© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2880 |
| Gene name | |
| Location | scaffold_23:52999..53761 |
| Strand | + |
| Gene length (bp) | 762 |
| Transcript length (bp) | 579 |
| Coding sequence length (bp) | 576 |
| Protein length (aa) | 192 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13185 | GAF_2 | GAF domain | 6.1E-09 | 77 | 187 |
| PF01590 | GAF | GAF domain | 2.8E-05 | 104 | 187 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36088|FRMSR_YEAST | Free methionine-R-sulfoxide reductase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL069W PE=1 SV=1 | 38 | 190 | 1.0E-46 |
| sp|O34553|YTSP_BACSU | Protein YtsP OS=Bacillus subtilis (strain 168) GN=ytsP PE=3 SV=2 | 37 | 186 | 6.0E-34 |
| sp|O66116|Y507_ZYMMO | Protein ZMO0507 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=ZMO0507 PE=3 SV=1 | 43 | 187 | 3.0E-26 |
| sp|P76270|MSRC_ECOLI | Free methionine-R-sulfoxide reductase OS=Escherichia coli (strain K12) GN=msrC PE=1 SV=2 | 32 | 182 | 1.0E-24 |
| sp|Q8MTJ7|GAFA_DICDI | GAF domain-containing protein A OS=Dictyostelium discoideum GN=gafA PE=3 SV=1 | 38 | 186 | 1.0E-24 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 18.42 | 5.29 | 31.56 |
| CcL | In ants, during behavior modification | 24.84 | 7.69 | 41.98 |
| CcD | In ants, recently dead | 39.70 | 16.22 | 63.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.435286 | no |
| SC16a | CcD | 0.020283 | yes |
| CcL | CcD | 0.150820 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2880 MLISSMTSPRMRPTTSFCFRPERCLRASAIGFVSAGRSCEASIDSSNEQVCNLANAASLLWHAYKAMPAPSNAVN WAGFYVMDRTSSQLRLLLGPFQGKVACQSIELGRGVCGRAAALGETQVVEDVGEDADHIACDSATKSEIVVPVMV GASGRDVVAVIDVDCAAKRGFDECDKRKLQRLAELLAEGCDW |
| Coding | >Ophio5|2880 ATGCTGATTTCGTCAATGACGTCACCAAGGATGAGGCCTACGACCAGCTTCTGCTTCAGGCCCGAGCGCTGTTTG CGGGCCAGCGCAATTGGGTTCGTGAGTGCCGGGCGGAGCTGCGAGGCGTCGATTGACAGCTCCAACGAGCAGGTT TGCAACCTCGCCAACGCTGCCTCGTTGCTGTGGCACGCATACAAGGCGATGCCAGCTCCAAGCAATGCCGTGAAC TGGGCAGGCTTCTACGTCATGGACCGCACCTCGTCGCAGCTACGACTCCTCCTCGGTCCCTTCCAGGGCAAGGTG GCGTGCCAGAGCATCGAGCTGGGCCGCGGCGTCTGCGGCAGGGCGGCGGCATTAGGCGAGACGCAGGTGGTTGAG GATGTGGGCGAGGACGCCGACCACATCGCCTGTGACAGCGCCACTAAGAGCGAGATTGTAGTGCCGGTAATGGTG GGCGCGAGCGGACGCGACGTCGTCGCCGTCATCGACGTCGACTGCGCGGCGAAACGCGGCTTTGACGAGTGCGAC AAGCGGAAGCTTCAGCGGCTGGCCGAGCTGTTGGCCGAAGGCTGTGACTGG |
| Transcript | >Ophio5|2880 ATGCTGATTTCGTCAATGACGTCACCAAGGATGAGGCCTACGACCAGCTTCTGCTTCAGGCCCGAGCGCTGTTTG CGGGCCAGCGCAATTGGGTTCGTGAGTGCCGGGCGGAGCTGCGAGGCGTCGATTGACAGCTCCAACGAGCAGGTT TGCAACCTCGCCAACGCTGCCTCGTTGCTGTGGCACGCATACAAGGCGATGCCAGCTCCAAGCAATGCCGTGAAC TGGGCAGGCTTCTACGTCATGGACCGCACCTCGTCGCAGCTACGACTCCTCCTCGGTCCCTTCCAGGGCAAGGTG GCGTGCCAGAGCATCGAGCTGGGCCGCGGCGTCTGCGGCAGGGCGGCGGCATTAGGCGAGACGCAGGTGGTTGAG GATGTGGGCGAGGACGCCGACCACATCGCCTGTGACAGCGCCACTAAGAGCGAGATTGTAGTGCCGGTAATGGTG GGCGCGAGCGGACGCGACGTCGTCGCCGTCATCGACGTCGACTGCGCGGCGAAACGCGGCTTTGACGAGTGCGAC AAGCGGAAGCTTCAGCGGCTGGCCGAGCTGTTGGCCGAAGGCTGTGACTGGTGA |
| Gene | >Ophio5|2880 ATGGTCTGTCATATCATTGGTGACCTCCACAAGTCTGCTGACTCGAGACTTGGAGGTTCACGCCGACGCAGCTGA TTTCGTCAATGACGTCACCAAGGATGAGGCCTACGACCAGCTTCTGCTTCAGGCCCGAGCGCTGTTTGCGGGCCA GCGCAATTGGGTTCGTGAGTGCCGGGCGGAGCTGCGAGGCGTCGATTGACAGCTCCAACGAGCAGGTTTGGTATG CGGCTCCACCAGACGAGGTCGAGACGCGACAGTAGGTAACCGCCATGTAGCAACCTCGCCAACGCTGCCTCGTTG CTGTGGCACGCATACAAGGCGATGCCAGCTCCAAGCAATGCCGTGAACTGGGCAGGCAAGTGTGGTACAATGGAT ATGTGATCAAATCACGAACCCGGTGCTGAGCGCTGAGCAGGCTTCTACGTCATGGACCGCACCTCGTCGCAGCTA CGACTCCTCCTCGGTCCCTTCCAGGGCAAGGTGGCGTGCCAGAGCATCGAGCTGGGCCGCGGCGTCTGCGGCAGG GCGGCGGCATTAGGCGAGACGCAGGTGGTTGAGGATGTGGGCGAGGACGCCGACCACATCGCCTGTGACAGCGCC ACTAAGAGCGAGATTGTAGTGCCGGTAATGGTGGGCGCGAGCGGACGCGACGTCGTCGCCGTCATCGACGTCGAC TGCGCGGCGAAACGCGGCTTTGACGAGTGCGACAAGCGGAAGCTTCAGCGGCTGGCCGAGCTGTTGGCCGAAGGC TGTGACTGGTGA |