Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|289
Gene name
Locationscaffold_106:34064..35246
Strand-
Gene length (bp)1182
Transcript length (bp)1122
Coding sequence length (bp)1119
Protein length (aa) 373

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00682 HMGL-like HMGL-like 4.2E-08 38 104
PF00682 HMGL-like HMGL-like 1.0E-30 158 341

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9I2A0|LIUE_PSEAE 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=liuE PE=1 SV=1 37 349 5.0E-90
sp|P13703|HMGCL_PSEMV Hydroxymethylglutaryl-CoA lyase OS=Pseudomonas mevalonii GN=mvaB PE=3 SV=1 39 369 6.0E-86
sp|Q8HXZ6|HMGCL_MACFA Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1 34 358 2.0E-84
sp|Q5R9E1|HMGCL_PONAB Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii GN=HMGCL PE=2 SV=1 13 358 1.0E-83
sp|P97519|HMGCL_RAT Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1 34 358 2.0E-83
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Swissprot ID Swissprot Description Start End E-value
sp|Q9I2A0|LIUE_PSEAE 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=liuE PE=1 SV=1 37 349 5.0E-90
sp|P13703|HMGCL_PSEMV Hydroxymethylglutaryl-CoA lyase OS=Pseudomonas mevalonii GN=mvaB PE=3 SV=1 39 369 6.0E-86
sp|Q8HXZ6|HMGCL_MACFA Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1 34 358 2.0E-84
sp|Q5R9E1|HMGCL_PONAB Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii GN=HMGCL PE=2 SV=1 13 358 1.0E-83
sp|P97519|HMGCL_RAT Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1 34 358 2.0E-83
sp|Q29448|HMGCL_BOVIN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus GN=HMGCL PE=2 SV=2 34 358 3.0E-83
sp|P35914|HMGCL_HUMAN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2 13 358 2.0E-82
sp|P38060|HMGCL_MOUSE Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Mus musculus GN=Hmgcl PE=1 SV=2 13 358 3.0E-82
sp|D4A5C3|HMGC2_RAT 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Rattus norvegicus GN=Hmgcll1 PE=1 SV=1 39 365 1.0E-81
sp|Q8JZS7|HMGC2_MOUSE 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Mus musculus GN=Hmgcll1 PE=2 SV=1 39 365 3.0E-81
sp|O81027|HMGCL_ARATH Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2 23 353 4.0E-81
sp|P35915|HMGCL_CHICK Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Gallus gallus GN=HMGCL PE=1 SV=1 37 358 7.0E-81
sp|Q8TB92|HMGC2_HUMAN 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Homo sapiens GN=HMGCLL1 PE=1 SV=3 30 362 5.0E-78
sp|A8WG57|HMGC2_DANRE 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Danio rerio GN=hmgcll1 PE=2 SV=1 8 358 1.0E-77
sp|O34873|HMGCL_BACSU Hydroxymethylglutaryl-CoA lyase YngG OS=Bacillus subtilis (strain 168) GN=yngG PE=1 SV=1 38 353 5.0E-68
sp|A9WGE2|CCL_CHLAA (R)-citramalyl-CoA lyase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=ccl PE=1 SV=1 39 358 1.0E-58
sp|Q9JZG1|LEU1_NEIMB 2-isopropylmalate synthase OS=Neisseria meningitidis serogroup B (strain MC58) GN=leuA PE=1 SV=1 34 362 2.0E-09
sp|Q5F8D4|LEU1_NEIG1 2-isopropylmalate synthase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=leuA PE=3 SV=1 34 362 2.0E-09
