Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|289
Gene name
Locationscaffold_106:34064..35246
Strand-
Gene length (bp)1182
Transcript length (bp)1122
Coding sequence length (bp)1119
Protein length (aa) 373

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00682 HMGL-like HMGL-like 4.2E-08 38 104
PF00682 HMGL-like HMGL-like 1.0E-30 158 341

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9I2A0|LIUE_PSEAE 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=liuE PE=1 SV=1 37 349 5.0E-90
sp|P13703|HMGCL_PSEMV Hydroxymethylglutaryl-CoA lyase OS=Pseudomonas mevalonii GN=mvaB PE=3 SV=1 39 369 6.0E-86
sp|Q8HXZ6|HMGCL_MACFA Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1 34 358 2.0E-84
sp|Q5R9E1|HMGCL_PONAB Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii GN=HMGCL PE=2 SV=1 13 358 1.0E-83
sp|P97519|HMGCL_RAT Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1 34 358 2.0E-83
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Swissprot ID Swissprot Description Start End E-value
sp|Q9I2A0|LIUE_PSEAE 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=liuE PE=1 SV=1 37 349 5.0E-90
sp|P13703|HMGCL_PSEMV Hydroxymethylglutaryl-CoA lyase OS=Pseudomonas mevalonii GN=mvaB PE=3 SV=1 39 369 6.0E-86
sp|Q8HXZ6|HMGCL_MACFA Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1 34 358 2.0E-84
sp|Q5R9E1|HMGCL_PONAB Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii GN=HMGCL PE=2 SV=1 13 358 1.0E-83
sp|P97519|HMGCL_RAT Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1 34 358 2.0E-83
sp|Q29448|HMGCL_BOVIN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus GN=HMGCL PE=2 SV=2 34 358 3.0E-83
sp|P35914|HMGCL_HUMAN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2 13 358 2.0E-82
sp|P38060|HMGCL_MOUSE Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Mus musculus GN=Hmgcl PE=1 SV=2 13 358 3.0E-82
sp|D4A5C3|HMGC2_RAT 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Rattus norvegicus GN=Hmgcll1 PE=1 SV=1 39 365 1.0E-81
sp|Q8JZS7|HMGC2_MOUSE 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Mus musculus GN=Hmgcll1 PE=2 SV=1 39 365 3.0E-81
sp|O81027|HMGCL_ARATH Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2 23 353 4.0E-81
sp|P35915|HMGCL_CHICK Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Gallus gallus GN=HMGCL PE=1 SV=1 37 358 7.0E-81
sp|Q8TB92|HMGC2_HUMAN 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Homo sapiens GN=HMGCLL1 PE=1 SV=3 30 362 5.0E-78
