Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|2879
Gene name
Locationscaffold_23:51681..52713
Strand-
Gene length (bp)1032
Transcript length (bp)1032
Coding sequence length (bp)1029
Protein length (aa) 343

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07766 LETM1_RBD LETM1-like, RBD 5.4E-06 250 311

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 150 172 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|2879
MAMSRRLLWRSWALRGDDVRLWSRTCPALLRPPAAAAAAAMQQRQAHGFSAKLNPPASTRPPPLMVPSRDSVEST
MSYYAQLGRGYLRFYKDGLKAIWTNWKLLREKLASIPARDRPSVLFPPRDVPAAFSRADWVLLWRVRHDLVRMPL
FGLMLIVIGEFTALVVIYVYRVVPYTCRIPKQVLTTAERSESRRRSAFEDLEARHLDGALSLDVTPAVARRHILR
SLNLASNVWDWVGFMPPGMWLTKGRSRMAFLDGDDRRLVDDGGPLGLEKAELNIACGERGIDTIGKTESQLSGLL
SLWLRLTRADNPAERRRRMAVLLLTRPDKWPKQRNYTVPDWEL
Coding >Ophio5|2879
ATGGCCATGAGCCGCCGACTTCTTTGGAGAAGCTGGGCGCTCCGCGGCGACGATGTCAGGCTCTGGAGTCGCACA
TGTCCGGCTCTGCTACGACCACCAGCCGCCGCCGCCGCCGCCGCCATGCAGCAGCGACAAGCCCACGGCTTCTCG
GCCAAGCTCAACCCTCCGGCATCAACGCGCCCGCCGCCTCTCATGGTGCCGTCGCGCGACTCGGTGGAGTCGACG
ATGTCCTACTACGCCCAGCTGGGCAGAGGATACCTGCGCTTCTACAAAGACGGGCTCAAGGCCATCTGGACGAAC
TGGAAGCTGCTGCGGGAGAAACTAGCGAGTATCCCGGCGAGAGACCGGCCGTCGGTTCTGTTTCCGCCGCGCGAC
GTGCCCGCGGCTTTCTCCCGCGCCGATTGGGTGCTCTTGTGGCGTGTGCGGCATGACCTAGTCCGCATGCCGCTC
TTTGGACTGATGCTCATCGTCATTGGCGAGTTCACGGCGCTGGTGGTCATTTACGTCTACAGGGTTGTACCCTAC
ACGTGCCGGATACCGAAGCAGGTCTTGACGACGGCGGAGCGGTCCGAGAGTCGGCGGCGGAGCGCCTTCGAAGAT
CTGGAGGCACGGCACCTGGACGGCGCGCTCAGCCTCGACGTGACGCCAGCGGTGGCCCGTCGACACATCCTTCGC
AGTCTGAACCTCGCCAGTAACGTCTGGGACTGGGTGGGCTTCATGCCGCCGGGCATGTGGCTGACCAAGGGTCGG
TCGCGCATGGCCTTTCTCGACGGCGACGACCGGCGTCTTGTCGATGACGGCGGCCCATTGGGGCTCGAAAAGGCG
GAGCTAAACATTGCCTGCGGTGAGCGGGGCATCGATACGATCGGCAAGACGGAGAGCCAACTCAGTGGCTTGCTC
TCGCTCTGGCTCCGCTTGACGAGGGCTGATAACCCGGCGGAGAGGCGACGACGAATGGCGGTGCTGCTACTGACC
AGGCCCGACAAGTGGCCGAAACAGCGGAACTATACCGTGCCGGACTGGGAGCTG
Transcript >Ophio5|2879
ATGGCCATGAGCCGCCGACTTCTTTGGAGAAGCTGGGCGCTCCGCGGCGACGATGTCAGGCTCTGGAGTCGCACA
TGTCCGGCTCTGCTACGACCACCAGCCGCCGCCGCCGCCGCCGCCATGCAGCAGCGACAAGCCCACGGCTTCTCG
