© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|2876 |
| Gene name | |
| Location | scaffold_23:48744..50207 |
| Strand | + |
| Gene length (bp) | 1463 |
| Transcript length (bp) | 1062 |
| Coding sequence length (bp) | 1059 |
| Protein length (aa) | 353 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03060 | NMO | Nitronate monooxygenase | 2.6E-25 | 127 | 322 |
| PF01070 | FMN_dh | FMN-dependent dehydrogenase | 5.2E-09 | 101 | 220 |
| PF01645 | Glu_synthase | Conserved region in glutamate synthase | 2.3E-05 | 114 | 220 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q01284|2NPD_NEUCR | Nitronate monooxygenase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ncd-2 PE=1 SV=1 | 3 | 324 | 7.0E-81 |
| sp|Q49W60|2NPD_STAS1 | Probable nitronate monooxygenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1854 PE=3 SV=1 | 13 | 238 | 9.0E-13 |
| sp|Q6GIG7|2NPD_STAAR | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0883 PE=3 SV=1 | 13 | 246 | 2.0E-11 |
| sp|Q6GB05|2NPD_STAAS | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0791 PE=3 SV=1 | 13 | 246 | 2.0E-11 |
| sp|Q99VF6|2NPD_STAAN | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain N315) GN=SA0781 PE=3 SV=1 | 13 | 246 | 2.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q01284|2NPD_NEUCR | Nitronate monooxygenase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ncd-2 PE=1 SV=1 | 3 | 324 | 7.0E-81 |
| sp|Q49W60|2NPD_STAS1 | Probable nitronate monooxygenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1854 PE=3 SV=1 | 13 | 238 | 9.0E-13 |
| sp|Q6GIG7|2NPD_STAAR | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0883 PE=3 SV=1 | 13 | 246 | 2.0E-11 |
| sp|Q6GB05|2NPD_STAAS | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0791 PE=3 SV=1 | 13 | 246 | 2.0E-11 |
| sp|Q99VF6|2NPD_STAAN | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain N315) GN=SA0781 PE=3 SV=1 | 13 | 246 | 2.0E-11 |
| sp|A5IR97|2NPD_STAA9 | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain JH9) GN=SaurJH9_0919 PE=3 SV=1 | 13 | 246 | 2.0E-11 |
| sp|A6U025|2NPD_STAA2 | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain JH1) GN=SaurJH1_0937 PE=3 SV=1 | 13 | 246 | 2.0E-11 |
| sp|O05413|2NPD_BACSU | Probable nitronate monooxygenase OS=Bacillus subtilis (strain 168) GN=yrpB PE=3 SV=1 | 134 | 244 | 3.0E-11 |
| sp|A8Z1H7|2NPD_STAAT | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=USA300HOU_0879 PE=3 SV=1 | 13 | 246 | 3.0E-11 |
| sp|A6QFD2|2NPD_STAAE | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain Newman) GN=NWMN_0792 PE=3 SV=1 | 13 | 246 | 3.0E-11 |
| sp|Q5HHG4|2NPD_STAAC | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain COL) GN=SACOL0922 PE=3 SV=1 | 13 | 246 | 3.0E-11 |
| sp|Q2FZX9|2NPD_STAA8 | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00855 PE=3 SV=1 | 13 | 246 | 3.0E-11 |
| sp|Q2FIF3|2NPD_STAA3 | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0825 PE=3 SV=1 | 13 | 246 | 3.0E-11 |