sp|A8WG57|HMGC2_DANRE 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Danio rerio GN=hmgcll1 PE=2 SV=1 8 358 1.0E-77
sp|O34873|HMGCL_BACSU Hydroxymethylglutaryl-CoA lyase YngG OS=Bacillus subtilis (strain 168) GN=yngG PE=1 SV=1 38 353 5.0E-68
sp|A9WGE2|CCL_CHLAA (R)-citramalyl-CoA lyase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=ccl PE=1 SV=1 39 358 1.0E-58
sp|Q9JZG1|LEU1_NEIMB 2-isopropylmalate synthase OS=Neisseria meningitidis serogroup B (strain MC58) GN=leuA PE=1 SV=1 34 362 2.0E-09
sp|Q5F8D4|LEU1_NEIG1 2-isopropylmalate synthase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=leuA PE=3 SV=1 34 362 2.0E-09
sp|A8AB61|LEU1_IGNH4 Probable 2-isopropylmalate synthase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=leuA PE=3 SV=1 37 360 5.0E-09
sp|Q9JUK6|LEU1_NEIMA 2-isopropylmalate synthase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=leuA PE=3 SV=1 34 362 5.0E-09
sp|A1KTV6|LEU1_NEIMF 2-isopropylmalate synthase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) GN=leuA PE=3 SV=1 34 362 6.0E-09
sp|B1I1Y1|LEU1_DESAP 2-isopropylmalate synthase OS=Desulforudis audaxviator (strain MP104C) GN=leuA PE=3 SV=1 36 357 1.0E-08
sp|Q8DJ32|LEU1_THEEB 2-isopropylmalate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=leuA PE=3 SV=1 37 356 2.0E-08
sp|D3DJ41|2OCL_HYDTT 2-oxoglutarate carboxylase large subunit OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=cfiA PE=1 SV=1 169 351 2.0E-08
sp|A3DF94|LEU1_CLOTH 2-isopropylmalate synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) GN=leuA PE=3 SV=1 186 360 5.0E-08
sp|Q9RUA9|LEU1_DEIRA 2-isopropylmalate synthase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=leuA PE=3 SV=1 32 361 5.0E-08
sp|C1B8I0|HOA2_RHOOB 4-hydroxy-2-oxovalerate aldolase 2 OS=Rhodococcus opacus (strain B4) GN=ROP_37360 PE=3 SV=1 192 349 1.0E-07
sp|B0TCR1|LEU1_HELMI 2-isopropylmalate synthase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=leuA PE=3 SV=1 36 357 2.0E-07
sp|Q8F445|LEU1_LEPIN 2-isopropylmalate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=leuA PE=3 SV=2 39 356 2.0E-07
sp|Q764S0|HOA_BACPJ 4-hydroxy-2-oxovalerate aldolase OS=Bacillus sp. (strain JF8) GN=nahM PE=3 SV=2 192 347 2.0E-07
sp|Q72RL9|LEU1_LEPIC 2-isopropylmalate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=leuA PE=3 SV=2 39 356 2.0E-07
sp|C1AVG2|HOA4_RHOOB 4-hydroxy-2-oxovalerate aldolase 4 OS=Rhodococcus opacus (strain B4) GN=ROP_54050 PE=3 SV=1 192 349 3.0E-07
sp|Q0S9W9|HOA2_RHOJR 4-hydroxy-2-oxovalerate aldolase 2 OS=Rhodococcus jostii (strain RHA1) GN=RHA1_ro03867 PE=3 SV=1 192 349 3.0E-07