sp|A8AB61|LEU1_IGNH4 Probable 2-isopropylmalate synthase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=leuA PE=3 SV=1 37 360 5.0E-09
sp|Q9JUK6|LEU1_NEIMA 2-isopropylmalate synthase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=leuA PE=3 SV=1 34 362 5.0E-09
sp|A1KTV6|LEU1_NEIMF 2-isopropylmalate synthase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) GN=leuA PE=3 SV=1 34 362 6.0E-09
sp|B1I1Y1|LEU1_DESAP 2-isopropylmalate synthase OS=Desulforudis audaxviator (strain MP104C) GN=leuA PE=3 SV=1 36 357 1.0E-08
sp|Q8DJ32|LEU1_THEEB 2-isopropylmalate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=leuA PE=3 SV=1 37 356 2.0E-08
sp|D3DJ41|2OCL_HYDTT 2-oxoglutarate carboxylase large subunit OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=cfiA PE=1 SV=1 169 351 2.0E-08
sp|A3DF94|LEU1_CLOTH 2-isopropylmalate synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) GN=leuA PE=3 SV=1 186 360 5.0E-08
sp|Q9RUA9|LEU1_DEIRA 2-isopropylmalate synthase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=leuA PE=3 SV=1 32 361 5.0E-08
sp|C1B8I0|HOA2_RHOOB 4-hydroxy-2-oxovalerate aldolase 2 OS=Rhodococcus opacus (strain B4) GN=ROP_37360 PE=3 SV=1 192 349 1.0E-07
sp|B0TCR1|LEU1_HELMI 2-isopropylmalate synthase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=leuA PE=3 SV=1 36 357 2.0E-07
sp|Q8F445|LEU1_LEPIN 2-isopropylmalate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=leuA PE=3 SV=2 39 356 2.0E-07
sp|Q764S0|HOA_BACPJ 4-hydroxy-2-oxovalerate aldolase OS=Bacillus sp. (strain JF8) GN=nahM PE=3 SV=2 192 347 2.0E-07
sp|Q72RL9|LEU1_LEPIC 2-isopropylmalate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=leuA PE=3 SV=2 39 356 2.0E-07
sp|C1AVG2|HOA4_RHOOB 4-hydroxy-2-oxovalerate aldolase 4 OS=Rhodococcus opacus (strain B4) GN=ROP_54050 PE=3 SV=1 192 349 3.0E-07
sp|Q0S9W9|HOA2_RHOJR 4-hydroxy-2-oxovalerate aldolase 2 OS=Rhodococcus jostii (strain RHA1) GN=RHA1_ro03867 PE=3 SV=1 192 349 3.0E-07
sp|P94907|LEU1_MICAE 2-isopropylmalate synthase OS=Microcystis aeruginosa GN=leuA PE=3 SV=1 34 356 3.0E-07
sp|B9MA32|LEU1_ACIET 2-isopropylmalate synthase OS=Acidovorax ebreus (strain TPSY) GN=leuA PE=3 SV=1 36 356 7.0E-07
sp|Q2LWJ3|LEU1_SYNAS 2-isopropylmalate synthase OS=Syntrophus aciditrophicus (strain SB) GN=leuA PE=3 SV=1 188 356 7.0E-07
sp|O59390|HOSA_PYRHO Putative homocitrate synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1727 PE=3 SV=1 159 301 7.0E-07
sp|A1W6T7|LEU1_ACISJ 2-isopropylmalate synthase OS=Acidovorax sp. (strain JS42) GN=leuA PE=3 SV=1 36 356 7.0E-07
sp|Q3ACM0|HOA_CARHZ 4-hydroxy-2-oxovalerate aldolase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=mhpE PE=3 SV=1 189 339 9.0E-07
sp|A5MZ76|LEU1_CLOK5 2-isopropylmalate synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=leuA PE=3 SV=1 36 324 9.0E-07
sp|B9E371|LEU1_CLOK1 2-isopropylmalate synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=leuA PE=3 SV=1 36 324 9.0E-07
sp|B0JGK2|LEU1_MICAN 2-isopropylmalate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=leuA PE=3 SV=1 34 356 1.0E-06