| sp|Q8NXG7|2NPD_STAAW | Probable nitronate monooxygenase OS=Staphylococcus aureus (strain MW2) GN=MW0803 PE=3 SV=1 | 13 | 246 | 8.0E-11 |
| sp|Q4L4T4|2NPD_STAHJ | Probable nitronate monooxygenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2032 PE=3 SV=1 | 131 | 238 | 8.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015930 | glutamate synthase activity | Yes |
| GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | Yes |
| GO:0006537 | glutamate biosynthetic process | Yes |
| GO:0018580 | nitronate monooxygenase activity | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0044237 | cellular metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044283 | small molecule biosynthetic process | No |
| GO:0006536 | glutamate metabolic process | No |
| GO:0016703 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0046394 | carboxylic acid biosynthetic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | No |
| GO:0008652 | cellular amino acid biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0006520 | cellular amino acid metabolic process | No |
| GO:0016053 | organic acid biosynthetic process | No |
| GO:0009064 | glutamine family amino acid metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:1901605 | alpha-amino acid metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0043650 | dicarboxylic acid biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0009084 | glutamine family amino acid biosynthetic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901607 | alpha-amino acid biosynthetic process | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0043648 | dicarboxylic acid metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0004497 | monooxygenase activity | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|2876 MSLTKWFPWTASPVICNGPMLGAATPALATEVSKAGGIGFLASIFDLSKGSAQLSALDTELSESEPSRIGISFIT GDASAALFSQTALPIIAKHRPAAVWLFAQAERTRLHLAFIRALRNLDPAPRVFVQIGNVEAAREAASDGAHVLVC QGIDAGGHQFRRGAGVISLVPEVCEMLKNEFPDRQVAVLAAGGIVDERGVVAAMALGADGVVMGTRFTVARESVY PEHRKQQILQTADGAVSTLKAPFHDEIKSSALWGPLYDGRAIIGPVHLQFMSGSSLDECKKMLQENYSTDEATQM LSTWAGTGVGLVKRQQPAGEVVVETDVHVGIRTTPASLPMHCRRYKYRAHDAD |
| Coding | >Ophio5|2876 ATGTCTCTGACCAAGTGGTTCCCATGGACGGCCTCCCCCGTGATATGCAACGGGCCTATGCTGGGCGCAGCAACT CCCGCTCTGGCTACTGAGGTCTCAAAGGCCGGCGGCATTGGCTTCCTCGCCTCCATTTTCGACTTGTCTAAGGGC TCGGCCCAGCTGAGCGCTCTGGATACAGAGCTGTCTGAGAGTGAACCGTCGCGCATCGGCATCAGCTTCATCACC GGCGACGCCTCGGCTGCCCTCTTCTCACAGACGGCGCTTCCCATCATTGCCAAGCATCGTCCGGCTGCTGTCTGG CTCTTTGCGCAAGCCGAGCGCACACGGCTGCACCTGGCCTTCATCCGCGCTCTCAGGAACTTGGATCCGGCGCCG CGTGTCTTCGTTCAGATCGGCAACGTCGAGGCCGCGAGGGAGGCCGCCTCCGACGGGGCCCATGTACTGGTTTGT CAGGGCATCGATGCCGGCGGCCATCAATTCCGTCGGGGAGCCGGTGTCATCTCTCTGGTGCCAGAGGTCTGCGAG ATGCTCAAGAACGAGTTTCCCGATCGCCAAGTAGCCGTCCTCGCTGCCGGTGGCATCGTCGACGAACGGGGAGTT GTCGCTGCCATGGCACTTGGGGCCGACGGCGTCGTTATGGGCACTCGGTTCACCGTGGCCAGAGAATCCGTCTAT CCCGAGCATCGAAAACAGCAAATCCTGCAGACTGCGGACGGAGCCGTTTCCACGCTCAAAGCGCCATTCCACGAC GAGATCAAGAGCTCGGCTCTCTGGGGTCCCCTGTATGACGGCCGCGCCATCATAGGCCCCGTGCACCTTCAATTC ATGTCTGGTTCGTCCCTGGACGAGTGCAAGAAGATGCTGCAAGAGAATTACTCCACCGACGAGGCAACCCAGATG CTCAGCACGTGGGCAGGTACGGGCGTGGGTCTCGTTAAGCGGCAACAGCCAGCGGGCGAGGTCGTCGTCGAGACA GATGTGCATGTTGGAATACGAACAACGCCGGCGAGCCTTCCCATGCATTGCCGTCGGTACAAGTACAGAGCCCAC GACGCCGAC |
