAGGCACAGGTTAACGTAATATTCCTGAAGCTGACGGCCAGTGCAGATGTCACC ACCTTTCTCGACTATCATTGCTTCGCCTCCAACCAGACCGGGAACACCGTCTTTCTCTGCATCGCTCTGATCATC TCCAAGATCGAGAGCGAGACGTTTGTGACGGCAAATATCGGCATGTCTTTGGGTGTGTTCCTGGGCGCCGGATGG TTGACGGGGCAGCTGAGCCACGCAATCGGACCTCGAAAGCGTTGGTGGCTCGTCTTAAGCAATCTGGTCCAGACC GTCTTCGTCTTCGGCGTCGCTGGAATCCAGTACCGGTACGGGAATGCCGATCGCGGACCGGTCGCTCTCGGCGTC GTGGCCCTGCTGGCCTTTGCCGCCGGCAGCCAAGTCGTCCAGTCGCGCAGCCTGCGCATGACTGAAATCAGCACG GCCATGGCCACGGCCGCATGGGTGGACCTGGTCATCGACCCGAAGCTCTTTGTACTGCACAATCGCCCGAGGAAT CGTCGTGTCGCCTTCCTCGCCGCTCTGGCCGTCGGCTCCCTCATCGGCGCCGTGGTCTACCGGCAGGTTGGTTCG GCAGCTGTCATGGCCGTGTCTGGAGCCGGCAAGCTGCTCGTCACCGTACTCTTCCTGTTTTCACCCGCTGAGATG CAACGACGGACCGAGGCAGTGTAA |