sp|Q7M9W4|LEU1_WOLSU 2-isopropylmalate synthase OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=leuA PE=3 SV=1 39 357 1.0E-06
sp|A4IRH8|LEU1_GEOTN 2-isopropylmalate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=leuA PE=3 SV=1 221 301 2.0E-06
sp|A8H9A1|LEU1_SHEPA 2-isopropylmalate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=leuA PE=3 SV=1 227 362 3.0E-06
sp|A2SHL8|LEU1_METPP 2-isopropylmalate synthase OS=Methylibium petroleiphilum (strain PM1) GN=leuA PE=3 SV=1 36 356 4.0E-06
sp|B0TQM0|LEU1_SHEHH 2-isopropylmalate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=leuA PE=3 SV=1 227 362 4.0E-06
sp|Q0PHX9|HOA_SPIAU 4-hydroxy-2-oxovalerate aldolase OS=Spirochaeta aurantia PE=3 SV=1 221 342 4.0E-06
sp|C0ZDU6|HOA_BREBN 4-hydroxy-2-oxovalerate aldolase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=BBR47_29780 PE=3 SV=1 218 370 4.0E-06
sp|Q8RL85|LEU1_GEOSE 2-isopropylmalate synthase OS=Geobacillus stearothermophilus GN=leuA PE=3 SV=1 221 301 5.0E-06
sp|B8CM39|LEU1_SHEPW 2-isopropylmalate synthase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=leuA PE=3 SV=1 227 362 5.0E-06
sp|Q57926|AKSA_METJA Probable homocitrate synthase AksA OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=aksA PE=1 SV=3 168 336 5.0E-06
sp|A1TRT4|LEU1_ACIAC 2-isopropylmalate synthase OS=Acidovorax citrulli (strain AAC00-1) GN=leuA PE=3 SV=1 36 356 6.0E-06
sp|Q5KWJ3|LEU1_GEOKA 2-isopropylmalate synthase OS=Geobacillus kaustophilus (strain HTA426) GN=leuA PE=3 SV=1 221 301 6.0E-06
sp|Q9PCG3|LEU1_XYLFA 2-isopropylmalate synthase OS=Xylella fastidiosa (strain 9a5c) GN=leuA PE=3 SV=1 33 362 8.0E-06
sp|C5CYP2|LEU1_VARPS 2-isopropylmalate synthase OS=Variovorax paradoxus (strain S110) GN=leuA PE=3 SV=1 36 356 8.0E-06
sp|B1ZDN3|LEU1_METPB 2-isopropylmalate synthase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=leuA PE=3 SV=1 33 361 9.0E-06
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GO

GO Term Description Terminal node
GO:0003824 catalytic activity Yes
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|289
MTIPLVRSAAFRACRRWQWPRWRDYSSASHRQTTQSNKVKIVEVGPRDGLQNEKNTISMDTRIELINRLAGAGIQ
TIEAGAFVSPKWVPQMANSDEVLSRLLHQDRSRTPVPLTYSFLAPNTRGLETAAGVLKENLGAYQTQLEPSRGPE
GETKPAIEVAVFAAATESFSRKNLNCDIQTSLEGFKAVIQDAKALGLRVRAYISVVLGCPFEGFDVDPHKVAEIA
TELLESGADEISLGDTTGLGTAPRTSALLKCMSAAGIRNEDVAMHFHDTFGQALVNTAVSLEHGIRTFDCSVGGL
GGCPYSPGATGNLATENMVYFMETLGMDTGIDLDAVVDVGAWITNELGKPYDSIVGKAVMGARMRAEREAPGA
Coding >Ophio5|289
ATGACGATACCTCTTGTTCGCTCTGCCGCTTTTCGGGCCTGCAGGCGATGGCAATGGCCTCGCTGGAGGGACTAC
TCCTCGGCCAGCCATCGGCAGACAACACAGAGCAACAAGGTCAAGATCGTCGAGGTCGGGCCCCGCGACGGCCTG
CAGAACGAGAAGAATACGATTTCGATGGACACTAGGATTGAGTTGATCAACAGGTTGGCGGGAGCGGGCATCCAG
ACGATTGAGGCCGGGGCTTTCGTGTCGCCGAAATGGGTTCCGCAGATGGCAAACTCGGATGAGGTCCTATCGCGA
CTCCTTCATCAAGACAGGAGCCGGACGCCCGTTCCGTTGACGTACTCATTTCTCGCCCCCAATACAAGGGGCCTG
GAGACTGCGGCGGGGGTGCTCAAGGAGAACCTGGGCGCCTACCAGACGCAACTAGAGCCGAGCCGCGGGCCGGAG
GGTGAGACGAAGCCGGCGATCGAGGTGGCCGTTTTCGCGGCGGCGACGGAGAGCTTCTCGCGCAAGAACCTCAAC
