Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|2889
Gene name
Location	scaffold_23:79294..80854
Strand	-
Gene length (bp)	1560
Transcript length (bp)	1368
Coding sequence length (bp)	1365
Protein length (aa)	455

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF10355	Ytp1	Protein of unknown function (Ytp1)	5.1E-65	133	376
PF10348	DUF2427	Domain of unknown function (DUF2427)	1.2E-30	7	105

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P53584\|YTP1_YEAST	Protein YTP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YTP1 PE=1 SV=1	122	431	8.0E-68
sp\|O59714\|YBH6_SCHPO	Uncharacterized membrane protein C3B8.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3B8.06 PE=1 SV=1	118	363	2.0E-10
sp\|P25639\|YCV1_YEAST	Uncharacterized membrane protein YCR061W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR061W PE=1 SV=2	157	341	8.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 33	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	20	42	22
2	54	72	18
3	82	104	22
4	125	147	22
5	157	179	22
6	253	275	22
7	280	302	22
8	315	337	22
9	352	374	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	116.08	62.43	169.72
CcL	In ants, during behavior modification	190.56	90.28	290.85
CcD	In ants, recently dead	99.72	54.14	145.30

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.040106	yes
SC16a	CcD	0.545109	no
CcL	CcD	0.006982	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|2889 MSSKISAGESVSKEPIDTVLWVHIFVQTFAYGVVFPIGMVLGMTKSRWHVPTQIFGSVFAVLGFVLGHAHGGREF IAGNAHSGFATILQLLLICQVVLGLYLKGHWERGLNGRIRGFIRPCHSVIGKLMPVLSWTQMLFGGITSLGFCQA DHFGQCLAHFIMGSAFIAYGIVLSIILVVGQMWMRRSGRSQEFYDSAVIAAWGCVNTFTEHRWGSAWIRNDWQHT TMGIIWWSAGLAGMWLSRDRDGNPKRNFVPGFVIFMTGWAMSAHPQSLMISAMTHSMFGKTLMAVGLTRIIEIAF VLKDKQSLTDDGRSWNSFQFIPIFLMYAAGFLFMGATEEQMVLVDKSALDHVSYILIMFSVAFMVFLFSNVLIHL YDRLANPLENRDEGLYDRLATPAVENRDLGATGRISTDRRMRDADEFELDGLMSDDDGPSSRGLDSPSSTLGKNE ASSVR