GCCAAGCTCAACCCTCCGGCATCAACGCGCCCGCCGCCTCTCATGGTGCCGTCGCGCGACTCGGTGGAGTCGACG
ATGTCCTACTACGCCCAGCTGGGCAGAGGATACCTGCGCTTCTACAAAGACGGGCTCAAGGCCATCTGGACGAAC
TGGAAGCTGCTGCGGGAGAAACTAGCGAGTATCCCGGCGAGAGACCGGCCGTCGGTTCTGTTTCCGCCGCGCGAC
GTGCCCGCGGCTTTCTCCCGCGCCGATTGGGTGCTCTTGTGGCGTGTGCGGCATGACCTAGTCCGCATGCCGCTC
TTTGGACTGATGCTCATCGTCATTGGCGAGTTCACGGCGCTGGTGGTCATTTACGTCTACAGGGTTGTACCCTAC
ACGTGCCGGATACCGAAGCAGGTCTTGACGACGGCGGAGCGGTCCGAGAGTCGGCGGCGGAGCGCCTTCGAAGAT
CTGGAGGCACGGCACCTGGACGGCGCGCTCAGCCTCGACGTGACGCCAGCGGTGGCCCGTCGACACATCCTTCGC
AGTCTGAACCTCGCCAGTAACGTCTGGGACTGGGTGGGCTTCATGCCGCCGGGCATGTGGCTGACCAAGGGTCGG
TCGCGCATGGCCTTTCTCGACGGCGACGACCGGCGTCTTGTCGATGACGGCGGCCCATTGGGGCTCGAAAAGGCG
GAGCTAAACATTGCCTGCGGTGAGCGGGGCATCGATACGATCGGCAAGACGGAGAGCCAACTCAGTGGCTTGCTC
TCGCTCTGGCTCCGCTTGACGAGGGCTGATAACCCGGCGGAGAGGCGACGACGAATGGCGGTGCTGCTACTGACC
AGGCCCGACAAGTGGCCGAAACAGCGGAACTATACCGTGCCGGACTGGGAGCTGTAG
Gene >Ophio5|2879
ATGGCCATGAGCCGCCGACTTCTTTGGAGAAGCTGGGCGCTCCGCGGCGACGATGTCAGGCTCTGGAGTCGCACA
TGTCCGGCTCTGCTACGACCACCAGCCGCCGCCGCCGCCGCCGCCATGCAGCAGCGACAAGCCCACGGCTTCTCG
GCCAAGCTCAACCCTCCGGCATCAACGCGCCCGCCGCCTCTCATGGTGCCGTCGCGCGACTCGGTGGAGTCGACG
ATGTCCTACTACGCCCAGCTGGGCAGAGGATACCTGCGCTTCTACAAAGACGGGCTCAAGGCCATCTGGACGAAC
TGGAAGCTGCTGCGGGAGAAACTAGCGAGTATCCCGGCGAGAGACCGGCCGTCGGTTCTGTTTCCGCCGCGCGAC
GTGCCCGCGGCTTTCTCCCGCGCCGATTGGGTGCTCTTGTGGCGTGTGCGGCATGACCTAGTCCGCATGCCGCTC
TTTGGACTGATGCTCATCGTCATTGGCGAGTTCACGGCGCTGGTGGTCATTTACGTCTACAGGGTTGTACCCTAC
ACGTGCCGGATACCGAAGCAGGTCTTGACGACGGCGGAGCGGTCCGAGAGTCGGCGGCGGAGCGCCTTCGAAGAT
CTGGAGGCACGGCACCTGGACGGCGCGCTCAGCCTCGACGTGACGCCAGCGGTGGCCCGTCGACACATCCTTCGC
AGTCTGAACCTCGCCAGTAACGTCTGGGACTGGGTGGGCTTCATGCCGCCGGGCATGTGGCTGACCAAGGGTCGG
TCGCGCATGGCCTTTCTCGACGGCGACGACCGGCGTCTTGTCGATGACGGCGGCCCATTGGGGCTCGAAAAGGCG
GAGCTAAACATTGCCTGCGGTGAGCGGGGCATCGATACGATCGGCAAGACGGAGAGCCAACTCAGTGGCTTGCTC
TCGCTCTGGCTCCGCTTGACGAGGGCTGATAACCCGGCGGAGAGGCGACGACGAATGGCGGTGCTGCTACTGACC
AGGCCCGACAAGTGGCCGAAACAGCGGAACTATACCGTGCCGGACTGGGAGCTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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