sp|P94907|LEU1_MICAE 2-isopropylmalate synthase OS=Microcystis aeruginosa GN=leuA PE=3 SV=1 34 356 3.0E-07
sp|B9MA32|LEU1_ACIET 2-isopropylmalate synthase OS=Acidovorax ebreus (strain TPSY) GN=leuA PE=3 SV=1 36 356 7.0E-07
sp|Q2LWJ3|LEU1_SYNAS 2-isopropylmalate synthase OS=Syntrophus aciditrophicus (strain SB) GN=leuA PE=3 SV=1 188 356 7.0E-07
sp|O59390|HOSA_PYRHO Putative homocitrate synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1727 PE=3 SV=1 159 301 7.0E-07
sp|A1W6T7|LEU1_ACISJ 2-isopropylmalate synthase OS=Acidovorax sp. (strain JS42) GN=leuA PE=3 SV=1 36 356 7.0E-07
sp|Q3ACM0|HOA_CARHZ 4-hydroxy-2-oxovalerate aldolase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=mhpE PE=3 SV=1 189 339 9.0E-07
sp|A5MZ76|LEU1_CLOK5 2-isopropylmalate synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=leuA PE=3 SV=1 36 324 9.0E-07
sp|B9E371|LEU1_CLOK1 2-isopropylmalate synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=leuA PE=3 SV=1 36 324 9.0E-07
sp|B0JGK2|LEU1_MICAN 2-isopropylmalate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=leuA PE=3 SV=1 34 356 1.0E-06
sp|Q7M9W4|LEU1_WOLSU 2-isopropylmalate synthase OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=leuA PE=3 SV=1 39 357 1.0E-06
sp|A4IRH8|LEU1_GEOTN 2-isopropylmalate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=leuA PE=3 SV=1 221 301 2.0E-06
sp|A8H9A1|LEU1_SHEPA 2-isopropylmalate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=leuA PE=3 SV=1 227 362 3.0E-06
sp|A2SHL8|LEU1_METPP 2-isopropylmalate synthase OS=Methylibium petroleiphilum (strain PM1) GN=leuA PE=3 SV=1 36 356 4.0E-06
sp|B0TQM0|LEU1_SHEHH 2-isopropylmalate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=leuA PE=3 SV=1 227 362 4.0E-06
sp|Q0PHX9|HOA_SPIAU 4-hydroxy-2-oxovalerate aldolase OS=Spirochaeta aurantia PE=3 SV=1 221 342 4.0E-06
sp|C0ZDU6|HOA_BREBN 4-hydroxy-2-oxovalerate aldolase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=BBR47_29780 PE=3 SV=1 218 370 4.0E-06
sp|Q8RL85|LEU1_GEOSE 2-isopropylmalate synthase OS=Geobacillus stearothermophilus GN=leuA PE=3 SV=1 221 301 5.0E-06
sp|B8CM39|LEU1_SHEPW 2-isopropylmalate synthase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=leuA PE=3 SV=1 227 362 5.0E-06
sp|Q57926|AKSA_METJA Probable homocitrate synthase AksA OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=aksA PE=1 SV=3 168 336 5.0E-06
sp|A1TRT4|LEU1_ACIAC 2-isopropylmalate synthase OS=Acidovorax citrulli (strain AAC00-1) GN=leuA PE=3 SV=1 36 356 6.0E-06