Coding	>Ophio5\|2889 ATGAGCAGCAAAATCTCCGCGGGCGAGTCCGTCTCCAAGGAGCCCATCGATACCGTGCTATGGGTTCACATATTC GTCCAGACGTTCGCCTACGGCGTCGTCTTTCCGATCGGAATGGTGCTGGGCATGACGAAATCGAGATGGCATGTC CCGACTCAAATCTTCGGCTCCGTCTTCGCCGTCCTCGGCTTCGTCCTCGGCCACGCCCACGGAGGTCGTGAGTTC ATCGCCGGCAACGCCCACTCCGGCTTCGCAACTATCCTGCAGTTGCTCCTCATCTGCCAGGTCGTTCTCGGGCTC TACCTCAAGGGCCACTGGGAGAGGGGGCTCAACGGCAGGATCAGGGGCTTCATCCGGCCGTGCCACTCCGTCATT GGCAAGCTCATGCCTGTCCTGTCGTGGACCCAGATGCTCTTTGGCGGCATCACCTCGCTCGGCTTCTGCCAGGCC GACCATTTCGGCCAATGTCTAGCTCACTTCATCATGGGCAGCGCCTTCATCGCCTACGGCATCGTCCTGTCCATC ATCCTCGTCGTCGGTCAGATGTGGATGCGCCGCTCCGGACGTTCGCAAGAATTCTACGACAGTGCCGTCATCGCC GCCTGGGGCTGCGTCAATACCTTTACCGAGCACCGTTGGGGAAGCGCATGGATCAGAAACGACTGGCAGCACACC ACCATGGGCATCATCTGGTGGAGCGCGGGCCTGGCCGGCATGTGGCTCAGCAGGGACCGGGATGGCAATCCCAAG CGCAACTTTGTCCCCGGCTTCGTCATCTTCATGACCGGCTGGGCCATGTCGGCTCATCCGCAGTCGCTGATGATC AGTGCCATGACGCACAGCATGTTTGGGAAGACGCTGATGGCCGTCGGCCTGACCCGCATCATCGAGATTGCCTTT GTTCTCAAGGACAAGCAGTCACTGACGGATGACGGTCGCTCCTGGAACAGTTTTCAGTTTATTCCCATATTCCTC ATGTACGCCGCCGGTTTCCTCTTTATGGGGGCGACTGAGGAGCAGATGGTGCTCGTCGATAAGTCTGCCCTCGAC CACGTCTCATACATCCTAATCATGTTTTCCGTGGCCTTTATGGTCTTTTTGTTCTCCAACGTGCTCATCCATCTG TATGACCGGCTCGCGAACCCGCTGGAGAACAGGGACGAGGGCTTGTATGACCGGCTTGCGACTCCCGCCGTGGAG AATAGGGATTTAGGCGCTACCGGCCGGATATCGACCGACAGGCGGATGCGGGACGCCGACGAGTTTGAACTCGAC GGCTTGATGAGCGATGACGACGGACCATCTTCTCGGGGTCTCGACTCGCCGTCATCGACACTGGGCAAAAACGAG GCATCGTCTGTGCGT
Transcript	>Ophio5\|2889 ATGAGCAGCAAAATCTCCGCGGGCGAGTCCGTCTCCAAGGAGCCCATCGATACCGTGCTATGGGTTCACATATTC GTCCAGACGTTCGCCTACGGCGTCGTCTTTCCGATCGGAATGGTGCTGGGCATGACGAAATCGAGATGGCATGTC CCGACTCAAATCTTCGGCTCCGTCTTCGCCGTCCTCGGCTTCGTCCTCGGCCACGCCCACGGAGGTCGTGAGTTC ATCGCCGGCAACGCCCACTCCGGCTTCGCAACTATCCTGCAGTTGCTCCTCATCTGCCAGGTCGTTCTCGGGCTC TACCTCAAGGGCCACTGGGAGAGGGGGCTCAACGGCAGGATCAGGGGCTTCATCCGGCCGTGCCACTCCGTCATT GGCAAGCTCATGCCTGTCCTGTCGTGGACCCAGATGCTCTTTGGCGGCATCACCTCGCTCGGCTTCTGCCAGGCC GACCATTTCGGCCAATGTCTAGCTCACTTCATCATGGGCAGCGCCTTCATCGCCTACGGCATCGTCCTGTCCATC ATCCTCGTCGTCGGTCAGATGTGGATGCGCCGCTCCGGACGTTCGCAAGAATTCTACGACAGTGCCGTCATCGCC GCCTGGGGCTGCGTCAATACCTTTACCGAGCACCGTTGGGGAAGCGCATGGATCAGAAACGACTGGCAGCACACC ACCATGGGCATCATCTGGTGGAGCGCGGGCCTGGCCGGCATGTGGCTCAGCAGGGACCGGGATGGCAATCCCAAG CGCAACTTTGTCCCCGGCTTCGTCATCTTCATGACCGGCTGGGCCATGTCGGCTCATCCGCAGTCGCTGATGATC AGTGCCATGACGCACAGCATGTTTGGGAAGACGCTGATGGCCGTCGGCCTGACCCGCATCATCGAGATTGCCTTT GTTCTCAAGGACAAGCAGTCACTGACGGATGACGGTCGCTCCTGGAACAGTTTTCAGTTTATTCCCATATTCCTC