TGCGACATACAGACATCCCTCGAGGGCTTCAAGGCCGTGATCCAGGACGCCAAAGCGCTAGGCCTACGGGTGCGG
GCCTACATCTCGGTAGTACTCGGATGCCCGTTCGAAGGCTTCGATGTCGACCCGCACAAGGTAGCAGAGATTGCG
ACGGAGCTGCTCGAGTCGGGCGCGGACGAGATCTCGCTGGGGGACACGACGGGCTTGGGCACGGCACCACGAACG
AGCGCCCTGCTCAAGTGCATGTCGGCGGCGGGGATCCGCAACGAAGACGTGGCGATGCACTTCCACGACACATTC
GGCCAGGCGCTGGTCAACACGGCCGTTTCGCTTGAGCACGGCATCCGCACTTTTGACTGCAGCGTCGGCGGGCTG
GGCGGGTGTCCGTACAGCCCGGGGGCTACGGGCAACTTGGCGACGGAGAACATGGTGTACTTTATGGAGACGCTC
GGTATGGACACGGGCATCGACCTGGATGCGGTGGTGGATGTCGGCGCGTGGATCACAAACGAGCTGGGGAAGCCG
TACGATAGCATAGTTGGCAAGGCGGTGATGGGGGCGCGGATGAGGGCCGAGAGAGAGGCGCCCGGTGCT
Transcript >Ophio5|289
ATGACGATACCTCTTGTTCGCTCTGCCGCTTTTCGGGCCTGCAGGCGATGGCAATGGCCTCGCTGGAGGGACTAC
TCCTCGGCCAGCCATCGGCAGACAACACAGAGCAACAAGGTCAAGATCGTCGAGGTCGGGCCCCGCGACGGCCTG
CAGAACGAGAAGAATACGATTTCGATGGACACTAGGATTGAGTTGATCAACAGGTTGGCGGGAGCGGGCATCCAG
ACGATTGAGGCCGGGGCTTTCGTGTCGCCGAAATGGGTTCCGCAGATGGCAAACTCGGATGAGGTCCTATCGCGA
CTCCTTCATCAAGACAGGAGCCGGACGCCCGTTCCGTTGACGTACTCATTTCTCGCCCCCAATACAAGGGGCCTG
GAGACTGCGGCGGGGGTGCTCAAGGAGAACCTGGGCGCCTACCAGACGCAACTAGAGCCGAGCCGCGGGCCGGAG
GGTGAGACGAAGCCGGCGATCGAGGTGGCCGTTTTCGCGGCGGCGACGGAGAGCTTCTCGCGCAAGAACCTCAAC
TGCGACATACAGACATCCCTCGAGGGCTTCAAGGCCGTGATCCAGGACGCCAAAGCGCTAGGCCTACGGGTGCGG
GCCTACATCTCGGTAGTACTCGGATGCCCGTTCGAAGGCTTCGATGTCGACCCGCACAAGGTAGCAGAGATTGCG
ACGGAGCTGCTCGAGTCGGGCGCGGACGAGATCTCGCTGGGGGACACGACGGGCTTGGGCACGGCACCACGAACG
AGCGCCCTGCTCAAGTGCATGTCGGCGGCGGGGATCCGCAACGAAGACGTGGCGATGCACTTCCACGACACATTC
GGCCAGGCGCTGGTCAACACGGCCGTTTCGCTTGAGCACGGCATCCGCACTTTTGACTGCAGCGTCGGCGGGCTG
GGCGGGTGTCCGTACAGCCCGGGGGCTACGGGCAACTTGGCGACGGAGAACATGGTGTACTTTATGGAGACGCTC
GGTATGGACACGGGCATCGACCTGGATGCGGTGGTGGATGTCGGCGCGTGGATCACAAACGAGCTGGGGAAGCCG
TACGATAGCATAGTTGGCAAGGCGGTGATGGGGGCGCGGATGAGGGCCGAGAGAGAGGCGCCCGGTGCTTGA
Gene >Ophio5|289
ATGACGATACCTCTTGTTCGCTCTGCCGCTTTTCGGGCCTGCAGGCGATGGCAATGGCCTCGCTGGAGGGACTAC
TCCTCGGCCAGCCATCGGCAGACAACACAGAGCAACAAGGTCAAGATCGTCGAGGTCGGGCCCCGCGACGGCCTG
CAGAACGAGAAGAATACGATTTCGATGGACACTAGGATTGAGTTGATCAACAGGTTGGCGGGAGCGGGCATCCAG
ACGATTGAGGCCGGGGCTTTCGTGTCGCCGAAATGGGTTCCGCAGGTGGGTGATGCCATCTGCTAGGGGAGGCGG
CAACGATACTGACCGAAGCGGACGCGACAGATGGCAAACTCGGATGAGGTCCTATCGCGACTCCTTCATCAAGAC
AGGAGCCGGACGCCCGTTCCGTTGACGTACTCATTTCTCGCCCCCAATACAAGGGGCCTGGAGACTGCGGCGGGG
GTGCTCAAGGAGAACCTGGGCGCCTACCAGACGCAACTAGAGCCGAGCCGCGGGCCGGAGGGTGAGACGAAGCCG
GCGATCGAGGTGGCCGTTTTCGCGGCGGCGACGGAGAGCTTCTCGCGCAAGAACCTCAACTGCGACATACAGACA
TCCCTCGAGGGCTTCAAGGCCGTGATCCAGGACGCCAAAGCGCTAGGCCTACGGGTGCGGGCCTACATCTCGGTA
GTACTCGGATGCCCGTTCGAAGGCTTCGATGTCGACCCGCACAAGGTAGCAGAGATTGCGACGGAGCTGCTCGAG
TCGGGCGCGGACGAGATCTCGCTGGGGGACACGACGGGCTTGGGCACGGCACCACGAACGAGCGCCCTGCTCAAG
TGCATGTCGGCGGCGGGGATCCGCAACGAAGACGTGGCGATGCACTTCCACGACACATTCGGCCAGGCGCTGGTC
AACACGGCCGTTTCGCTTGAGCACGGCATCCGCACTTTTGACTGCAGCGTCGGCGGGCTGGGCGGGTGTCCGTAC
AGCCCGGGGGCTACGGGCAACTTGGCGACGGAGAACATGGTGTACTTTATGGAGACGCTCGGTATGGACACGGGC
ATCGACCTGGATGCGGTGGTGGATGTCGGCGCGTGGATCACAAACGAGCTGGGGAAGCCGTACGATAGCATAGTT
GGCAAGGCGGTGATGGGGGCGCGGATGAGGGCCGAGAGAGAGGCGCCCGGTGCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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