sp|Q5KWJ3|LEU1_GEOKA 2-isopropylmalate synthase OS=Geobacillus kaustophilus (strain HTA426) GN=leuA PE=3 SV=1 221 301 6.0E-06
sp|Q9PCG3|LEU1_XYLFA 2-isopropylmalate synthase OS=Xylella fastidiosa (strain 9a5c) GN=leuA PE=3 SV=1 33 362 8.0E-06
sp|C5CYP2|LEU1_VARPS 2-isopropylmalate synthase OS=Variovorax paradoxus (strain S110) GN=leuA PE=3 SV=1 36 356 8.0E-06
sp|B1ZDN3|LEU1_METPB 2-isopropylmalate synthase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=leuA PE=3 SV=1 33 361 9.0E-06
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GO

GO Term Description Terminal node
GO:0003824 catalytic activity Yes
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 155.17 83.07 227.27
CcL In ants, during behavior modification 103.96 56.83 151.10
CcD In ants, recently dead 125.16 67.63 182.68

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.080143 no
SC16a CcD 0.381702 no
CcL CcD 0.450663 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|289
MTIPLVRSAAFRACRRWQWPRWRDYSSASHRQTTQSNKVKIVEVGPRDGLQNEKNTISMDTRIELINRLAGAGIQ
TIEAGAFVSPKWVPQMANSDEVLSRLLHQDRSRTPVPLTYSFLAPNTRGLETAAGVLKENLGAYQTQLEPSRGPE
GETKPAIEVAVFAAATESFSRKNLNCDIQTSLEGFKAVIQDAKALGLRVRAYISVVLGCPFEGFDVDPHKVAEIA
TELLESGADEISLGDTTGLGTAPRTSALLKCMSAAGIRNEDVAMHFHDTFGQALVNTAVSLEHGIRTFDCSVGGL
GGCPYSPGATGNLATENMVYFMETLGMDTGIDLDAVVDVGAWITNELGKPYDSIVGKAVMGARMRAEREAPGA
Coding >Ophio5|289
ATGACGATACCTCTTGTTCGCTCTGCCGCTTTTCGGGCCTGCAGGCGATGGCAATGGCCTCGCTGGAGGGACTAC
TCCTCGGCCAGCCATCGGCAGACAACACAGAGCAACAAGGTCAAGATCGTCGAGGTCGGGCCCCGCGACGGCCTG
CAGAACGAGAAGAATACGATTTCGATGGACACTAGGATTGAGTTGATCAACAGGTTGGCGGGAGCGGGCATCCAG
ACGATTGAGGCCGGGGCTTTCGTGTCGCCGAAATGGGTTCCGCAGATGGCAAACTCGGATGAGGTCCTATCGCGA
CTCCTTCATCAAGACAGGAGCCGGACGCCCGTTCCGTTGACGTACTCATTTCTCGCCCCCAATACAAGGGGCCTG
GAGACTGCGGCGGGGGTGCTCAAGGAGAACCTGGGCGCCTACCAGACGCAACTAGAGCCGAGCCGCGGGCCGGAG
GGTGAGACGAAGCCGGCGATCGAGGTGGCCGTTTTCGCGGCGGCGACGGAGAGCTTCTCGCGCAAGAACCTCAAC
TGCGACATACAGACATCCCTCGAGGGCTTCAAGGCCGTGATCCAGGACGCCAAAGCGCTAGGCCTACGGGTGCGG
GCCTACATCTCGGTAGTACTCGGATGCCCGTTCGAAGGCTTCGATGTCGACCCGCACAAGGTAGCAGAGATTGCG
ACGGAGCTGCTCGAGTCGGGCGCGGACGAGATCTCGCTGGGGGACACGACGGGCTTGGGCACGGCACCACGAACG
AGCGCCCTGCTCAAGTGCATGTCGGCGGCGGGGATCCGCAACGAAGACGTGGCGATGCACTTCCACGACACATTC
GGCCAGGCGCTGGTCAACACGGCCGTTTCGCTTGAGCACGGCATCCGCACTTTTGACTGCAGCGTCGGCGGGCTG
GGCGGGTGTCCGTACAGCCCGGGGGCTACGGGCAACTTGGCGACGGAGAACATGGTGTACTTTATGGAGACGCTC
GGTATGGACACGGGCATCGACCTGGATGCGGTGGTGGATGTCGGCGCGTGGATCACAAACGAGCTGGGGAAGCCG
TACGATAGCATAGTTGGCAAGGCGGTGATGGGGGCGCGGATGAGGGCCGAGAGAGAGGCGCCCGGTGCT