ATGTACGCCGCCGGTTTCCTCTTTATGGGGGCGACTGAGGAGCAGATGGTGCTCGTCGATAAGTCTGCCCTCGAC CACGTCTCATACATCCTAATCATGTTTTCCGTGGCCTTTATGGTCTTTTTGTTCTCCAACGTGCTCATCCATCTG TATGACCGGCTCGCGAACCCGCTGGAGAACAGGGACGAGGGCTTGTATGACCGGCTTGCGACTCCCGCCGTGGAG AATAGGGATTTAGGCGCTACCGGCCGGATATCGACCGACAGGCGGATGCGGGACGCCGACGAGTTTGAACTCGAC GGCTTGATGAGCGATGACGACGGACCATCTTCTCGGGGTCTCGACTCGCCGTCATCGACACTGGGCAAAAACGAG GCATCGTCTGTGCGTTGA
Gene	>Ophio5\|2889 ATGAGCAGCAAAATCTCCGCGGGCGAGTCCGTCTCCAAGGAGCCCATCGTGAGTGGCGTCTACCCCCGACGCGTC GGAGTTTTTTTTTTTCTTCCTTCTATTATTCTCTTGCTAACCCGTCGCGCAGGATACCGTGCTATGGGTTCACAT ATTCGTCCAGACGTTCGCCTACGGCGTCGTCTTTCCGATCGGAATGGTGCTGGGCGTACGTTGGCACTACTTTTC ATTGTCCTGACCAATGCACGACGCTGACTCTCGTCGACAGATGACGAAATCGAGATGGCATGTCCCGACTCAAAT CTTCGGCTCCGTCTTCGCCGTCCTCGGCTTCGTCCTCGGCCACGCCCACGGAGGTCGTGAGTTCATCGCCGGCAA CGCCCACTCCGGCTTCGCAACTATCCTGCAGTTGCTCCTCATCTGCCAGGTCGTTCTCGGGCTCTACCTCAAGGG CCACTGGGAGAGGGGGCTCAACGGCAGGATCAGGGGCTTCATCCGGCCGTGCCACTCCGTCATTGGCAAGCTCAT GCCTGTCCTGTCGTGGACCCAGATGCTCTTTGGCGGCATCACCTCGCTCGGCTTCTGCCAGGCCGACCATTTCGG CCAATGTCTAGCTCACTTCATCATGGGCAGCGCCTTCATCGCCTACGGCATCGTCCTGTCCATCATCCTCGTCGT CGGTCAGATGTGGATGCGCCGCTCCGGACGTTCGCAAGAATTCTACGACAGTGCCGTCATCGCCGCCTGGGGCTG CGTCAATACCTTTACCGAGCACCGTTGGGGAAGCGCATGGATCAGAAACGACTGGCAGCACACCACCATGGGCAT CATCTGGTGGAGCGCGGGCCTGGCCGGCATGTGGCTCAGCAGGGACCGGGATGGCAATCCCAAGCGCAACTTTGT CCCCGGCTTCGTCATCTTCATGACCGGCTGGGCCATGTCGGCTCATCCGCAGTCGCTGATGATCAGTGCCATGAC GCACAGCATGTTTGGGAAGACGCTGATGGCCGTCGGCCTGACCCGCATCATCGAGATTGCCTTTGTTCTCAAGGA CAAGCAGTCACTGACGGATGACGGTCGCTCCTGGAACAGTTTTCAGTTTATTCCCATATTCGTGAGTTCGGCCAT CTTTGACTACCACGGCCGGCCAGCACTGACTCCCTCCAGCTCATGTACGCCGCCGGTTTCCTCTTTATGGGGGCG ACTGAGGAGCAGATGGTGCTCGTCGATAAGTCTGCCCTCGACCACGTCTCATACATCCTAATCATGTTTTCCGTG GCCTTTATGGTCTTTTTGTTCTCCAACGTGCTCATCCATCTGTATGACCGGCTCGCGAACCCGCTGGAGAACAGG GACGAGGGCTTGTATGACCGGCTTGCGACTCCCGCCGTGGAGAATAGGGATTTAGGCGCTACCGGCCGGATATCG ACCGACAGGCGGATGCGGGACGCCGACGAGTTTGAACTCGACGGCTTGATGAGCGATGACGACGGACCATCTTCT CGGGGTCTCGACTCGCCGTCATCGACACTGGGCAAAAACGAGGCATCGTCTGTGCGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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