| Transcript | >Ophio5|2876 ATGTCTCTGACCAAGTGGTTCCCATGGACGGCCTCCCCCGTGATATGCAACGGGCCTATGCTGGGCGCAGCAACT CCCGCTCTGGCTACTGAGGTCTCAAAGGCCGGCGGCATTGGCTTCCTCGCCTCCATTTTCGACTTGTCTAAGGGC TCGGCCCAGCTGAGCGCTCTGGATACAGAGCTGTCTGAGAGTGAACCGTCGCGCATCGGCATCAGCTTCATCACC GGCGACGCCTCGGCTGCCCTCTTCTCACAGACGGCGCTTCCCATCATTGCCAAGCATCGTCCGGCTGCTGTCTGG CTCTTTGCGCAAGCCGAGCGCACACGGCTGCACCTGGCCTTCATCCGCGCTCTCAGGAACTTGGATCCGGCGCCG CGTGTCTTCGTTCAGATCGGCAACGTCGAGGCCGCGAGGGAGGCCGCCTCCGACGGGGCCCATGTACTGGTTTGT CAGGGCATCGATGCCGGCGGCCATCAATTCCGTCGGGGAGCCGGTGTCATCTCTCTGGTGCCAGAGGTCTGCGAG ATGCTCAAGAACGAGTTTCCCGATCGCCAAGTAGCCGTCCTCGCTGCCGGTGGCATCGTCGACGAACGGGGAGTT GTCGCTGCCATGGCACTTGGGGCCGACGGCGTCGTTATGGGCACTCGGTTCACCGTGGCCAGAGAATCCGTCTAT CCCGAGCATCGAAAACAGCAAATCCTGCAGACTGCGGACGGAGCCGTTTCCACGCTCAAAGCGCCATTCCACGAC GAGATCAAGAGCTCGGCTCTCTGGGGTCCCCTGTATGACGGCCGCGCCATCATAGGCCCCGTGCACCTTCAATTC ATGTCTGGTTCGTCCCTGGACGAGTGCAAGAAGATGCTGCAAGAGAATTACTCCACCGACGAGGCAACCCAGATG CTCAGCACGTGGGCAGGTACGGGCGTGGGTCTCGTTAAGCGGCAACAGCCAGCGGGCGAGGTCGTCGTCGAGACA GATGTGCATGTTGGAATACGAACAACGCCGGCGAGCCTTCCCATGCATTGCCGTCGGTACAAGTACAGAGCCCAC GACGCCGACTAG |
| Gene | >Ophio5|2876 ATGTCTCTGACCAAGTGGTTCCCATGGACGGCCTCCCCCGTGATATGCAACGGGCCTATGCTGGGCGCAGCAACT CCCGCTCTGGCTGTAACTAACTGCCTACCTCCGAAGCCTCGACCCCCAGAGGCAGACATGACTGACGAGAGCAGA CTGAGGTCTCAAAGGCCGGCGGCATTGGCTTCCTCGCCTCCATTTTCGACTTGTCTAAGGGCTCGGCCCAGCTGA GCGCTCTGGATACAGAGCTGTCTGAGAGTGAACCGTCGCGCATCGGCATCAGCTTCATCACCGGCGACGCCTCGG CTGCCCTCTTCTCACAGACGGCGCTTCCCATCATTGCCAAGCATCGTCCGGCTGCTGTCTGGCTCTTTGCGCAAG CCGAGCGCACACGGCTGCACCTGGCCTTCATCCGCGCTCTCAGGAACTTGGATCCGGCGCCGCGTGTCTTCGTTC AGATCGGCAACGTCGAGGCCGCGAGGGAGGCCGCCTCCGACGGGGCCCATGTACTGGTTTGTCAGGGCATCGATG CCGGCGGTATGGGACGCGGTCTACTGGTAGTTGCTGTCGACGCTGAACGAGCAAATAGGCCATCAATTCCGTCGG GGAGCCGGTGTCATCTCTCTGGTGCCAGAGGTCTGCGAGATGCTCAAGAACGAGTTTCCCGATCGCCAAGTAGCC GTCCTCGCTGCCGGTGGCATCGTCGACGAACGGGGAGTTGTCGCTGCCATGGCACTTGGTGAAAAGGAGCCTCCT CTCAATCATCTAGAGACTTTGGCTGATATTTGATTGCAGGGGCCGACGGCGTCGTTATGGGCACTCGGGTTTCAA CCCTTGCATTGACCTTCTGTTAATCTGGCTGCTAATGATCTTCGTACAGTTCACCGTGGCCAGAGAATCCGTCTA TCCCGAGCATCGAAAACAGCAAATCCTGCAGACTGCGGACGGAGCCGTTTCCACGCTCAAGTTGGCCACCGCGAT CCTGTCTCCGGAGCCAGGCTAATACCCGCTGTCGTTATTAGAGCGCCATTCCACGACGAGATCAAGAGCTCGGCT CTCTGGGGTCCCCTGTATGACGGCCGCGCCATCATAGGCCCCGTGCACCTTCAATTCATGTCTGGTTCGTCCCTG GACGAGTGCAAGAAGATGCTGCAAGAGAATTACTCCACCGACGAGGCAACCCAGATGCTCAGCACGTGGGCGTAA GTGGCCATACAGCCTGCTAGGCTGTGGCATCCTAGGCTCATTATGCTACAGAGGTACGGGCGTGGGTCTCGTTAA GCGGCAACAGCCAGCGGGCGAGGTCGTCGTCGAGGTGCGCGAAGGCGCAAAGGAACACATTAGGAGGCTGGCCGG GCTTGTCTAAGATTTCCAACCAGACAGATGTGCATGTTGGAATACGAACAACGCCGGCGAGCCTTCCCATGCATT GCCGTCGGTACAAGTACAGAGCCCACGACGCCGACTAG |