Transcript >Ophio5|289
ATGACGATACCTCTTGTTCGCTCTGCCGCTTTTCGGGCCTGCAGGCGATGGCAATGGCCTCGCTGGAGGGACTAC
TCCTCGGCCAGCCATCGGCAGACAACACAGAGCAACAAGGTCAAGATCGTCGAGGTCGGGCCCCGCGACGGCCTG
CAGAACGAGAAGAATACGATTTCGATGGACACTAGGATTGAGTTGATCAACAGGTTGGCGGGAGCGGGCATCCAG
ACGATTGAGGCCGGGGCTTTCGTGTCGCCGAAATGGGTTCCGCAGATGGCAAACTCGGATGAGGTCCTATCGCGA
CTCCTTCATCAAGACAGGAGCCGGACGCCCGTTCCGTTGACGTACTCATTTCTCGCCCCCAATACAAGGGGCCTG
GAGACTGCGGCGGGGGTGCTCAAGGAGAACCTGGGCGCCTACCAGACGCAACTAGAGCCGAGCCGCGGGCCGGAG
GGTGAGACGAAGCCGGCGATCGAGGTGGCCGTTTTCGCGGCGGCGACGGAGAGCTTCTCGCGCAAGAACCTCAAC
TGCGACATACAGACATCCCTCGAGGGCTTCAAGGCCGTGATCCAGGACGCCAAAGCGCTAGGCCTACGGGTGCGG
GCCTACATCTCGGTAGTACTCGGATGCCCGTTCGAAGGCTTCGATGTCGACCCGCACAAGGTAGCAGAGATTGCG
ACGGAGCTGCTCGAGTCGGGCGCGGACGAGATCTCGCTGGGGGACACGACGGGCTTGGGCACGGCACCACGAACG
AGCGCCCTGCTCAAGTGCATGTCGGCGGCGGGGATCCGCAACGAAGACGTGGCGATGCACTTCCACGACACATTC
GGCCAGGCGCTGGTCAACACGGCCGTTTCGCTTGAGCACGGCATCCGCACTTTTGACTGCAGCGTCGGCGGGCTG
GGCGGGTGTCCGTACAGCCCGGGGGCTACGGGCAACTTGGCGACGGAGAACATGGTGTACTTTATGGAGACGCTC
GGTATGGACACGGGCATCGACCTGGATGCGGTGGTGGATGTCGGCGCGTGGATCACAAACGAGCTGGGGAAGCCG
TACGATAGCATAGTTGGCAAGGCGGTGATGGGGGCGCGGATGAGGGCCGAGAGAGAGGCGCCCGGTGCTTGA
Gene >Ophio5|289
ATGACGATACCTCTTGTTCGCTCTGCCGCTTTTCGGGCCTGCAGGCGATGGCAATGGCCTCGCTGGAGGGACTAC
TCCTCGGCCAGCCATCGGCAGACAACACAGAGCAACAAGGTCAAGATCGTCGAGGTCGGGCCCCGCGACGGCCTG
CAGAACGAGAAGAATACGATTTCGATGGACACTAGGATTGAGTTGATCAACAGGTTGGCGGGAGCGGGCATCCAG
ACGATTGAGGCCGGGGCTTTCGTGTCGCCGAAATGGGTTCCGCAGGTGGGTGATGCCATCTGCTAGGGGAGGCGG
CAACGATACTGACCGAAGCGGACGCGACAGATGGCAAACTCGGATGAGGTCCTATCGCGACTCCTTCATCAAGAC
AGGAGCCGGACGCCCGTTCCGTTGACGTACTCATTTCTCGCCCCCAATACAAGGGGCCTGGAGACTGCGGCGGGG
GTGCTCAAGGAGAACCTGGGCGCCTACCAGACGCAACTAGAGCCGAGCCGCGGGCCGGAGGGTGAGACGAAGCCG
GCGATCGAGGTGGCCGTTTTCGCGGCGGCGACGGAGAGCTTCTCGCGCAAGAACCTCAACTGCGACATACAGACA
TCCCTCGAGGGCTTCAAGGCCGTGATCCAGGACGCCAAAGCGCTAGGCCTACGGGTGCGGGCCTACATCTCGGTA
GTACTCGGATGCCCGTTCGAAGGCTTCGATGTCGACCCGCACAAGGTAGCAGAGATTGCGACGGAGCTGCTCGAG
TCGGGCGCGGACGAGATCTCGCTGGGGGACACGACGGGCTTGGGCACGGCACCACGAACGAGCGCCCTGCTCAAG
TGCATGTCGGCGGCGGGGATCCGCAACGAAGACGTGGCGATGCACTTCCACGACACATTCGGCCAGGCGCTGGTC
AACACGGCCGTTTCGCTTGAGCACGGCATCCGCACTTTTGACTGCAGCGTCGGCGGGCTGGGCGGGTGTCCGTAC
AGCCCGGGGGCTACGGGCAACTTGGCGACGGAGAACATGGTGTACTTTATGGAGACGCTCGGTATGGACACGGGC
ATCGACCTGGATGCGGTGGTGGATGTCGGCGCGTGGATCACAAACGAGCTGGGGAAGCCGTACGATAGCATAGTT
GGCAAGGCGGTGATGGGGGCGCGGATGAGGGCCGAGAGAGAGGCGCCCGGTGCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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